Array 1 4381905-4380899 **** Predicted by CRISPRDetect 2.4 *** >NZ_ML123117.1 Streptomyces sp. ADI98-10 scaffold001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 4381904 30 96.7 31 .............................G CGGCGGAAGAACACGACGTCGAGGAGGCGAA 4381843 30 96.7 31 .............................G GCTGGAGCGTGAACGCGCCGAGCGGGAGGAG 4381782 30 100.0 31 .............................. ATGCAGGCCCGACGCTTGCGAGCATGGGCAC 4381721 30 100.0 31 .............................. GCTCGCAGACCTCTCGCAGGGACGGCATGGT 4381660 30 93.3 31 ............................GG GAGGGATGGTTCGCTGGGCCGTTGTGATGAC 4381599 30 96.7 31 .............................G GATTCGATCGCTGATATGGCGAAACTGTCAC 4381538 30 100.0 31 .............................. GGCACGGCCCCGGGGTGTGATCCCGGGGCCG 4381477 30 96.7 31 .............................T CCCCCCACCTTGTGCCGGTCTCCTCCGCAAA 4381416 30 100.0 31 .............................. ACTACGTGTCCCTGGCACGTCTCCGTCTGGA 4381355 30 100.0 31 .............................. AGGCCCGTGGCGACCGCAAGCGGCTGGTCTG 4381294 30 96.7 31 .............................T CCTGCTCGGTGCCGGTCAGCTCGTCTCCGCC 4381233 30 96.7 31 .............................G AGAAGTACGCCCGGTGGGTGCGCGAGGCGAT 4381172 30 96.7 31 .............................A CGAACCACAGGCCCGTCGTGAACGAGACAGA 4381111 30 96.7 31 .............................A TCTCTCCTTGGCCATGTCCGCGAGGTGCCCG 4381050 30 96.7 31 .............................G AGTCGGACCACTGCTTGTACTCGTCCTTCAG 4380989 30 96.7 31 .............................A ATCTCGTATAATTTGCTCGGCTCCGGGGGCG 4380928 30 90.0 0 ..........................TGT. | ========== ====== ====== ====== ============================== =============================== ================== 17 30 97.1 31 CTGCTCCCCGCGCGTGCGGGGATGGTCCCC # Left flank : CCGTCGAACTGGAGGCTCGGGACGTCACGGCGGACGTGATGAGGGATGCCGAACCGCGCCAGGGGCACGGGGCCGGCCGCGGCCGGGGCGCAGCGTGACGGGATCTGTACAAAAATCGACACATCCCCAGCGTGACCTATCGGCTTCACTTCCCTGGGGACGTGTTCGACACGTACAAGCAGCTGCCCGGGCTGGCCCGGCGGGATCTCGCGCTCGCCCTGGTCGACGCCCAGGAAGACCCCCTCGTGAACTCCGAACCGTACGGACAGGACGACGGCATCATCCGCACCGTCGCCCAGGGACACGTCACCGCAGTGCTCCTCCTCGGCCACGACACGAGGACCATTACTGTCCTCACCATTGCCTATGCCGGAACCACCTGACCCGCGGCCAGTGCAGACATGGTGAAGGCAGAAGGTTGAGGAATGGACGATTTGTCGGAATCAGTGAAAGTGCTCGGGAATCGCACCCACCCCTTGTAAAGCTGCAGGTCAAGAAGT # Right flank : CACGGACAGCGGGCCGTCCGGGTGAGCGGACTTTTCAGCTCCTCGTGGGCGGACAGTTGATCTCCCTGTCCAGTGTGACTTTTCGTCACGCGATTGGCGGTGCCTCAGACGCCTTGGACTGGATCACGCCGATCCACGTTGAGCGCGTGGTCCTTCGCCGCCTTGTCCCAGTCGCAAGCGGTGCATCGTTCGAGGTAGTAGTCGACTTCTTCTACTTCCTCGAGCGCCTCGTACTCGGAGTACTCCCTGTAGTTATCGCGGTCGCGGACGCGGCCGCAGGGGGCATCTGCCGAGTGGTAGACGGTCTGCTTTGGCCCGGGCGTAATGCGGACCAGGCATGGCAGGTCGAGGCTGCCGTCCGCCAGTGCCGCCATTTCCTGATCGGCCTCGGCCAGATCGGCGGCCAGCTTCTCGCGCCTTCTCGTGTCCTCCGCGTAGTACTCGCTGAGGATCTTGAGCTTCCGCAGTCGGACCTTGTTGAACTCGGCGTCACCCATGAC # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.44, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGATGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCGTGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4386077-4384025 **** Predicted by CRISPRDetect 2.4 *** >NZ_ML123117.1 Streptomyces sp. ADI98-10 scaffold001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================================================================================================================================================================== ================== 4386076 29 100.0 32 ............................. AGGCCGCGGCTGCTCGTGAACAGCAGGCCCGG 4386015 29 100.0 32 ............................. CACTTCCTGATCGCGGGCGGTACCGGGTCCGG 4385954 29 100.0 32 ............................. GCACCGAAGCGTTTCACCCCTGACCTGCGTCT 4385893 29 100.0 32 ............................. GGGTACCGGTTCTCCTCCTGCTGGAAGTGAGC 4385832 29 100.0 32 ............................. GAGGACCAGGCCATGGGGCACCTGAAGGAGGC 4385771 29 100.0 32 ............................. CAGGTGGCGGGGGAGCTCCCGGAGCCACGTGT 4385710 29 100.0 32 ............................. TCATGCCCGGCTGGGAGGTGAACGGGGAAGGG 4385649 29 100.0 32 ............................. TCCTCGTCGGCCGTGACCTCGCCCTGCTGGAT 4385588 29 100.0 32 ............................. TGGCACATGATCTGTGCCGCCGAGTCCAGTTC 4385527 29 100.0 32 ............................. GCGCTGATCGTCTTCAAGGTCATGCCGTCCTC 4385466 29 100.0 32 ............................. CGCTGCCACCCCTCGAACACGTCGTCACCGAT 4385405 29 100.0 32 ............................. CGCATGGAGGCGGCATGAGCGGCGCGCACGTG 4385344 29 100.0 32 ............................. AACTCCTCGACCGCGCAGTGCACCTCGTCCTC 4385283 29 96.6 32 ...........G................. CACGGCCGTGTCGGCTCCGGGCTGCAGCGCGG 4385222 29 100.0 32 ............................. CGGGCCGCCGAGATCGAGGGCCCGGAAGGCGA 4385161 29 100.0 32 ............................. GACGGGCCCGCGCTCGCGGCCGGGCTCGCCCG 4385100 29 100.0 32 ............................. TCCCGGACGACAGTGCGCATCTCATGCAGCTC 4385039 29 96.6 32 ......................C...... GGCCGCGGCGGGGCCGTTCCAGCCCTGGTGGC 4384978 29 100.0 32 ............................. GCGACGCGACGGTTCGGAGTGCGTTGGTCCGA 4384917 29 100.0 32 ............................. CTGCTGCCGTTCGGTACGGAGTCGACGGAGAT 4384856 29 96.6 32 ........................C.... TGCCGCTACTGCCTGACCGTGACCTCCCAGGA 4384795 29 100.0 32 ............................. CAGGGCTGCGGCCGGGCGGCCCTCCGTCCCGG 4384734 29 100.0 32 ............................. GCCATGGCGAAGTCGCCGAAGGGCTTCTGCTC 4384673 29 96.6 32 ......................G...... AAGGACAGCGCCTTGGTCGCGATGGTCAACCG 4384612 29 100.0 32 ............................. ACCACCGCCTCCACCGGGGTTCTTCCCAAGCT 4384551 27 89.7 32 ...........G....--........... TGCACGCGGCCGGCGTCGCCGGTGCCGGACAG 4384492 29 93.1 31 ...........G.....A........... CCGAGGTCGACGCCGCTCTCGCGCTGGGCGG 4384432 29 89.7 32 .............GT..........C... TCGCGAAGGACGCCAAGGACCCCAAGCCGGCT 4384371 29 82.8 31 ...........G..T..A..A....C... GTCTGCAATCCCGGATGGTTGTACGGACCGA 4384311 29 82.8 180 .......A..TG.............A..A CGGCGGGGTCCGGAGCCGGAGAGCGCGGCCGTCTGCTCGCTTACGGGTCTCAAGTAGTAGCAATCTCGCTGATTGCGCACTGAAGATGAGCGGAAGTGAGCAGGATGCGCCTAATGGTGGGCAAGGTGGGCTTTTGCAACACGGAAGGCATAAAGCATCAGTTACATTTCTCACTACTCA 4384102 29 69.0 20 A..G....T...GAGC.A......A.... ACGGAGGGCATCGCAAGTGC Deletion [4384054] 4384053 29 69.0 0 G.......T..G.A...A...T.TT...G | ========== ====== ====== ====== ============================= ==================================================================================================================================================================================== ================== 32 29 95.7 36 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : GTCGCCTTCCCGATGTCATGCACCCCAGCCAGCCACACCACTAGCCGCCGGCCATCCTCCACCCCACCGGGCAACGGCCCCGCGATCACATCCCGAACCTGCTCAGGGAGCCACTCGTCCCACAACAGCCCCGCCACAGCGGCACTGTCCTCCATGTGCCGCCACAACGGCAGCCAACCCTCCGTATCCCGGTCGTGCTTCGCCCACACTCGCCGAACAGCACCCTGCAGCCGCCCCCCAAGGCCCGAACAGGCCCCACCCTCATCAGCCATGTCAGATGAATACAGGCAAACAACTGAACAACACGCCCTGATCAGAAAATCTGATGCTTTTCGATCGACAACATCACGTCAACCGACAACTCGCCGTACGATGCGCCGACGTAACCCGCGACCCAGCACAACAGGCAACAGAAAGATGGTGAAATGATCCATATGCCGGAATCGGTGAAAGTGTGTGAGATCTCGGCCCTCCCGCTGTAACGCTGCAGGTCAGGAAGT # Right flank : AAGCTCAGCCGTTTCTCGACAGTTCGACATCATCAGCAAGCATGCGTGGACGCGCCACAGGCAGGCATGATGCTGAGTAGCTCAGTCGCTGAGATGGACGGAAGCAGGACTTCATGACGAGTGCACCGGACTACAGCCAAGGCGTTGATGCCGAACGCGCGTTGAAGTTCGCTGTTCAGCGCATCCGTGGAGACCGTGTCCAAATCATCGAGGGGATCATCGAGCCAGTGTCACCGACCTGGGATCACGAGCGCGCTGCGAAGCTCGTCCGTCGGCAGATCGAAGATCGGGTAGATGATCTTAAGTGTGTCGAAGGCTCTGGAAACTTGGATCTCCCGGGGTCGTCTAACTGGTACGTTCCAGACATCGCCGTGGTCCCCGAGGACCTCGCAAAAGGCGGAGGCGCACTACTCCCGGACCAGACCCTGCTGATCGTCGAAGTGACTTCGGAGTCAAACGCCGAGACCGATCGAGTAGTGAAACGCCGCCGGTACGCCGAG # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:-0.46, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [36-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 4396119-4397072 **** Predicted by CRISPRDetect 2.4 *** >NZ_ML123117.1 Streptomyces sp. ADI98-10 scaffold001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 4396119 29 100.0 32 ............................. CCCGCCGCGATGACCGACGCCGACATCGCCCG 4396180 29 100.0 32 ............................. GATGGGCCCATGGGAGAGCGCGACCGCAGCTC 4396241 29 100.0 32 ............................. CCGGGTGTATGGGTCATGTCGCAGCCGGGCGC 4396302 29 100.0 42 ............................. GTGAGGCACCGTGAGGCAACGTGAGGCACCGTGAGGCAACAG 4396373 29 100.0 32 ............................. AGCCGATCCAGGCGGTCCGCAGCCCCGGGGGA 4396434 29 100.0 32 ............................. TTCGCCTGGGCGTCCCGCGAGGCGGAGATGAC 4396495 29 100.0 32 ............................. GTGGGCGGGGCTGCTGGGTACGAAGTCCCGGG 4396556 29 100.0 32 ............................. ACTGATCCGGGCGGGGGTTGGTGGTGCCGGTG 4396617 29 100.0 32 ............................. AACCGGCCCTACCTCACCATCCAGGACGAAAT 4396678 29 100.0 32 ............................. GACTCCCACGCCCAGCCGCAACCGCTCCCGGG 4396739 29 100.0 32 ............................. ATCTGCAACCTGACCGCGACGTCCGCGGGCGT 4396800 29 100.0 32 ............................. GGTGTGGTGACCTGCCAGAGCTGTGTCCGGTA 4396861 29 100.0 32 ............................. GAGGCGGGCGGCGTCCAGCCGAGGACCTGCTC 4396922 29 100.0 32 ............................. CGCGTACTGGAGGTCGTTGGAGTACTGGCCCG 4396983 29 100.0 32 ............................. GCGGACTCTTTGGGCGGTGTCTTCGGGAAGGG 4397044 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ========================================== ================== 16 29 100.0 33 CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : TCCAGAGCGACAGAGGCCTGAACGTCGCGTCCGGAGTGAATTACGGAACGGACGAGCAAGAGGCAGCGAGCTGGTGACCGTGATCGTCCTCACCAACTGCCCTCCGGGCCTGCGAGGCTTCCTCACCCGGTGGCTCCTGGAGATCTCCGCCGGCGTGTTCATCGGCAATCCCTCGTCCCGCATCCGAGACGTGCTGTGGGACGAAGTCCAGCAGTACGCCGGTCAAGGCCGTGCGCTTCTCGCTCACACGACCAACAACGAGCAGGGCTTCACCTTCCGTACCCACGACCACGCCTGGCACCCCACCGACCACGAAGGCCTCACCCTGATCCAACGACCCAACACCAGCACTGACTCAACGAGCAGCGCTACGAAGCCAGGGTGGAGCGCAGCGTCCAAGCGTCGCCGCTTCGGAAAGAGATGAAACACCGTATATGCCGGAATCAATGAAAGTGCTCGAGAACTTGCTGTGTGCGTGGTAAACCTGCAGGTCATCGAGT # Right flank : CGGAAGGCCGAACAGGGGGCGCTGAGAGGTTGCTGCTCCCCGCGCCCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //