Array 1 163351-160820 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZOW01000001.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5564062, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 163350 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 163289 29 100.0 32 ............................. CCCCCTCCCCTACTCCGCGCCGGAAAAAAAAC 163228 29 100.0 32 ............................. TTCTTTTCGTGCGTCGCCCAGCGTTTGTGGCA 163167 29 100.0 32 ............................. GCGGCAAAAGCTGTCAGCGATTTTTTCAGTGA 163106 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 163045 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 162984 29 96.6 32 A............................ CCCGCATTTCTCGGTGATCGACTTTGTAACCT 162923 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 162862 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 162801 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 162740 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 162679 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 162618 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 162557 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 162496 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 162435 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 162374 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 162313 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 162252 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 162191 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 162130 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 162069 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 162008 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 161947 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 161886 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 161825 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161764 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161703 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 161642 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 161581 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 161520 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 161459 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 161398 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 161337 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 161276 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 161215 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 161154 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161093 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161032 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 160971 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160910 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 160849 29 93.1 0 A...........T................ | A [160822] ========== ====== ====== ====== ============================= ================================ ================== 42 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181473-179858 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZOW01000001.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5564062, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181472 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 181411 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 181350 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 181289 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 181228 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 181167 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 181106 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 181045 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 180984 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 180923 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 180862 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 180801 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 180740 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 180679 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 180618 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 180557 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180496 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 180435 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 180374 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 180312 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 180251 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 180190 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 180129 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 180068 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 180007 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 179946 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 179885 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //