Array 1 21416-20107 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABPUG010000011.1 Campylobacter concisus isolate 2009-119100, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 21415 37 100.0 34 ..................................... CATCTTGTGCCCTTTGGCAACAAGATTATAGAAA 21344 37 100.0 40 ..................................... GAAGTTCAAAGATCTCTCGATCTTATCCCCATTCATTTCC 21267 37 100.0 38 ..................................... AGTTCTGTGAATATTTGGTGTATATCTGTGCTAGTGTT 21192 37 100.0 39 ..................................... GCTATTCCACTCACGAGAAAAAAATCTCACGGTAGAATT 21116 37 100.0 34 ..................................... TCGATAGCATCGACTTCTTTGCTTGACTTTCTTG 21045 37 100.0 38 ..................................... TATCGTTGTTGCTATCCATTAGCTGTAAGTTATTGAAG 20970 37 100.0 38 ..................................... ACAACGAAGAGTGCTCTTTCATTACCTACTGTCGTAAA 20895 37 100.0 36 ..................................... AATATGTTTGAAACCTGAAGGCACCTTAATAAAGAT 20822 37 100.0 37 ..................................... CATACTCTAGCTTTTCTCTCAGCTTCTCTACGAGTTA 20748 37 100.0 39 ..................................... GATAAGGATCGACGGAAAATGACGCAATTTCTCAGTTGC 20672 37 100.0 39 ..................................... AATAGTACTTCTGACCGTCTATATAGACAGAATCGTATA 20596 37 100.0 37 ..................................... TTATATCCGCAAAGAGTGTGCCCACTAGCAGTGCTAG 20522 37 100.0 40 ..................................... ATAGCGCTCGTGTCCTCTATGCTTATGCTATAATCCCCAG 20445 37 100.0 36 ..................................... GAAGACATGAAAGAGAGATTAAATTCCTTAACCTCC 20372 37 100.0 39 ..................................... AAATTTCTATATTAGCCCCTTGAGACAATAAATCAGCAA 20296 37 100.0 37 ..................................... ATTGGTGATATTTTATTGTTGAGATAAGCAACCGTGC 20222 37 100.0 41 ..................................... GTTAGGGCATAGTCTGTGAGACGATAATAATCATAGGCTAT 20144 37 91.9 0 ..............................C.A...A | T [20109] ========== ====== ====== ====== ===================================== ========================================= ================== 18 37 99.6 38 ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Left flank : GCTTTGAGCTATGCGATAAAAAAGGTATCTTTGAGATGCAAGAGCTCTTTGTCTAGCTTATGTCGTTCTTAAATTTCTTTTGGATTTTTGATTTGCGAACTTTTTTAGCTGAAATTTGACCCTTTTTAGCTAAAATCTCGCGAAATAGGTTCGCAAATCTAGTTTTTTCAAAATATCTCTCATACATTTGCGAACTTTTAGTTATGCCTAAGTTTAGGATAGCCTATTTTAGGACCTTGCGAAACTTATATACCGCTTAAAGTTCGCAAACCTATAAAATTTGAAATTTTTAAAAGAGATTTGCGAACTTTTTTAAGATGACAAATACCTAAATTTAGGGGTTCTTTTACTTATCATTGTTAATTTTATGGAGTTAGTATTTTTAAATACCTATACATTTGCGAACTTTTTTGAGATTTTCACGAATTTTAGGTATCTTTAAAGCCGGTTTCTTAAATAATTTTGCTAATTTTTCCTTTGCAAAAATAGTCTTTTAGGCT # Right flank : ATTTGGTAAAGTTGTAGATAGTGGCTTATATTGTTATTTGTAAAAATAAATGAGTGGTGCTTATATGCGTTTATTGGATAAATTTGGATAAGAACAGATTGACTTAGATTTATGAAAAACTACAATAAAGATAGGTTTTTGTGATTTGCGTAGATAAATAAAAGCTACGAAAACGAGCCATGAATTTTGCTTCATGGCTGCATGGGCCAACTATTTAGAAGTTGGCTTCATGCGAAATGTGCCCTTAGTGGTTTGGACTTTGGTATAGCCACCAAAGCTTTGACCCACTTTTTGGTGAGCACGAGCAGATGAGTAAGATCTGCTTGATGATGAAGAAGACTTTGAATAAGAACGTGAATAGCATTTTGCCATTTTAACCCCTTTGTGTTGAATTATTTTGTTTTGTTGGGAGAATTATAAAAGAGTGTATGGACATATTGTGTATAATTCATAAAAAACTTTAGAGAATATAAAGGATAAAGTAATGGACGCACAAACCA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 2 23595-23329 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABPUG010000011.1 Campylobacter concisus isolate 2009-119100, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================= ================== 23594 30 100.0 49 .............................. CTATGTAGATATGCTCTGCACCTTTTGCAGCCATATCTTGAACATTTTT 23515 30 100.0 47 .............................. CAAAGCTATGTATACACCACATCTGTCATCTCCACCTAAGCATTTAA 23438 30 93.3 47 ..............T..T............ ATTTAATATGCTTTCTGCATCGTATCCGCCTTTCTCGAATAATTTAA 23361 30 100.0 0 .............................. | AA,C [23334,23337] ========== ====== ====== ====== ============================== ================================================= ================== 4 30 98.3 48 ACAAATTTGACCCGATCAAGGGGATTGAAA # Left flank : | # Right flank : TTTGGTAAATGTAGGTAGTGGCTTATATTGTTATTTGCAAAAATAAACGAGTGGTACTTATATGCGTTTATTGGATAAATTTAGATAAGAATAGATTGGCTTAGATTTATGAAAAACTACAATAAAGATAGGTTTTTGCGATTTTCGTAGATAAATAAAAGTTACGAAAATGAGCCCCGCAAGATAAACCAAAAGAGAAATTTCTACGCCACCAAGATCGCCTCGGATTCTACACTTCATATCAACCAAATAGGTGTCTATCTAGGCCTTAGCAAAAATAAATTTACCATAAAGCAATACGGCAAAATTTATAAAGAATTTCCCATCTCTAAAATTTCCCGCATCATCGTTGATAGCGAGCATATCTCACTATCTTCTGCAGTGATATGGCGCTGCGCAAGAGAAAAGATCCACATCGATTTCATAGACAAGCACTACGTCCCATACGCTACCTTACTAGCCTACAATAGCACCTCTACACAGACAGCACACAAACAAGC # Questionable array : NO Score: 8.72 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:-0.04, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACAAATTTGACCCGATCAAGGGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 1 325723-324510 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABPUG010000004.1 Campylobacter concisus isolate 2009-119100, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 325722 30 100.0 35 .............................. TAAGCTTCTGCTTTGTTCTTGGTCTTTCTCTTTTA 325657 30 100.0 34 .............................. GATGAAGCTGAAGCAGTGACATCAAGCTTGCCAG 325593 30 100.0 36 .............................. TCACGAATAACCGAACATAAGCCACCAGAACAAGCT 325527 30 100.0 35 .............................. ACGGAAAGGATAAAAATCGTGGCTCTTGATTGTGA 325462 30 100.0 36 .............................. AAATCATCAGGCGGAAAATTTGTTTTTTGAGTTTCA 325396 30 100.0 39 .............................. AATTGTTTAATTTTTTTAGCAAAGCTTCGGATGCAGTTG 325327 30 100.0 37 .............................. TAACTCTCAAGAGTGGTAAGAAAAAGCTAGTTTATAA 325260 30 100.0 36 .............................. TAGTGTAGTAGAGGGCAAGCGCACTCTAGCTCATTT 325194 30 100.0 35 .............................. GTTACTTTGGGAAAATTTTTTAAAGACGAAATAGC 325129 30 100.0 34 .............................. ACAGCCCTATTGTATCGGCATAGACTATATGTTT 325065 30 100.0 37 .............................. TTCAGAAATTCCAAATATAGATAGTAACGTGGACGAT 324998 30 100.0 36 .............................. TGGTCAAGAATGTTGGTTTTTGTGATAAAGACTTAA 324932 30 100.0 37 .............................. ATGCGATTAACACGAAGCGAAAACAGAGCCTACCAAC 324865 30 100.0 35 .............................. CAAACTCATAAGCCCTAATATGCCCATATTTGAGC 324800 30 100.0 34 .............................. CCCAGACGCTCGCATAGTTTGTATCCGCGAAATT 324736 30 100.0 36 .............................. ATAAAAGCAAAAATTATCAAGAACTACCAAACTGGA 324670 30 100.0 35 .............................. TAAACTTGTCGCCGAAACGATCAAGGCGCTTTTTA 324605 30 100.0 36 .............................. GGCGACGTGCATGATGGCGAATTCTATGGCAAGACG 324539 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 19 30 100.0 36 ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Left flank : AGCTAGATCCTCGCATCGGCTTTTTGCACGAGCCAAACTACCGCGCGCTAAGCCTTCACCTCGATCTTGCGGAGATTTTTAAGCCAATCTTGGGCGATACGCTGATTTTTAATATGCTAAATAAAAAAGAGATCATCGCAAAGGACTTCCAAACGGACGCTGGTAGGATAAAATTTAGCAACGACGCCGTGCAAAAGATCGAGCTAAAGATGATCTCACGCCTTTCTGAGACGATCACGGTGGGCGGTAGAGAGCTAACGTGGAGGCAGGTGATCCGCCGCGAAGCAAATAAGCTTAAAAAGTGTATCTGCGAGGACGCGCCTTATGAAGGCTTTAGGTGGGAGTGAAATCGCATTTTAATAAAGCGTTTTTTAAGATTTTAGAATGCTTGAAATTTAGGGCTTGGCGTATTTGCACATGGCTAAATTTTAGTCAAATTTAAGGCGAAAAAATATAGACTTCTTGCACTAGAATACCTATAAAATAGGCTTTTTGGTGCT # Right flank : TCGCCGAGCATGATTGGCACCAACCGTAATCACTCTTTTGATAGTCGTTTTTCCGGAGCAGTTTCAAACTCCAACGGAGTAAATTCTAATGTTGGTAGGCTCTGTTTTCGCTTCGTGTTAATCGCATGTTTCAAACTCCAACGGAGTAAATTCTAATTTAAGTCTTTATCACAAAAACCAACATTCTTGACCAGTTTCAAACTCCAACGGAGTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.70,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA //