Array 1 42899-43812 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAOQZ010000009.1 Escherichia coli strain MVAST5635 NODE_28_length_53120_cov_25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ================================ ================== 42899 27 100.0 32 ........................... TTGGGGCTGGGGTTCGGTAATCAGATTATTGA 42958 27 100.0 31 ........................... TGCACGCCCTGCCGGAATCTCCCTCGCTCTC 43016 27 100.0 32 ........................... AGTAAGCCGGTTGATTATCGCCGGGGATATTA 43075 27 100.0 32 ........................... AGATTCGCGCAATGTACGGTAAAGACAGCACC 43134 27 100.0 31 ........................... GATTCTGCACTCTTTGATGTAATGGTACTGC G [43153] 43193 26 96.3 31 ..................-........ CCATTCTTGTTGTCGTTCATCAAGCGCAGGG 43250 27 96.3 31 .....T..................... TTTGTTTTGATGATTTATCAGTATATGAATT 43308 27 100.0 31 ........................... ATTTTGCGCGGCCTGCATGAAACCAGTGGCA 43366 27 96.3 32 A.......................... GTACCGTTGAGCAATGGTGGGTAAATGGTGCT G [43385] 43426 27 100.0 32 ........................... ATTTAGATACGGCACACAGGAATGCGCTGGAT 43485 27 100.0 32 ........................... CATGGGAGTCCAGATTACAAATTCCAGAATGG 43544 27 100.0 32 ........................... CGCCAGTCTGAGGTTTTCCGGTCATACATCGT 43603 27 100.0 32 ........................... ACCGTTGCTACACATATGATCAGGCATGTGCC 43662 27 100.0 32 ........................... GACGATGAGACGCCCTGGTGTGCCGCGTTCGT C,G [43667,43679] 43723 27 100.0 32 ........................... CGTTTAGCTCCGCAATGTTGGATATCACTGAT C,G [43728,43740] 43784 27 92.6 0 ..........A...............A | C,A [43789,43804] ========== ====== ====== ====== =========================== ================================ ================== 16 27 98.8 32 GAGTTCCCGCGCCAGCGGGATAAACCG # Left flank : ACTGGATGAATTGCTTGCGACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATTACACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTCTTTGTCGCCTCTAAAAAACCTCCATTTTGCCCATCCTGGACTAATCATTATCATTTTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTACGTCGGAGTTTGGTGGATTTTAGTCGGTATAGAATTACTTTAAATATTTGGCTTTTCAATCAATGAATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGTTTCTGTTAAGTTGGTAGATTGTGACTGACTTAAAAATCAATAATTAATAATAGGTTATGTTTAGT # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTATTAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGCTCTCCATATATGAGAAGTTCACAATTATCGATACAAAAAATCAAATTTAATCAAAGTGTTATTTGTATAATCCTTAAACCGTTAAGAAATTTTAACATATTATTTTTTAATATTAATTAATGCCTGTTAATTTTTCTTTAGAATAACAGTGTATTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAATCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTTAT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCGCGCCAGCGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.20,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 828-6 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAOQZ010000063.1 Escherichia coli strain MVAST5635 NODE_61_length_934_cov_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 827 29 100.0 32 ............................. TTGGGGCTGGGGTTCGGTAATCAGATTATTGA 766 29 100.0 32 ............................. TGCACGCCCTGCCGGAATCTCCCCTCGCTCTC 705 29 100.0 32 ............................. AGTAAGCCGGTTGATTATCGCCAGGGATATTA 644 29 100.0 32 ............................. AGATTCGCGCAATGTACGGTAAAGACAGCACC 583 29 100.0 32 ............................. GGATTCTGCACTCTTTGATGTAATGGTACTGC 522 29 100.0 32 ............................. CCATTCTTGTTGTCGTTCATCAAGCGCAGGGG 461 29 96.6 32 .....T....................... TTTGTTTTGATGATTTATCAGTATATGAATTG 400 29 100.0 32 ............................. ATTTTTGCGCGGCCTGCATGAAACCAGTGGCA 339 29 96.6 32 A............................ GTACCGTTGAGCAATGGTGGGTAAATGGTGCT 278 29 100.0 32 ............................. ATTTAGATACGGCACACAGGAATGCGCTGGAT 217 29 100.0 32 ............................. CATGGGAGTCCAGATTACAAATTCCAGAATGG 156 29 100.0 32 ............................. CGCCAGTCTGAGGTTTTCCGGTCATACATCGT 95 29 100.0 32 ............................. ACCGTTGCTACACATATGATCAGGCATGTGCC 34 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGTTTCTGTTAAGTTGGTAGATTGTGACTGACTTAAAAAATCAATAATTAATAATAGGTTATGTTTAG # Right flank : GGACGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [3.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 16623-17322 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAOQZ010000010.1 Escherichia coli strain MVAST5635 NODE_10_length_195472_cov_25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 16623 29 100.0 32 ............................. ACAATCAGATCACGATCGATGCCTCGCGTGAG 16684 29 100.0 32 ............................. ATTTTCGCAGCGGGTAACCGCGCCCGGCGATC 16745 29 100.0 32 ............................. CTCGTACGCCGTCTCACTCCGCGTGAGTGTGA 16806 29 100.0 32 ............................. GGATCAAATCTTTTGAGAGCAATTAAGGGGGA 16867 29 100.0 32 ............................. TTTATGTGGAGTATCAGTGCCTGGGTGGAAAG 16928 29 100.0 32 ............................. TGGGGCTGAGCATGGCTAAACAACCGAGGCGC 16989 29 100.0 32 ............................. GTCAACTGGCACCACAGGATGATGGCGGCGAA 17050 29 96.6 32 ............C................ CAGGTCGACCGACTGGAGGCGGAGATTGTCGG 17111 29 96.6 32 ............C................ TGTTGTTTTTCTGCCGGATTAACGCGGTGCGA 17172 29 96.6 32 ............C................ TTGTCGGGCTTGTTCGGCGCGGGTTGTTAACT 17233 29 96.6 32 ............C................ CCAGCGAAGGACTTGCTCGTGTGGTTAAAGCC 17294 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.9 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGCGATAGCGGTCACCGGGGACGCGGCGGATGAGTATGGTCGTCGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCGATCTGGCTCCTGGAAGTGCGTGCCGGTGTTTATGTCGGAGATACGTCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTGGTAATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGGTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCTGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGACGCACTGGATGCGATGATGGACATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAGCTCTCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCTTTCACCAGCGGTAGCATTATCCGTATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGTTGTTGATTATCAAGCCTGACATCGTGCCAGCTTGTTCCCGCAGGGAAGGCGGCGGTTTTTGCACGTTGCTGATAGCCATCCTTATTCCCAAGATTCCAGTTAGTTGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCAAAAACTTCCGCGTCGTTACAGCACCCGGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //