Array 1 1058595-1061507 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP075945.1 Clostridium perfringens strain 955/85 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1058595 30 100.0 35 .............................. AACATATGTAACTAATATGGATTTATTCTTAGCAA 1058660 30 100.0 35 .............................. CCTTCTATACAAACTTTAATTGCCCTGGTATGTTA 1058725 30 100.0 36 .............................. ATCCTTTGCTAAACATTTTTAAGAATTTAAAATAAG 1058791 30 100.0 35 .............................. TTCCCTTTAACTGTTGGTTTTTTATTTGTCATAAT 1058856 30 100.0 36 .............................. TGCTTTTATGAATCACGTTGCTAAAGAATTAAAGCC 1058922 30 100.0 34 .............................. GCATACACTAGGTATGTTGTTTGAGGATAAAATT 1058986 30 100.0 34 .............................. TTACCAGCTTCCAACCAATCACTAACATCTTCTT 1059050 30 100.0 34 .............................. AAAGGCGGATGATGGAACTTTTAGTATGATTGAT 1059114 30 100.0 37 .............................. AATTTATCTGTTATTTCTTCAAATTTCATAAAATCAC 1059181 30 100.0 35 .............................. GCAACATCTTGATTACAATAAACATTTAAGCCATG 1059246 30 100.0 36 .............................. AGATAATACTTTATCAGATTTCTACAAATTATTAAA 1059312 30 100.0 36 .............................. TGAAATTGCATATATTTATTTTATTTTAGCAATAAC 1059378 30 100.0 35 .............................. AGAGTATGTAATAAAAGCTAAAGATGTAGGTGTAG 1059443 30 100.0 36 .............................. ATCAGATATAGATAAATCTATAACTACAGTAGATGA 1059509 30 100.0 36 .............................. GGGACATTACCAGAGTTTTTACGCACCGTTAATAAA 1059575 30 100.0 34 .............................. TTAAGTTTTTTAATTGAACGTTCTAGCAACATTT 1059639 30 100.0 37 .............................. GGAAGAAGTAGAAGAGATCAAACAGCAATTACAAACA 1059706 30 100.0 37 .............................. TAAACATCATTTACAGTATCACTAACTTTATAAGAAA 1059773 30 100.0 36 .............................. TTTTGTGCGCTTTTGTGCTACAATATAAACATAAAG 1059839 30 100.0 36 .............................. GTTGCCAGCTAGATTTGACTATGTAGATCCACAGTA 1059905 30 100.0 35 .............................. AGATATTAGCTATAATCCTAAAGATATGCAATTAT 1059970 30 100.0 36 .............................. TATTTGAAATTATTTTCTTTCATTAATTTCCTAATT 1060036 30 100.0 35 .............................. ACATGACGCATCTCATAAAAATTAGGTTGATATTT 1060101 30 100.0 36 .............................. TCTCTATCTGTTACATTAATAATGTAGTTATCTAAA 1060167 30 100.0 36 .............................. AACTTTATCAAGTGAATTAGTGGAAGATGCAGAAGT 1060233 30 100.0 36 .............................. TATGAAGATCCTGAATACACACTAGAATAGACTCTA 1060299 30 100.0 36 .............................. TATCATAATGTACATCTTTTTTCAATTTAGTAAAAT 1060365 30 100.0 36 .............................. GATTCAGCTTTTCTTAATTCTTCTTCCCAATATTCT 1060431 30 100.0 35 .............................. ATGACAAATATAAAAAAGAAATTGCACTAAAGAAT 1060496 30 100.0 34 .............................. GATATTATTTTAAATTTTAGTTCTATGGATTTTG 1060560 30 100.0 36 .............................. CCTTCTAAAGATAGAGATTGGAAAAAACAAAGAGCA 1060626 30 100.0 36 .............................. ACGGAACTGAAAACTATATATATTCTATAGAGGACA 1060692 30 100.0 36 .............................. ATAAAATAACTTATAAAAACCCATTATATTATCTTC 1060758 30 100.0 36 .............................. GAAAAAGTTACATAGATGATACAAAAAGAGTTATAA 1060824 30 100.0 36 .............................. AAAGAAATAACAACAGAAGAATTAAAATGCTATATT 1060890 30 100.0 35 .............................. TTGCTTTTGTCATTTAAATATCTATATGGAACTCT 1060955 30 100.0 35 .............................. TTACTCCTTATCCCGACTCCTGTACCAGTTATTCC 1061020 30 100.0 36 .............................. AAGTGCAACAAATCAAGGTGATGTGCAGAATATGCC 1061086 30 100.0 36 .............................. CCAAATAAGAAGCATGAGTGATATAGTTATAGACTT 1061152 30 100.0 34 .............................. AGTGCAGATACTTTTAAAAAACCTTCTTATATGC 1061216 30 100.0 35 .............................. CAGGATTGAAAAAGGGTGAAGCTAAATAAACTTTT 1061281 30 100.0 36 .............................. TTATTGGTCGGTTTTTCGGTCGGTGCAAGAGTATAG 1061347 30 100.0 36 .............................. TATCGCAGCCACCGTTTACACCAGCTACACTTCCAT 1061413 30 100.0 35 .............................. TCTTTTATCTTTGCTATATTCGCTATAGTTCCCTT 1061478 30 96.7 0 ......A....................... | ========== ====== ====== ====== ============================== ===================================== ================== 45 30 99.9 36 ATTGAACTTTAACATGGTATGTATTTAAAT # Left flank : CTTTTTCACAACAATATACATCCTTTAAAATAAAAAAGCCAGAGAAATATTATAAAAATATCTCCCAGGCTTTTATCCTTCCGTGTTCACAGTAAGTTTATCTGTGCGTTTTCTCTTGGACCAGACTAACTAAAAAGCTACGGAACCCTAGAAAACTTTATATTATTAAGTTTTAATTAACAAATTCAAAATTATAAGTTAATTTTAGCATAGTATAAGGGCTAAATCAATTCACTGATAAAAATTTGAAGTTTACTGAATATGTAAATTTTAGTGTTTAATTAATGCATTCTTAGAAACATCTATAAATACACAAATAAAATTTTACCAGCCTAAAATCATATAAAATCACCTTTCAGACCTTGAAATAACTAGATTACAAGTTGATTTTATATTGATGCTTTAAATTAAAATGAAACACTGGTAAAATAATAAGAGAAGTGTTGAAATAACTAACTTAAAGATAAATATCAAGAAAAAGAAATGGCTATTTTACAAGC # Right flank : TAAATAACTTCGCAAAATATATATTTTATGAATAAAATTGATATATATATTTTTATATAAGGACTTTAAATATTAAATTATTGGAATAGGTATATTGCTATGTTTCTAAGTTGATTAAAATATTTATATTATTAACTAATATTTTATTAAATAATTAATATTACCAGAATATATAAATTTATAAAATAATTACTTAATTTATAAAATTTACAGATAAAAATTAGAATTATATCTATAATAAGTAATATTTTTATGAAATAAAAAGAAAAAATAGCCTAAGAAAATAAAATTAATAAAAGATAAATTTTGTAGAAATAGTTTTTATTGGTATAATTAAAATATCAAATGTATTTAATTTATATAATAAATTTTGTAATAACTCGTGGAGTATTTAAAAAATGTATTTAATGCATATAATCTTTTAACCATAACATTAGATGTACTAAACAAAAGATAAATTAAATTATTTGAGTTTTCAATTAATTATTTAAAATCAATTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACTTTAACATGGTATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [75.0-88.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 1071655-1073460 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP075945.1 Clostridium perfringens strain 955/85 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1071655 30 100.0 37 .............................. CGATATCAACTCCTTATTTCTTTTACAAGCTTATAAA 1071722 30 100.0 36 .............................. CCTGGAAGGTAAAGGAGTTGCACCTTTATTATAAAA 1071788 30 100.0 36 .............................. AACTGGTAATCTTACAACTACACCAGTTTCTTCTAT 1071854 30 100.0 36 .............................. AAAGTAAACTCTTTCTCAACTGCTTTATTTAATCCA 1071920 30 100.0 36 .............................. TCCCATGCAAAAACGCATGGTTTATCATAAGTTTCC 1071986 30 100.0 36 .............................. GTTTATAAAGCAAACAATTAATAAATAGGGAGGTTA 1072052 30 100.0 36 .............................. TAAAATCTTACACGAGTATAACGCCCCATAATCGTC 1072118 30 100.0 36 .............................. TTTATAGTTTTGTATTTATTTCTATCTTATATTTAA 1072184 30 100.0 35 .............................. CAGTATAGCTCTGTTTCTTCGCTTTCTTCATGTGA 1072249 30 100.0 36 .............................. CGAACACGCTAGACAGCCATTTAACGTAAATACTAG 1072315 30 100.0 36 .............................. CAGAGGGTGGACGATAATTATAATAGGGTGAAAATA 1072381 30 100.0 36 .............................. TTATACAATTGTTAGTATAAAATTAGATAGATAGGT 1072447 30 100.0 36 .............................. GAAACAGCAGATTTGAAAAGTATAAGTGATTATGCA 1072513 30 100.0 36 .............................. ACACTTGCCCACATGCTACCATCTGTTAACCAATAA 1072579 30 100.0 36 .............................. AATAGTGAAACTTTAAATGATTACATATGCTTAGAA 1072645 30 100.0 36 .............................. CTATAAAACAAAAAATAAAAAACCTTTCTTAGCTTC 1072711 30 100.0 36 .............................. TGGTAAGAGAATTTATTATACTGCACAGAAGTACAA 1072777 30 100.0 36 .............................. AAGATATTACAAATGATCTCTATAGTTTAGATGAAG 1072843 30 100.0 36 .............................. TAGTACCCATTATACCTATTCCGATAGGTAAAAGTG 1072909 30 100.0 35 .............................. GAGAAGCCCAGAATACTAATCCCATTTCTACCTCC 1072974 30 100.0 36 .............................. TATATTTAAAAATGATAAGAAAGAAGGAATGTAAAA 1073040 30 100.0 34 .............................. AAAATTGTAACTGGAATACTATTGCCTGCTTGTT 1073104 30 100.0 35 .............................. ACTTTAGAAGGCTCTAACTCGGGATTTTTTAATGG 1073169 30 100.0 36 .............................. ATGGTTCGGGAGTGTGTACTAATCCAAGTGCAGGAA 1073235 30 100.0 35 .............................. TCTACCTCTTTTGAGATAGTATCTAATTTAGTTGC 1073300 30 100.0 35 .............................. TTGGTATACCATTGGTATCCATTTGGTATCCATTT 1073365 30 100.0 36 .............................. TGATACTTTTGCTTTTGTTTGTTTTTCTTTTGTTTC 1073431 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 28 30 100.0 36 ATTGAACCTTAACATGATATGTATTTAAAT # Left flank : TGTAAGATATGAAAAGTAAAATGAATTATAATTATGCTTTTGTATTTTATGATGTAAATGAAAAGAGGGTAAATAGGGTGTTTAAAGTTTGTAAGAAGTATTTATCTCATTTTCAAAAATCAGTTTTTAGGGGAGAAATAACCCCTGCTAATCTTATAAACTTAAGAAAGGATTTAAATAAAGTAATAGAAAAAGATGAAGACTTCATATGTATTGTTAAATTATTAAACGGAAATGTATTTGGAGAAGAAGTGCTAGGAATTCAAGAAGTAATTAACGGAGAAACACTGATACTTTAATAATTAATTTAAAATAACATATAATTTTACCAGTGATTTAAGTGGAAAAAGTTTGTGAAATCCTTGAAATAACTAAGTTTTAGGTTGATTTTCGATACCCTCTTTAATTCTTAATAAAACACTGGTAAAATCATAGTATAAGTATTGAAATAACTAGATTAAGATATATTTATTAAATTTAAAAATGGCTATTTTAAAAGT # Right flank : TCATATGTAATTTCTTTAGGGAGTGAAGAGACCAGTGTTCGTCGTTTAAATTTAGCACAAGCTTTTAATCCTATTGGTTCATTAGCTGGTATTATAATGGCTAAATATATAATACTAGGGAATTTACATCCAGCAACTTATGAAGAGAGAGTTGCTATGGGATCAGAGGCCTTAAGTAAAATATAAAACAATCAATTAATATGGGTATGTGTACCATATGTTAGTTTAGTAGTTATAGCTATAATAATTTGGTGCTTCTTTAAGAAAAGTAAAGGTTCAGAAAAAGATGATTCAGGAGAACTTAATATAATTGAATCAATAAAGAAATTAATAAAAATTCCACGTTATGCTTTTGGAGTAATCACACAATTTTTCTATGTTGGAGTTCAAATAGCTGTTTGGACTTGGACTATAAAATATGTAATGGTTACTGTGGGTATAGATGAAGCATCTGCTGCTAAATATTATCTTATAGCTATGTTTGGATTTATTGCATGTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACCTTAACATGATATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [85.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA //