Array 1 43264-43415 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJO010000015.1 Nocardiopsis algeriensis strain CECT 8712 Ga0436954_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 43264 30 96.7 31 .............................C CGGGTTCCCACCGGGGTGGGGGTTCCCCTAT 43325 30 96.7 31 ....................T......... CGGTATCGGGTCGACTTCTCGCGGGGCCAGA 43386 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =============================== ================== 3 30 97.8 32 CTGCTCCCCGCGCACGCGGGGATGGACCCG # Left flank : CTGCCCGGTCTGCGGCCACCCCTCCTGCCGGCACCGACGAGCCCAGCAGCTGCCCCGCCTGGGCGGACACCGCGCTGAATACGCCCGCGAACACGCCCACGCCGCCGCGCTCCAGCGCCAGTACCGGCACCTGATCGTCTACTACGGCGAGGCCACCCAGTCTTTCTGGGCCGTCACCCCCGCCGGCCTGGTGGAGGGCCGCGACATCGATGCCCTCCTGTTGGCGCTGTGGCCGCACATCCAGGGATCTGTTGTTCGAGGCGGCCAGAGGCAGGTGACAGGCGGTGCCGGGGTGGTGGCTGCCGCCTGACAAGAGAAAAGCAGCCTGCGGCGGGGAGTAGGTTCTGGGGGCGTGGAGCCTTTTAGGCTGGTCAGTGGCCGGGTCGGCGGGTAATTCTGTGGGGCTTGTCGTGTTTTATTCCTTTTGTTTGTTGGTGTCTGTTTTTCGCAAACTTGAAAAATCAGGCATCCTGGCGGGGTAAAGTCGCAGGTCAGCAAGA # Right flank : GGGTCTCCATATTCCCTTGAGAGCTCGTCGCATTCGGTGAGTCTGCGGTAGCAGATCAGGATGCAAGCAATGTCGGCGAAGGCCAGGAAGTGGTCGGCTCTGCGCTCGTAGCGGCGGTGTAGGCGGCGGCATCCGGCCAGTTTGGCCATGGTGCACTCGACCTGTGAGAAGGGTACGCACTGCGCCACAACATCGAGGCGGGTGTGCTGGTCCGCAGCCCCGAACAGGTGAGCGGGCTGGTCGGCCACTTCGATGCGCTCATGGGACCGGAGGGCCCTTTGGAGCGGGTATGAGGCCGGTTCTGTGACGACCCCTTGCGCAGCCCGCGGAGGCTTTCCCCGCAGATGACAGCGGACGTGGTGAGCCTCGCCGGACGCCGGAGAGCCGCCACCGGGCCGTGACACCGGAGGCCGACCCCCGGCGTCCTCGGAGAACAGGTGGGATCCGCCGCCGGTCCGAGAAAGAATCAGGACGCCCTTTCCCCTCGGACACCTGGAGAT # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 93118-92661 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJO010000001.1 Nocardiopsis algeriensis strain CECT 8712 Ga0436954_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 93117 29 100.0 33 ............................. CAGCTGACGGCGGAGGCGCGCGCTGCCGCGTAC 93055 29 100.0 32 ............................. GCGTGCTTCGCCCCGTCCGCTTCGGTGACGGT 92994 29 100.0 32 ............................. CAGCTCACGCATCCGTGGGGCGGCCCTAGAAA 92933 29 100.0 32 ............................. GCACACTCAGGGAAAACGCTGCGGACCCGACA 92872 29 100.0 32 ............................. AGGGCGGCGCCCATCCGCGAGGCCGCCTCTTC 92811 29 100.0 32 ............................. TCACCCTCCGACTACTAGGCGATAACCCGAAG 92750 29 100.0 32 ............................. GACTGGCCCAGCTATCCCACTACAGCCGCTCC 92689 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================= ================== 8 29 99.6 32 CTGAGCCCCACGCACGTGGGGATGGACCG # Left flank : CCTCCTCCAAGCCTGGCATCGGGGCTCGGTCCGCGTACAGCTCGGTCGTGGTGACTCCGAGCGCCTGGGCGATGGAGTGCAGAGTGCCGGTGGTCAGTTCTCCGCCCCTGTTGGGGTTCTCCGCCTTCTTGATCGTGGTCACACCCAGACCGGCTGCTTCCGCGAGTTCCTCCTGGGACATTCCCTGCTGCTTGCGCAGTGCCCGGATCCGGCTGCGCAGGCTGTCTTCGAACATGACAGCCCCGTCCTTTCCTGGTGTCGGCATCATCAGAGTAGGACGGGGCTCGCGCCATGTCAGGGGTTGATCTGATCTTCTTCGCCTCTTGGACCTGATACGGGTTGCCCGTGGCACCGGAGGGAGGAGACCAGGGCCCTTCACGTTTTGGGGAGTGCGGTCCTGCTGTGTGGTTGCCTATCCTGGAGCGGTATACGCGGGTTCGCCTTCTCGCAAGGAAGGTCTCGGCAAGATAACGGCCTGCGTTGTTCCAGGTCATTAAGCC # Right flank : CCGGCCATCAGCGCGGCCGCAGCTGCGGTTCTCCGGGAGCTGTGCCCCCATCGGCCGACTTCGGCGGGGCCGGTCCGTGCCATGGCCAAGGCAGCTCGCCGATCCCAGTAGCATGCCTGCGGGCCGCCGCCGATGATCACACAACCCGCCGTGTCCCCTGCGCGTTCGGCGGGCCGGGTTTTCGCCCGGCAGGGGCGGAGCGGTTTCCGGGACCGAGGAGGTCCCGTCGTGCGCAGCACACAGTGAGGAACAACCGGCTTGCACACGCACACCGCACCACCCGACACCCCGCTCCCCGACCGGGGCGGGGGCATGCCGCGCTGGCTTCCCCGCGCCATGCTGCTGGCCCTGTGGCTCGTGGTGGCCTTCGGGCTCGGCCTGTGGCTGTTCGTCCGGCTGCAGAGCCTCCTGCTCCTGCTGCTGATCTCGCTGTTCCTCGCGCTGGCCCTGGAGCCCGCCGTGAACTGGCTGCACCGGCACCGCTGGCCGCGCGGACCCGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAGCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 2 95688-95352 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJO010000001.1 Nocardiopsis algeriensis strain CECT 8712 Ga0436954_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 95687 28 100.0 33 ............................ CATCCCATCACCGGCAGAGCCGACATCCGGCCG 95626 28 100.0 33 ............................ GGTCGATCGTCTGCCCGAGGTGATCCGGTCCCT 95565 28 100.0 34 ............................ AGATCAACGACCGCAACATGATGCTGATCGCCGA 95503 28 100.0 33 ............................ GCACGGAAGCAGCAAGGCCCACCAGGAGCGCGG 95442 28 92.9 33 ....T....................G.. GTTCACACCGGAGCTAGCCCAACGCAGGACGCA 95381 28 89.3 0 .................AT........T | AC [95357] ========== ====== ====== ====== ============================ ================================== ================== 6 28 97.0 33 GTGAGCCCCACGCACGTGGGGATGGACC # Left flank : CCGCACCCGTCGTGTGGAGTCGCCGGGTCCACGGTGAGCGGGGACCTAGACCCTTCCCCGTCCGGTCCTCCTGTCCCGGCACGCGACCAAAGCGTAGCTCATGCACGTGCATATGTTCTTACCTCGGTAAGCACATGAGTAAGAACGACGGGCGATTTCCCCCCAGAACCGCACGTCACAGCTATCGCTCGGTCCCCACCGTTGGTTCATCTCAACAAGATCGTTTCCCACTCGTGGCCGAATCCGGCCACGTGGACGGGTTTCGGAGGAGTACGTTGCTGCCGGGCGGGGGTGTGCAGGGGCGTGTTTCCCGGGGGTGAGGTCCCGAGGAGGCGGTGGCCCGTGTCGTCCCAGGCCGTCGGGAGTGAGTCCTGCGTACGAATGCGGGGGGCGCGGTCTTGCCGGGCAGTTGTTTGTTCTGGGGAGGTGCTCGCGGATGTGTCTTCCCGCAGGGAAGGTCTCGGCAAGATAACGCCGCGCGTTGTCCCAGGTCATCAAGC # Right flank : CCTGGTATGGGAGCCAGCTGCTCAAGCACCTGGCGGGCGGCTCACCCGGGACAACGCCTATGCAGACGGCGAAGTAGTGCGGCCCCAGCTGGGACTCACCCTCATGTGGTCATCCCCGATCCCGGTACAAGCTCAGGTGCAGGTCCTGCCAGGTGCGCTGTACCGACGCCCAGCGCCCCGCATCCACCATTGCCCGCTCCAGGAACGTGGCTGGGCGGATTACGCGAGCACCGGCGGCCTCGTCGGCCAGCGCTTGGATGACCTTGGCCAGGGCCTGGCGCTGGGCGGTGTCCAGAGTGCCGTCGGCTATGGCCGCAGCCAAGGGATCAGGCCTCACCATCGGGGCTCCTGGGGCTCTGCGCCTTCCCCTCGCAGTGCCCGCTGGGCAGCGAGCGCGTCGGCGAGCTCCTCGATGCTGGCGGTGAGCAGGTGCGTGCGGATGCCGATCCGTGCTGTTCTGAGGTCGGGTCGCTCGGTGCGGTGGAGAGCCTCCCACCCAC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCACGCACGTGGGGATGGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 281518-281972 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJO010000003.1 Nocardiopsis algeriensis strain CECT 8712 Ga0436954_03, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 281518 29 100.0 32 ............................. CATGGACGGCCGTCAGCGTGCATCCTGCGGGC 281579 29 100.0 32 ............................. TCCTGCACTCCATGGCGTCGGTCTCCGAAGAG 281640 29 100.0 32 ............................. TCCTGCACTCCATGGCGTCGGTCTCCGAAGAG 281701 29 96.6 32 ............................G GGGGCCAGGGCCAGGGCGTCACCGACAGCCGC 281762 29 100.0 32 ............................. TTGGCCGGGATGGGCGGCCGGTGGGTGGAGAT 281823 29 100.0 32 ............................. CATGGACGGCCGTCAGCGTGCATCCTGCGGGC 281884 29 100.0 32 ............................. CCGGCCACCCGCGCTCAGGCGGACCGGCTCCA 281945 28 89.7 0 ....C............-.......A... | ========== ====== ====== ====== ============================= ================================ ================== 8 29 98.3 32 GTGCTCCCCGCACAGGCGGGGGTGAGTCC # Left flank : CATACGGCGCTCCAGCTCGGTGTGGAGCGGGCCGGTGTCGCGGCTCCGGAGGAGCTCTGCCGCGATCCTCTCGGGTCGGTGTCTCACGGCACCGACCCTACACAGGTGTTCGGTTCCGGACGGAGGAGGAAGGTGGAGGCGCTGTGGAGGTGGGCGATGCAGCCGAGTCACCGGTGCCATGCGCGCTTTCGCCTCGCGGGAAAACCCGTGTCCCGATACCGGAGCGACAGCGCGCACCCACGCCGTGGTCGTCCGCACACACCACCTGGCCGCGATGGGCCGAGCCCGTTTTTCCGCGCCCGGCGCCCTGTCTGCACCGAGGCGCCCCGGTGACAGGTTTCCCCGGCACGGTCCCGGGAGTATTCTCGACCTGTCGAGGAGACCAGGCGAGCGAGGTCCGGTGCTTCATCCCGTGTGGATCCGTGTCATGGGGTGGCCTGGGGCTCGCGCACTTTGCATCTCATATCGATAACGCGTCACGTTTCCCCAGTACAGCAAGG # Right flank : CACCAAACAAGGCCGTCCGGGTGACGCCCTTACGGGGCTGCGTACGGGAACGAACCGTACTGTTCTGGTTGAGGGGCCTTCGCGAGGGAACGTGCGATCAGCCTTGCTGAGTAAGAAGTCTGGTTATGACCGGGATGGTTTAGTAGCCGCAAACAGTTTCGAAAACCTCATGCTGTGATTCCTCAAGGCTATCAACTCAGGCCTCGCGATTCCAAGAAGGAATCCCGAATCAGGGGCAGAGGGTGGTGAGGAGCTCGGCCCTGTCCGCAAGAACTTGAAAACCATCCCCCCGGACCAGTTGCTTGGGTAGCTTTGACCTACGCTAGTGCTTCGCACAGCACAAGCGCAGTACCCCTCGAGCGCGACCAGCTGGGACTTCGCATGGAGCGAACGCGTCACCCCGACAAAGATCTCGAAGCTGTGCTGCGGGCAGCAGAGGGGCAAGGCTGGCGGGTCACTCGCAACAAGAAGTACTTCAAGATGTACTGAGGTGATCTCAG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACAGGCGGGGGTGAGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCCTACGCGGGGGTGAGTCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.90,-11.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 68246-67303 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJO010000009.1 Nocardiopsis algeriensis strain CECT 8712 Ga0436954_09, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 68245 29 100.0 32 ............................. CTCGCCCATTGGGCGAACCCTTAGACCTCGCC 68184 29 100.0 31 ............................. CCCCTACCCCCCGCCACCCCGAGGGGCAGCC 68124 29 100.0 32 ............................. ACCAGGATGATCCCGTAGGCGCGCGCCTTGCG 68063 29 100.0 32 ............................. TCGGGGCTGCCCTTGATCCCGATCGCGGCCAG 68002 29 100.0 32 ............................. GGAATCAACGGCGCTCAGTACCTCTTGGAGAA 67941 29 100.0 32 ............................. CTCCCCCCCGATCTCGACCATGCGCGGCGCGG 67880 29 100.0 32 ............................. GTCAGGCCACAGTCGCGGGTCCAGCCGGGCAG 67819 29 100.0 32 ............................. TCGAGTTCGACGACGGACAGACCGTCGAGGAC 67758 29 100.0 32 ............................. CCTCGATTCAGAAGCAGCGGATTCAGTTGCGG 67697 29 96.6 32 .....T....................... TTGCGCCAGCGAGCGCGCATCCGCTTGCCCGC 67636 29 96.6 32 ............................G TTGGGCGACCCTGAGTAGCGCCCGGCCAGGAT 67575 29 96.6 32 ............................G AGCCGACGGGACTGGCCGGAGTCCTGGTGAAC 67514 29 96.6 32 ........................A.... GGCGACCGCCAGCGCCCCGCTGGCCTGGATCG 67453 29 100.0 32 ............................. GGGGCGGGCCACGTACCGCGTACCTGCCAGCG 67392 29 93.1 32 .........................A..G ACGTAGGGCTGAAGTTCGCGTGTCACAGGCCC 67331 29 72.4 0 ....A......CT.......C.C..A.AG | ========== ====== ====== ====== ============================= ================================ ================== 16 29 97.0 32 GTGAGCCCCACGCACGTGGGGATGGGCCC # Left flank : GGGACCCGGACGAGAGCGGCGGCGCGCGGTGCTCGCGCACGGGCATGGCCTTCTCGGAGGACGAGGCCCACGAGGCCGCCCGCAAACACGCCCGCGCCCACCGCCGGACCAACTGACCAGCAGACGAACGTAGTCCTGATCCATCCCCACGTGCGTGGGGATTACCCGCTGTGCGAGGCCGGCGGGGACGAAGGCGTCCCACAAGGCCATCGAGACGGCGACGCTGTCCAGGACATGGCAGATGTGCGGATGGCGTGCACCATCGAGGCCCCGCTCTTTTGCCCAGAGCCGGAGATCGATGTAGGAAGGGTGGCTCGGGCTGGACGTCACTATGGGCATGCGCTCCGTGTGACCATGGGGGATGGAATGTGGTGAAGACCGTAACGCTGGTGCGGGTTCCCTGTAGGACCTTTGGGGAGAGTGGCCGGAGACGGCCATTTTTCCTACTAAGGGGTAGGTCCCGCGGAGATAACGACTAGCGTTGTCGCAGGTCAAAAAGG # Right flank : ACCGGTCTTCCGCTCCTCGTCGGTGCCGGCCGGACCTCCCGTCTCCACGGCCCCCCGGGTTGGCACTGTCCGCGCCTTCGGTGGCGGGCACAGCGTCGGCCCCTGGGGAGCGTGAGGTGTCCGCCCCGTGCGGTGGCCTCCACGGGGCCGGGCGGGTCAGGGTTCTTCGGTGTCGGGGTGCTGCTGCGTACCGGTTGCGGCGGGTTCGGTGGAATCCGTGGTGGTTTCCTGCGGTCGGCGGGTCCGGGCGTTCCGGCGGTCGAGCGCTCCGGCGGTCAGGGCGATGGCCAGGCCGACCAGGGTCAGGGCGGCGCCGAGGGCGGCCGGGGAGGTCAGTCCCAGTCCCGCGCTGATGCCCAGGCCGCCGACCCACGCGCCGCCGGCGTTGGCCAGGTTGAACGCCGAGTGGTTGGCGGCCGAGGCCATGGTCGGGGCCGAGCCCGCCTTGTTCATCACCAGCAGCTGCAGTGGTGTGGTCACCCCGAAGCCGATCGCCCCCA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCACGCACGTGGGGATGGGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA //