Array 1 5019-5319 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHOMZ010000012.1 Prevotella copri strain MSK.10.30 NODE_12_length_90208_cov_234.32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================== ================== 5019 37 100.0 28 ..................................... CTTGTCGCTCACGTTCTCGAAGAGATGT 5084 37 97.3 29 T.................................... ATCCTTCAGATCAAAGCCAAATCCATACT 5150 37 100.0 28 ..................................... TTAGACAACCGAGCCATCGGTTAAAATG 5215 37 100.0 30 ..................................... TTCATCATCATGGCGTGGGTAGTTTTCACG 5282 37 86.5 0 T.............G..........AC.........T | T [5301] ========== ====== ====== ====== ===================================== ============================== ================== 5 37 96.8 29 GGATGAACATGCATTCTGAATAGTGGGTAAGTACAAC # Left flank : TGAAACTATCTGTGTGGAAAATCTTTCAATCAAGGATGGTATGTTGCAGGACAAGAAACATGGTAAGCATAATAAGCAAAAACGTTCTCGCAATAAGCTTATAGTTGATGCAGCTATGGGCATGTTGCGTATCAAGCTGCAGCAGAAATGTAAGTCGAAAGGAATCAACTTCATCAAAATTGAACGTTATTTTCCTTCTTCGAAGACTTGCCACTGTTGTGGAAAAATATTTAAAGGTTTACAGTTAAGTCAGCGTTCATGGGTGTGTCCTTCATGTCGTGCAAAGTTGGATAGGGATGTGAATGCTGCTATTAATATTAAAAATTTTGGAATTAGCAATAGTTCCCTAGGGAGGTGTACCCCCGAAGTTAAGTCTGTGGAGCATCGTAAACAGAAACGAAAAAATGCCAAAAGCAGTGACGTTTCAGATGTAGAGAAGCAGAAATAAGAGAGCTCTAACATTGAGCAAATGCCTGTTATACAGAATAATACTTATCTGA # Right flank : TATGGGTCGCTATTCGTCCGACAGACGTCTGATGGTTTTATAATCAAAATTTTCCATTAGATAAAATGTATATTACGTATTTGTTCTTCTCTACATGTCTGGTATGTTCCCTAAGATTCAGAATATGTAGGTGAAATTGGTAAATAAATTTAATTTATAGTTGATTATGGATAAGGCAATAAATACAACACTCATCATTGGAAATGGGTTTGATTTAAGTATGGGTAAACATACCGGTTATGCAGAATTTTTCAAAAAGCTGAAAGATGAAGGTTTTTGGGAAAAGCATTCTGGTAATTCTCTTTTAAATTTTATAGGAGAAAAGGGAAGTAAAGAATATTGGTACGATTTTGAGGATATAATTCTACATTATACCTTTGAAAGTGATAACGGCAAGAGATTAAAAGAGTTGGAAGATTTAAATAAAACGGATGATAATTTTACAAATGGTATTGTTTCTGAAGTAAAAGAAGGATTAGAACTCCTTAAAGTGGAGCTAG # Questionable array : NO Score: 2.90 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGATGAACATGCATTCTGAATAGTGGGTAAGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.80,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 1942-1262 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHOMZ010000040.1 Prevotella copri strain MSK.10.30 NODE_40_length_20712_cov_245.117, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1941 30 100.0 34 .............................. ATACTTGTCACCCCAACGACTACCAGAGCCGCCG 1877 30 100.0 35 .............................. AAGAGAGATACACGACAAGCATTCGGTGCATTAGT 1812 30 100.0 36 .............................. TTATTATCAATATCAACAACGTCGATAAGGAGAATC 1746 30 100.0 36 .............................. AGCTGGAGAAGCTGAACTATCCGGCAATCGTGTGCA 1680 30 100.0 35 .............................. TTCAGCTTCACCGGTGCAAGAGGTATCTCCGATGC 1615 30 100.0 34 .............................. GGCGATGCCTTATTCGGCTAAAACTTTTTCGGAA 1551 30 100.0 35 .............................. GCCTGCAATCTGAGTATGCCCATATCATCTATTGG 1486 30 100.0 34 .............................. GCCCTTATCAACTGTATAACCGGGCTTGTCAGCT 1422 30 100.0 35 .............................. ACGGTTGATAAAGGATGTAGATGTTACTGAACTGA 1357 30 100.0 37 .............................. TGCTTCATCAGTAAGTCCATCACCTCGCTGATGTCCA 1290 29 90.0 0 ........C................-..T. | ========== ====== ====== ====== ============================== ===================================== ================== 11 30 99.1 35 GTTCTAATTGTACCTTTATGGAATTGAAAT # Left flank : CCTTTTAAAATGTATTGGTGATATGTATGTGATTATAGTTTATGATGTTGGTGAGAAGCGAGTAGGCAAAATGTTGAAACTTTGCCGCCAATATTTGTGTTGGATTCAGAACTCAGTATTGGAAGGAGAATTATCTGAAGCTAAACTTCGGGAATTGCAAATGAAGATGAAAGCTATCATTGATGAATCCGAGGATAGTGTCATTGTTTTCACCAATAAAATGGGGTATAATATGAACAAACAGATTCTTGGAAAAGAAAGAATGACTACCGATAATTTCTTATAAAGAGTTGTCGATGTGGTTCTATTTTGCCGTTTCTAGGTTCGGAAAAACCTCCGAAAGTGTTCTTTGACTTATTGAAACCTCCATAAATAGGCAGGTTGTCGTAAGACCGCAGAAAAAATATCTTTAGGCATCGACATTTTTTCTGAAGATTTTTTGTATCTTTGCACCCGCAAACCTATTGATTCTTCGAGCATCTATGCCTAAGGATTAACGG # Right flank : CAGAAGTACTGATAGCTTTAGTATTATACCGCAATCTCTAGTTATAAGTGTTCAGAATGTGTCTCCTCCTGCCACAGCATTCGTCTCCTCCGGTCACTGCATTCGACTCCTTCAGCTATCGCATTCGTCTCCTTCAGCCACTGCATTCGACTCCTTCAGCCACTGCATTTGACTTCTTCAGCTATCGCATTCGTCTCCTTCAGCCACCGCAGCCGTATGTGTCAACTCAATGAAGTAGATGAAGTCGTGAAATGAAGTGGATGAGTTCGCATAATGAAGTTCATGATTTCGGCATAATAATTAATACATGTAATTGGTAAAGCAAAAAGTGGTTGTTCGGAATTTCCGAACAACCACTCAATATGGTGCTTTAGAGGGGAAAACGCAGAGTAATGAGGTGAAATACTATAATCTCAATGTTATTATCTCTGTGGGGCATCATTCCCCATGGGACAAAAGTCGCTATTGCCTTCTACTTATCGGTTAGTTTATCCAATTGT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTAATTGTACCTTTATGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA //