Array 1 2412-859 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHSTB010000012.1 Streptomyces olivaceus strain MM1-13 Scaffold11_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2411 29 100.0 32 ............................. GTGGCCCGGACGGTCATCACGTTGACCGTGGG 2350 29 100.0 32 ............................. GCGCCCCCAGTCGACGGACTGGGGGCGCGTGC 2289 29 96.6 32 ............................G ACGCTCGGAACCTTGATCGTTCTCAAGTTCTC 2228 29 96.6 32 ............................T ACCAGCCACACCTCCCGGAACAGTGACGGGAA 2167 29 96.6 32 ............................G CGTGTGGGGAGTCCGCCGCGGAGGCCGAAGGC 2106 29 100.0 32 ............................. TCCTCACGCGCCTCAGCGACCACCGGACTGCC 2045 29 100.0 32 ............................. TGGCGGGCGTCCTCGGGCCGGGGGACGTCAAC 1984 29 96.6 32 ............................G CGGGACACCGAGGATGCCGTGCGGTCCCGCAT 1923 29 100.0 32 ............................. CGCCCTCGCCTGGGACCGCTGGCCCGACGGCT 1862 29 96.6 32 ............................G GCTGTGGCCACGGGTTGACGCTGCGGCAGTCG 1801 29 100.0 32 ............................. TCGGCGGTGCCGTCCGCGCGGATGATCCACCC 1740 29 96.6 32 ............................G GTGGCCGAGCGCCTCGGCGTGTCCCGCCGGAC 1679 29 100.0 32 ............................. CGGGCCTTTTTGCGTTGGGGCCCTGGTCAGGC 1618 29 100.0 32 ............................. CTCGGCAGCGATGACCGCGCGCTGCGTCTCGC 1557 29 96.6 32 ............................G ACCCTCACGGCCCTGCGCGCCGGGAGCTCCCC 1496 29 96.6 32 ............................G CTGAAGCCCTGCAAGGACTGGCTCGCCTCGCA 1435 29 96.6 32 ............................G ATCGCAGCGCTCGCGCTCCGCCCGGAGGGCTG 1374 29 100.0 32 ............................. AGGCACAGCGGGCCAGGAGCGCCCTCCGCGGG 1313 29 100.0 32 ............................. CCGGGTCTGCATCGACGACGACTTCGGACCGT 1252 29 96.6 32 ..T.......................... CGAGAGGACTCACATGCCCAAGAAGACCAACC 1191 29 96.6 32 ............................G CAGGTCAACGACGTTCACGGCCACGCCGCCGG 1130 29 96.6 32 ............................G CCGCGGGCGTCGCTGGCGAGGCTGAGCGTCCA 1069 29 93.1 31 ..........T.................T GGGACGTGGCCCGGTACTGGCCGGGCCGGTC 1009 29 93.1 32 .......................T.C... CGCCAGGACGTGTCGCCGCTGTAGGCGGTGCA 948 29 82.8 32 .............T.A..T......C..G GAGCTGCGCGGCCGGTGCCCCGTACGCCGCGC 887 29 75.9 0 ....C..A.............ACG.CC.. | ========== ====== ====== ====== ============================= ================================ ================== 26 29 96.3 32 GTCGTCCCCGCGCCTGCGGGGGTAGTTCC # Left flank : GGCAGCGACCTGCTGGACGAGGACCTCGGCGCCCTCTGGGACGACGGCGACACCGTCGTCAGCGGCGGCCGCAACTGGAGCGCCACGCACCACCTCGACATCATCCCCGAACCCACCTCCGCAGAGGCGGCCCCGTGAGCGCCGGAACGACCGTAGTCGTACTCATCGCGGCCCCACCCGGCCTCCGCGGACACCTCACCCGCTGGTTCGTCGAGGTGGCCGCCGGCGTCTACGTCGGTAACCCCAACCCCCGCATCCGCGACCGCCTGTGGAGCGTCCTCGCCGAACGCATCCACGACGGCCAGGCCGTCATGATCGAACCGGCAGCCACCGAACAGGGCTGGTCGGCCCGCACCGCCGGCCGCGACCGCTGGACCCCCGTCGACTTCGACGGCCTGACCCTCATGGCCCGCCCACGCCAGAACGGACAACCCTGGCGGCCCACGAACGAGGTAAAGCAAAACGGCATGATCACCTGACAAAACACCAGCTCACGAAGA # Right flank : TTGCAGAGCTTTGTGTGGACGGTGGAAGCGAGGCGGTCGTCTTCTCCAGGCGGATCGGAAACCGCGGAGCGCCGCCGTGGCCGTCATGATGACGATATACGGCTCGGTTCGGTGAGAAGCCAACGTCAAGGCGGCGAGGCGGGCACAACACGAGCGCCAGCGGTGTCTACGCGACTGGCCGTTTGCTCGCCGCTCGCCGCCGTCCGCGGCATCTCATCAATCGCACTCGACTAGCGTCCACCGTCATGTCGTCCCCAAGCGCTCAGCTGCGTCTGACGGGCCCACGGGCCACGTCGGCGGGCTTGTCGAAGCCTCAGCCTTGGGCGTTGCCCCTGCGAGGCGGCAGTTTCCGGTCGTGAGGGGCTCTCTTCTCATCGAACCTCTGTGCCTTGTAGGTTCGCGTGTGCGCAATGAGTTGTTGCTGATGCGCACGGGCTGACGGGGGATGAGCGATGGTGGGGCACCGGCCGACGGATTGGCATGTCCTGGACCTGGACAAG # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.55, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCCTGCGGGGGTAGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCCCGCGGGGGTAGTTCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 12904-15922 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHSTB010000012.1 Streptomyces olivaceus strain MM1-13 Scaffold11_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 12904 28 100.0 33 ............................ CCCTTGAGCATCGGCATTGAGGACGAGGACCTG 12965 28 100.0 33 ............................ CTCACCCGTCCCGTTGCGGTAGGCCGTGGCAAC 13026 28 100.0 33 ............................ GATCATCAGCGGGCCGATGGGTGCCGGCACCAC 13087 28 100.0 33 ............................ CCGTGACAGGGGGAGGGGGTGTCGGCGCCGCGG 13148 28 100.0 33 ............................ CTGACGGCGGTCGCCCCGAACACGGTCCGGGCG 13209 28 100.0 33 ............................ CGTCGCCGCGACCCGTTGCGCCCCGCCGGGGCC 13270 28 100.0 33 ............................ CCCGTCCGCCCAGATCACCGCCGTCGAATACGA 13331 28 100.0 33 ............................ GTCCACCACTGCCTCCCCCAGGTCGTTTCCCCC 13392 28 100.0 33 ............................ GCCGCAGCCGCGTTCGAACCACGCGGCGACCGA 13453 28 100.0 33 ............................ CCCAACCCGGTCCAGTGCCTGTTCTGCGGCGGT 13514 28 100.0 33 ............................ CATCAACCCCGGCGACGTCACCGCCGGCGGCGG 13575 28 100.0 33 ............................ CTCGCCGAACAAGCTGGACAAGGGCAGCACGAA 13636 28 100.0 33 ............................ TCAGGCCCTCGACGCCATGACAGGCGTCCAGTC 13697 28 100.0 33 ............................ GCGGAAGGCCACTCCGGCGTCCGAGTCCACAAA 13758 28 100.0 33 ............................ CCACACCAGCCACTGGTGGGTCGGGGGATCCCT 13819 28 100.0 33 ............................ GGTGATTGAGTACCTCCGCCAGGACGAGGACGA 13880 28 100.0 33 ............................ CTGTCGGCGTACGCCTTCCCTCCGATGCCGGCG 13941 28 100.0 33 ............................ GTGGGACATCCTCGACCCGATGGCCGAAGCCAT 14002 28 100.0 33 ............................ GTCGGTGGTCCGCTTCAGCCCGTCGGCCTTCGG 14063 28 100.0 33 ............................ CCCCCACCCCGGCCGGACGGGCGCACCGGTACT 14124 28 100.0 33 ............................ TCGTGAATTACCCCCAGGTTCACCTCCTCGCCG 14185 28 100.0 33 ............................ CTGACAGACCGCCGTCTCGCACTCGGCCCCGTC 14246 28 100.0 33 ............................ CCATGAACGTCGGCGACCATAGCCGCAGATTTG 14307 28 100.0 33 ............................ CGGCCTGCCGACGGTCGAGGAGCGCGTGGGTCT 14368 28 100.0 33 ............................ GCCCGGCCTCGCTGAGGGCGTCGGCCGGGCTTC 14429 28 100.0 33 ............................ TGCGGTCACCGACCGTCCGGCGGGCGTCGAGGA 14490 28 100.0 33 ............................ CGCGCCCCGCTCCGGGGAGTCGTGGGAGGACGT 14551 28 100.0 33 ............................ CAGAATCCCTTGCTCCTGCCGACGCTTACCTCG 14612 28 100.0 33 ............................ CTGCACGGTGCAGGCCGGAACCAACGTCACCGT 14673 28 100.0 33 ............................ TCCGTACGTGGTGAGCGCGGAAGTCCCGTGCGC 14734 28 100.0 33 ............................ GGCACGGCCGCAGTCCAGGCGGCCCTGCGTAAC 14795 28 100.0 33 ............................ GTTCCAGGACCATTTCATCAACGGTGACACGGC 14856 28 100.0 33 ............................ TCAGCGCCACCGGTCGTGGCGCCGCCAGCTGGC 14917 28 100.0 33 ............................ CGCCCTACCCCACGCCCGCATCACCACCCAAGG 14978 28 100.0 33 ............................ GCGCCGCACCGCGCTGCCCGTCCTCGCGGACGT 15039 28 100.0 33 ............................ CGCGGCCACGAACTCCGCACCGCCCGCAACTTC 15100 28 96.4 33 .........A.................. ATGACCCCCGCCTCGACCATTAGGTTGCGCAGG 15161 28 100.0 33 ............................ CGCGTACAGGTCCTTGATCCACTCGGCTTCCGA 15222 28 100.0 33 ............................ GACGCCGGACTGTCGGTCGGCACGATCAGGAAG 15283 28 100.0 33 ............................ CTGGCCGCCCGCGCCCGGCTGCCCTGAGGCGAC G [15305] 15345 28 100.0 33 ............................ GTTGCTCGGGGCGGCCGCCGACCGCGGTACCGG 15406 28 100.0 33 ............................ CGGGCCGGACGAGAGGACCAGGGCGGCCTGGTC 15467 28 100.0 33 ............................ TCCGCATCCAGGCGTTCCTTGCCGAGGTACGTC 15528 28 100.0 33 ............................ GGGCAGCACCCTGACGCTGCCGCTGACCGAAGC 15589 28 100.0 33 ............................ CTTGCTCTCCCCCCGCGCGATCAGCAGCCCGTC 15650 28 100.0 33 ............................ TGCCGGCGTCGGCCACACCGCGGGCACCCTCGG 15711 28 96.4 33 .................A.......... TGGAGTTGTGGGACTACCGGATACGACTCGTAT 15772 28 96.4 33 .....................A...... GACCGTCACGGTGCTGAGCATCGCGTACGCCGG 15833 28 96.4 33 ...T........................ CGAGGACCCCCTATACCTGCGGGCCATCGCCCC 15894 28 75.0 0 ...........C.........ACGACC. | G [15905] ========== ====== ====== ====== ============================ ================================= ================== 50 28 99.2 33 GTCGTCCCCGCACCCGCGGGGGTAGTTC # Left flank : CCCCCATGCGCCCCAACGGCAGCCCCGCCGCCAGCACCGGTGCGGCCTCGGCCGCGTCCATGGCCTGGAACGCCGGGCATGCCTTGCCGCAGTCGTGGATGCCACACACCCACATGAACCAGAGCCGCCCCCGGCCGCCGCTGACCTCGTCCAACCGCCGCCGGAACGCGGGCGCCACGTACCGGTCCCACATCACGCCGGCCACGGCAGCGGTGTCCAGCAGGTGCCCCAGCAGAAGATGCGTTCGACCGTCATTGCGTGCGGCAGACTTCCCCCACAACCGCGACACCCGCTGGACGACCTCGTCGTCCAACTCCATCGCCCGCATCAACGCAACGACCGACCGCTCGTCCTCCACGCCCCGCTCCCTCCCCTGAACCGAGCCGCATGCGGCTAGTTGTGAAGGAACCGTAAACGGTGCCACTGACAATGCCCTCCCGGGCCAAAACGAAGTGAAGGAAAACAGGTACCCTCCCTCACATCACCGCAGCTCACGAAGT # Right flank : CCTTTCCCCCGTGCTGCGTCTCACATACCTGTTGCTCGACACGGAAGTTACCGCGGCAGGGCCCCGCCCCTGGCGCGGACGCCGGTCCACTCGCACCACACCACCTTGCCCGGTGACCGTTCCGCCACTCCCCACTTGTCGGCCAGTTCCGACACCAGCAGCAGTCCGCGCCCGCTCTCGTCCGACCGGTCGGGGGCCTGGGGTACGGCTGGCACCCCGTCCCCGCTGTCGTGGACCTCGACGCGCACACCGTCCCCGCAGGGCAGCAGCCGCAGCAGGAAGCCCCTGCCAGGTGGTGCGCCGTGCACCAGCGCGTTGGTCGCCAGTTCGCTCACGCACAGCGCCACGTCGTCCGCGCGCTCACACACACCCCAGTCGGCGAGCACCTCGTGCGCGAACGCCCGCGCAGCTGGGACGGACCGGCGCTCTCGGCGGTAGAAACGCTCACGTGAGGAGAGGGGTGGAGTTTCGTTGTTCACGTGACGAGAGTCACGCTCCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCACCCGCGGGGGTAGTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCACCCGCGGGGGTAGTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 37588-34508 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHSTB010000011.1 Streptomyces olivaceus strain MM1-13 Scaffold10_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 37587 28 100.0 33 ............................ CCCTTGAGCATCGGCATTGAGGACGAGGACCTG 37526 28 100.0 33 ............................ CTCACCCGTCCCGTTGCGGTAGGCCGTGGCAAC 37465 28 100.0 33 ............................ GATCATCAGCGGGCCGATGGGTGCCGGCACCAC 37404 28 100.0 33 ............................ GATCATCAGCGGGCCGATGGGTGCCGGCACCAC 37343 28 100.0 33 ............................ CCGTGACAGGGGGAGGGGGTGTCGGCGCCGCGG 37282 28 100.0 33 ............................ CTGACGGCGGTCGCCCCGAACACGGTCCGGGCG 37221 28 100.0 33 ............................ CGTCGCCGCGACCCGTTGCGCCCCGCCGGGGCC 37160 28 100.0 33 ............................ CCCGTCCGCCCAGATCACCGCCGTCGAATACGA 37099 28 100.0 33 ............................ GTCCACCACTGCCTCCCCCAGGTCGTTTCCCCC 37038 28 100.0 33 ............................ GCCGCAGCCGCGTTCGAACCACGCGGCGACCGA 36977 28 100.0 33 ............................ CCCAACCCGGTCCAGTGCCTGTTCTGCGGCGGT 36916 28 100.0 33 ............................ CATCAACCCCGGCGACGTCACCGCCGGCGGCGG 36855 28 100.0 33 ............................ CTCGCCGAACAAGCTGGACAAGGGCAGCACGAA 36794 28 100.0 33 ............................ TCAGGCCCTCGACGCCATGACAGGCGTCCAGTC 36733 28 100.0 33 ............................ GCGGAAGGCCACTCCGGCGTCCGAGTCCACAAA 36672 28 100.0 33 ............................ CCACACCAGCCACTGGTGGGTCGGGGGATCCCT 36611 28 100.0 33 ............................ GGTGATTGAGTACCTCCGCCAGGACGAGGACGA 36550 28 100.0 33 ............................ CTGTCGGCGTACGCCTTCCCTCCGATGCCGGCG 36489 28 100.0 33 ............................ GTGGGACATCCTCGACCCGATGGCCGAAGCCAT 36428 28 100.0 33 ............................ GTCGGTGGTCCGCTTCAGCCCGTCGGCCTTCGG 36367 28 100.0 33 ............................ CCCCCACCCCGGCCGGACGGGCGCACCGGTACT 36306 28 100.0 33 ............................ TCGTGAATTACCCCCAGGTTCACCTCCTCGCCG 36245 28 100.0 33 ............................ CTGACAGACCGCCGTCTCGCACTCGGCCCCGTC 36184 28 100.0 33 ............................ CCATGAACGTCGGCGACCATAGCCGCAGATTTG 36123 28 100.0 33 ............................ CGGCCTGCCGACGGTCGAGGAGCGCGTGGGTCT 36062 28 100.0 33 ............................ GCCCGGCCTCGCTGAGGGCGTCGGCCGGGCTTC 36001 28 100.0 33 ............................ TGCGGTCACCGACCGTCCGGCGGGCGTCGAGGA 35940 28 100.0 33 ............................ CGCGCCCCGCTCCGGGGAGTCGTGGGAGGACGT 35879 28 100.0 33 ............................ CAGAATCCCTTGCTCCTGCCGACGCTTACCTCG 35818 28 100.0 33 ............................ CTGCACGGTGCAGGCCGGAACCAACGTCACCGT 35757 28 100.0 33 ............................ TCCGTACGTGGTGAGCGCGGAAGTCCCGTGCGC 35696 28 100.0 33 ............................ GGCACGGCCGCAGTCCAGGCGGCCCTGCGTAAC 35635 28 100.0 33 ............................ GTTCCAGGACCATTTCATCAACGGTGACACGGC 35574 28 100.0 33 ............................ TCAGCGCCACCGGTCGTGGCGCCGCCAGCTGGC 35513 28 100.0 33 ............................ CGCCCTACCCCACGCCCGCATCACCACCCAAGG 35452 28 100.0 33 ............................ GCGCCGCACCGCGCTGCCCGTCCTCGCGGACGT 35391 28 100.0 33 ............................ CGCGGCCACGAACTCCGCACCGCCCGCAACTTC 35330 28 96.4 33 .........A.................. ATGACCCCCGCCTCGACCATTAGGTTGCGCAGG 35269 28 100.0 33 ............................ CGCGTACAGGTCCTTGATCCACTCGGCTTCCGA 35208 28 100.0 33 ............................ GACGCCGGACTGTCGGTCGGCACGATCAGGAAG 35147 28 100.0 33 ............................ CTGGCCGCCCGCGCCCGGCTGCCCTGAGGCGAC G [35125] 35085 28 100.0 33 ............................ GTTGCTCGGGGCGGCCGCCGACCGCGGTACCGG 35024 28 100.0 33 ............................ CGGGCCGGACGAGAGGACCAGGGCGGCCTGGTC 34963 28 100.0 33 ............................ TCCGCATCCAGGCGTTCCTTGCCGAGGTACGTC 34902 28 100.0 33 ............................ GGGCAGCACCCTGACGCTGCCGCTGACCGAAGC 34841 28 100.0 33 ............................ CTTGCTCTCCCCCCGCGCGATCAGCAGCCCGTC 34780 28 100.0 33 ............................ TGCCGGCGTCGGCCACACCGCGGGCACCCTCGG 34719 28 96.4 33 .................A.......... TGGAGTTGTGGGACTACCGGATACGACTCGTAT 34658 28 96.4 33 .....................A...... GACCGTCACGGTGCTGAGCATCGCGTACGCCGG 34597 28 96.4 33 ...T........................ CGAGGACCCCCTATACCTGCGGGCCATCGCCCC 34536 28 75.0 0 ...........G.........ACGACC. | C [34514] ========== ====== ====== ====== ============================ ================================= ================== 51 28 99.2 33 GTCGTCCCCGCACCCGCGGGGGTAGTTC # Left flank : CCCCCATGCGCCCCAACGGCAGCCCCGCCGCCAGCACCGGTGCGGCCTCGGCCGCGTCCATGGCCTGGAACGCCGGGCATGCCTTGCCGCAGTCGTGGATGCCACACACCCACATGAACCAGAGCCGCCCCCGGCCGCCGCTGACCTCGTCCAACCGCCGCCGGAACGCGGGCGCCACGTACCGGTCCCACATCACGCCGGCCACGGCAGCGGTGTCCAGCAGGTGCCCCAGCAGAAGATGCGTTCGACCGTCATTGCGTGCGGCAGACTTCCCCCACAACCGCGACACCCGCTGGACGACCTCGTCGTCCAACTCCATCGCCCGCATCAACGCAACGACCGACCGCTCGTCCTCCACGCCCCGCTCCCTCCCCTGAACCGAGCCGCATGCGGCTAGTTGTGAAGGAACCGTAAACGGTGCCACTGACAATGCCCTCCCGGGCCAAAACGAAGTGAAGGAAAACAGGTACCCTCCCTCACATCACCGCAGCTCACGAAGT # Right flank : CTTTCCCCCGTGCTGCGTCTCACATACCTGTTGCTCGACACGGAAGTTACCGCGGCAGGGCCCCGCCCCTGGCGCGGACGCCGGTCCACTCGCACCACACCACCTTGCCCGGTGACCGTTCCGCCACTCCCCACTTGTCGGCCAGTTCCGACACCAGCAGCAGTCCGCGCCCGCTCTCGTCCGACCGGTCGGGGGCCTGGGGTACGGCTGGCACCCCGTCCCCGCTGTCGTGGACCTCGACGCGCACACCGTCCCCGCAGGGCAGCAGCCGCAGCAGGAAGCCCCTGCCAGGTGGTGCGCCGTGCACCAGCGCGTTGGTCGCCAGTTCGCTCACGCACAGCGCCACGTCGTCCGCGCGCTCACACACACCCCAGTCGGCGAGCACCTCGTGCGCGAACGCCCGCGCAGCTGGGACGGACCGGCGCTCTCGGCGGTAGAAACGCTCACGTGAGGAGAGGGGTGGAGTTTCGTTGTTCACGTGACGAGAGTCACGCTCCGTG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCACCCGCGGGGGTAGTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCACCCGCGGGGGTAGTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 48080-49632 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHSTB010000011.1 Streptomyces olivaceus strain MM1-13 Scaffold10_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 48080 29 100.0 32 ............................. GTGGCCCGGACGGTCATCACGTTGACCGTGGG 48141 29 100.0 32 ............................. GCGCCCCCAGTCGACGGACTGGGGGCGCGTGC 48202 29 96.6 32 ............................G ACGCTCGGAACCTTGATCGTTCTCAAGTTCTC 48263 29 96.6 32 ............................T ACCAGCCACACCTCCCGGAACAGTGACGGGAA 48324 29 96.6 32 ............................G CGTGTGGGGAGTCCGCCGCGGAGGCCGAAGGC 48385 29 100.0 32 ............................. TCCTCACGCGCCTCAGCGACCACCGGACTGCC 48446 29 100.0 32 ............................. TGGCGGGCGTCCTCGGGCCGGGGGACGTCAAC 48507 29 96.6 32 ............................G CGGGACACCGAGGATGCCGTGCGGTCCCGCAT 48568 29 100.0 32 ............................. CGCCCTCGCCTGGGACCGCTGGCCCGACGGCT 48629 29 96.6 32 ............................G GCTGTGGCCACGGGTTGACGCTGCGGCAGTCG 48690 29 100.0 32 ............................. TCGGCGGTGCCGTCCGCGCGGATGATCCACCC 48751 29 96.6 32 ............................G GTGGCCGAGCGCCTCGGCGTGTCCCGCCGGAC 48812 29 100.0 32 ............................. CGGGCCTTTTTGCGTTGGGGCCCTGGTCAGGC 48873 29 100.0 32 ............................. CTCGGCAGCGATGACCGCGCGCTGCGTCTCGC 48934 29 96.6 32 ............................G ACCCTCACGGCCCTGCGCGCCGGGAGCTCCCC 48995 29 96.6 32 ............................G CTGAAGCCCTGCAAGGACTGGCTCGCCTCGCA 49056 29 96.6 32 ............................G ATCGCAGCGCTCGCGCTCCGCCCGGAGGGCTG 49117 29 100.0 32 ............................. AGGCACAGCGGGCCAGGAGCGCCCTCCGCGGG 49178 29 100.0 32 ............................. CCGGGTCTGCATCGACGACGACTTCGGACCGT 49239 29 96.6 32 ..T.......................... CGAGAGGACTCACATGCCCAAGAAGACCAACC 49300 29 96.6 32 ............................G CAGGTCAACGACGTTCACGGCCACGCCGCCGG 49361 29 96.6 32 ............................G CCGCGGGCGTCGCTGGCGAGGCTGAGCGTCCA 49422 29 93.1 31 ..........T.................T GGGACGTGGCCCGGTACTGGCCGGGCCGGTC 49482 29 93.1 32 .......................T.C... CGCCAGGACGTGTCGCCGCTGTAGGCGGTGCA 49543 29 82.8 32 .............T.A..T......C..G GAGCTGCGCGGCCGGTGCCCCGTACGCCGCGC 49604 29 75.9 0 ....C..A.............ACG.CC.. | ========== ====== ====== ====== ============================= ================================ ================== 26 29 96.3 32 GTCGTCCCCGCGCCTGCGGGGGTAGTTCC # Left flank : GGCAGCGACCTGCTGGACGAGGACCTCGGCGCCCTCTGGGACGACGGCGACACCGTCGTCAGCGGCGGCCGCAACTGGAGCGCCACGCACCACCTCGACATCATCCCCGAACCCACCTCCGCAGAGGCGGCCCCGTGAGCGCCGGAACGACCGTAGTCGTACTCATCGCGGCCCCACCCGGCCTCCGCGGACACCTCACCCGCTGGTTCGTCGAGGTGGCCGCCGGCGTCTACGTCGGTAACCCCAACCCCCGCATCCGCGACCGCCTGTGGAGCGTCCTCGCCGAACGCATCCACGACGGCCAGGCCGTCATGATCGAACCGGCAGCCACCGAACAGGGCTGGTCGGCCCGCACCGCCGGCCGCGACCGCTGGACCCCCGTCGACTTCGACGGCCTGACCCTCATGGCCCGCCCACGCCAGAACGGACAACCCTGGCGGCCCACGAACGAGGTAAAGCAAAACGGCATGATCACCTGACAAAACACCAGCTCACGAAGA # Right flank : CTTGCAGAGCTTTGTGTGGACGGTGGAAGCGAGGCGGTCGTCTTCTCCAGGCGGATCGGAAACCGCGGAGCGCCGCCGTGGCCGTCATGATGACGATATACGGCTCGGTTCGGTGAGAAGCCAACGTCAAGGCGGCGAGGCGGGCACAACACGAGCGCCAGCGGTGTCTACGCGACTGGCCGTTTGCTCGCCGCTCGCCGCCGTCCGCGGCATCTCATCAATCGCACTCGACTAGCGTCCACCGTCATGTCGTCCCCAAGCGCTCAGCTGCGTCTGACGGGCCCACGGGCCACGTCGGCGGGCTTGTCGAAGCCTCAGCCTTGGGCGTTGCCCCTGCGAGGCGGCAGTTTCCGGTCGTGAGGGGCTCTCTTCTCATCGAACCTCTGTGCCTTGTAGGTTCGCGTGTGCGCAATGAGTTGTTGCTGATGCGCACGGGCTGACGGGGGATGAGCGATGGTGGGGCACCGGCCGACGGATTGGCATGTCCTGGACCTGGACAA # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.55, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCCTGCGGGGGTAGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCCCGCGGGGGTAGTTCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 55674-56130 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHSTB010000011.1 Streptomyces olivaceus strain MM1-13 Scaffold10_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 55674 29 100.0 32 ............................. ATCACCACGCGGTTCACGGTGGTCGGTTCCGT 55735 29 100.0 32 ............................. ACCCCAGCCACATCGGCCGGGGGCTCCTTGGT 55796 29 100.0 32 ............................. TGGATCGGGACCTGGAGGACCCAGGAGAACGT 55857 29 96.6 32 .........................C... GACCAGCTCAACGCCCGATGCTGGGTCGACGG 55918 29 93.1 32 ...........A.....A........... GTGTACGTGCACGGGTTGCGGAACTGGTACTC 55979 29 96.6 32 .............G............... TTCGTGGAGTCGTGGATCACGCCGAGGGTGAC 56040 29 75.9 33 ........T..A..A..........GTTT GGCGGGTGCGCAGGTAGAGGCGGTCAAGCGGCG 56102 29 69.0 0 ..A..G.G....T.A.T..CA..C..... | ========== ====== ====== ====== ============================= ================================= ================== 8 29 91.4 32 CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : CTCCGGTCGGGAGAACGAGGAGGAAGCCTGGGGCAGGTTCCGCAAAATGCTCCAGCCGAACAAGCTCGACCGCACCGAGGTGCCGTTCGTCAAGATGCGCTACGACAACACCCGCACACAGAGCATGAGCAAGGGCGACGCCCGCGGCTTCGCGCCTCTGGACACTCTCGTGCGGGAACTGGGGCTGCTCGACGGTGCTCCCGGCAGCTTCGTCGAGTGGGAGAACCGGCACGGCGCCGTCTGGCGGGCGGACAGCAACAGCGACGGCCTCGAGCTGGCACACGACGGCACGCGGGAAACGGTGGACACCGGCCAACTGCAGGCTACGGCCCGCACCAGCGTCCAATGAGCCCGGTCCCGTGCCCATTGCCCACAGAGCCTGCGTAGACGCGCAAGGTGAGTCCGACTTGCATCACATGCTACTCATGCCCCATTTGCCGGATCTTGTAAAAGTCACTGAAAACGTGCCCCTGAGCCCATAAACTCCCAGGTCGGACAGT # Right flank : CTGCGCGGTGGCTGGCTTGGATGGTGTTTCCACCGCACCGGTCGAGACGTTGTGGACCGGATCAATAGGTGAGCGTCATCCGGGTTTCCGGCTTGCTGATGGTGTGGCCTGGGGCGTCCCCGGTGTCGGAGGGCGTGATGGTCAGTCGTGGTACTGCCAGGCGGGCGGCGCCCCACGCGTCGATGTGGGCGACGAGGTCTCGGGCCAGTTCCTCGCCGCGTTGTCCGTATGCGGTCGCGCCGAGTCGGAACGGGCGTTGCGGGTCGGCGTCTTCGCGGGTCACGGTCAGGTAGGCGAGGGAGGCGTCGTCGATCAGGGCGGGGGTGCGGGCAGGTGTGGCGGGCCTGCGGATCAGGGCCTGCTCCATGGCCTCGGGGGTGGCTTCGAGGCGGCATACGCGGTCGTCGTGGGCGCTGGCGCGCAGCCATACTCCGTCGAAGGACTCCTCGCCGCCGATCCGCTGGGCGGACAGGACCTCGCGGGCGGGGTTGTCCGCTCGC # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.57, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 66928-67506 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHSTB010000011.1 Streptomyces olivaceus strain MM1-13 Scaffold10_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 66928 29 96.6 32 ............................G ATCGGCGGATAGATCCGGTCGGTGGGGATGAA 66989 29 100.0 32 ............................. GTCCGCTTCGGCGCGCGTGGCGTGGCGCGTAG 67050 29 100.0 32 ............................. CGGTTCGAGCGACAGACCGGCATCACGCTGGG 67111 29 100.0 32 ............................. GAGCCATCGACGACGGGTACGAGATGGCCGCC 67172 29 100.0 33 ............................. ACCTCCCGCCGCTCCAGGTAGCCGTGCTCGCCC 67234 28 96.6 32 .....................-....... ACGAACCCGGCGACGTCGATCCCCGCCATCGG 67294 29 100.0 32 ............................. ACCCCACAGTCCCCGTACTGCTCGGTGGTCGT 67355 29 100.0 32 ............................. GACAGCAGCCGGCCGGTGCGGCCGTCGTACAG 67416 29 100.0 32 ............................. GGGTCCGTGACCATCGCGGAGAACGGCGTCAG 67477 29 89.7 0 .............T..........AC... | C [67499] ========== ====== ====== ====== ============================= ================================= ================== 10 29 98.3 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : ACACATGTTCACCCGACGACCGCGACCGGGCCGAGTGGCAGCCCGGCAACCCCGCCTGGGGCCACTGCGACATCACGGCGTTGATCGTCAACGACATCTTCGGCGGCGATCGCGTGGTCGGCGAGGTGTACCTCAACGGTGCTCAGCGCAACTTCCACTGGTGGAACCGGCTGCCCAATGGCATCGAGCTCGACCTGACGCGCGAACAGTTCCGCCTCGGACAAACCGTCACGGCCGCCCGTGTCGTCGAACGCCCGCCCGGCCCGCTGCCCCGTCGCTATGAGGAGTACCTCCTGCTCCGCGAGCGCATGGCCGAACACCTCAGCCCGCTTCCGGAGCCTGCGTGAGGGAGAGCCATGCGGCAGTCGGAATCCGCCGGAGCTGTGGTCGACCAACTCTGCGTACGTTCGGACCGATACCGCGGGGTGCCCTATTTGCCGGAATCTTCGAAAGTCACTGAAAACACGCCTCTGCGGCCATAAACTCGCAGGTCAAACAGT # Right flank : CTGCGGAGATCGGCTTCAGGGTCGCTGGGTCAGTTCACTGGAGCTTCTCGCGCGTCTGCGCGCCGCTGGTGGGCGGCGCGCAGACGGGTGGGGTGTGCTCGGTGCGGGGGCGGTCAGGCCCAGCAGCCGTTGACGGTGGCGGCGAGGCCGTCCATGGCGTCCTTGATGTCCGTCGGGTCGGCCGTCGAGTTGTTCTCGATGAAGGAGAAGATCCGCCAGTCGCCGTCCTCGGTCTTCGTGACACCGCTGAGGGCGATGGCGCCGGTGAGGGTGCCGGTCTTGGCCTGGACCTTGCCGACGGCGCACTCGGAGTTGGGGTCGTCGAAGCGGCCCCACTCCGGGCCGAGGCTCGCCCCGGCCTCGCCGGCGACCGGCAGGCCCTCCAGGATCGAGCTGAGGGCGGGGGACTCGGTGATCGAGTCGAGGAGCTGCGCGAGGGTGGCGGCCGGGATGCGGTCGTCGCGGGAGAGGCCGCTGCCGTCGTGCATCTCGAAGTTGTC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //