Array 1 39057-38845 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKGR01000003.1 Xenorhabdus thuongxuanensis strain 30TX1 Xentx_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 39056 29 100.0 32 ............................. CCCATTTACACACCCAGCCGGACGATTTTATG 38995 29 100.0 32 ............................. TGAACAACCTGGCTATTATGCAGCAAGGGTTA 38934 29 100.0 32 ............................. AGGGGTTTAAATCCGCAGCAATGGAACGCGGC 38873 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 4 29 99.2 32 GTGTTCCCCGTGAGTACGGGGATAAACCG # Left flank : CTGCCTTCGGTATTTCAGGCAATTGGAGATTGTTCGATGAAACAGTGGGAATTTTTAACTCTAGATATGCCGCAATGGCTGATTGGTATTTTTGCCTCTTATCTGTTGGTAAGTATATTGGTACTTGTGAGTCAGTTTTTTCGGACTCAGGGTAGATTTTAAGAGTAAGCAATTGCCCCAAGGGGTCCGTTAAAGACTCCTTTGATAGTTTTCTCATATTCAATTCTTTCTCACAAGAGTAAAAAATGCAGACAGAACCATGCCTAATCTCCCACTAACTAATTCAGATGCATAACTGTTACCACAAACAATAGCAATCATTGTGATTTAAATCACATAATTTAATGAGTGAAAATTAAGAATATAGATGAAACGCGATCTGTATTGCAGATGATAAATCAGAAAAAAATGAAAGGATGAATTTTACTGATTTACAGGCTGAAAAAATGGTAGAATTTTTACGTCAGAAAAATATTTTCTAAAACAATTAGATAAAATTA # Right flank : GATATTCCTGTTTAGTATATTTGTTTTAAATAATCATATTATAAACTGATACCTGGTTTGAATTTCGGGAAAGGTATCTATTGACTGACTAATAACCCATTATATATAGCCACTCACTACTTACTATCCCTCCTTATTTTTCTAAATGCCACCTTCGAAATTTCTATTGACTTTTCGCTGTAATATTTTCTTTCAGTAATATGTGATTCACGGCATATTTTGCCTGCCATGCTTTAGGGTTGATTAAGTAATGTTGCCGGAAACGTTTAGAAAAATGACTTGGGCTGGAATAACCCACTGCGGCAGCAACTTCAATGACACTCATCCCTTTCTTCAATAAATCTTCCGCTGTGGTCATACGAACGTTTTCCAGATATTGATGGAAAGTACGGAAAACAACCGCACGGAATCCCTCTTTTAATTTCCGCTCATTCAAACCCACCGCTCTTGATAACGATTTTATTGTCCAAGGGTAATGATAATCGTTATTAATTATTTTT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTGAGTACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTGAGTACGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 20250-21989 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKGR01000011.1 Xenorhabdus thuongxuanensis strain 30TX1 Xentx_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 20250 29 100.0 32 ............................. TGAATGGGCTAATTATTCTCAGTAGTTCAGAG 20311 29 100.0 32 ............................. TCCATTTTCCTTATCTAATCACAAATACATTA 20372 29 100.0 33 ............................. GAGATTGCATGTACACTCCATGGAACCCCAATC 20434 29 100.0 32 ............................. ATAGAGCTGACATTGTTTCAGGTTTTCCTGTA 20495 29 100.0 32 ............................. ATTTTTGCATCACGTAAGTATGCATTCTTCTG 20556 29 100.0 32 ............................. GTAGGATTGATTGTTGACGAGTTCTTTGGTGC 20617 29 100.0 32 ............................. TTCAATAAAAATGTGTATTTTGTCCATCTTCA 20678 29 100.0 32 ............................. TGTCGAACTGCTGAACGGTGTCTTCACTGGCC 20739 29 100.0 32 ............................. CCAGTTTTTTTGCTATAGATTTTGGTATTTCA 20800 29 100.0 32 ............................. CCAGATAAGCAGCCGCGTTTATCCCATACTCT 20861 29 100.0 32 ............................. AACATTTCGGAATGGGAGACCAAGTTTAACGG 20922 29 100.0 32 ............................. CTCTGGCAATCACGCATTGAGAACAACAAAGA 20983 29 100.0 32 ............................. TTGAATAGCATGGGAGATGCAACCAATGACCA 21044 29 100.0 33 ............................. CAGCGTATTGAGAAGCACAGTCACGAAATTGGC 21106 29 100.0 32 ............................. AAACTTGCAATCGACATAAAAACTATAAACAG 21167 29 100.0 32 ............................. TATTTGAAGATACTCTATTTTTTAATCCTTTG 21228 29 100.0 32 ............................. CCCATAGGTTGGGACAAGATCTTACATCTGGG 21289 29 100.0 32 ............................. CAAAAAAATTAATACGGAACAAGAGCGTTTAA 21350 29 96.6 32 ............................T CTGTCTGTACCATAAGTACAATAATAATCCAC 21411 29 96.6 32 ............................T CTGTCTGTACCATAAGTACAATAATAATCCAC 21472 29 100.0 33 ............................. TAGTTTTCTAGTGCGCTATAGGCTTCTTTGTGC 21534 29 100.0 32 ............................. CCTATCATCAAGATTATGGTGATCCAGGCGGG 21595 29 100.0 32 ............................. GTCTCATGTGGCTACAACGCCGAATATCGTCA 21656 29 100.0 32 ............................. CCTCAGCAGACGGCAAAGAGGCGGCGATCCTG 21717 29 100.0 32 ............................. CCCATGAATGGAAGTTTTAATGTTAGAATTGG 21778 29 100.0 32 ............................. TTAGTTGGGGTTTCGCACGGTGCTATTTCGCA 21839 29 100.0 32 ............................. ATCACCGCCTCCGATGCCTGAGCTGCCCAAAA 21900 29 96.6 32 ..........................T.. TCAGGTTCGAATCCACCGAGATCAACCCCATT 21961 29 69.0 0 ...C.....A..CA.....AA.....TAA | ========== ====== ====== ====== ============================= ================================= ================== 29 29 98.6 32 CTGTTCCCCGTGAGTACGGGGATAAACCG # Left flank : AGACGGAGAACAGCGCCGTGATCGCAACGGTAAGATCAAAAGTTGCCGAGTACCTCTCATTCATGAGGAGGAACAGTTGCAATGGTTATCACGCAAATTAGCAGGAGCGGCGCTGTTATCGACGGCTTGGGTAACACCGGAATCCTCCATCTATTTTTACAAAGATGATATTAGGGGGAAAATTCAGCCAGTATGCTTTGAAGGGCAAATCATCGTACAGGAAAATGAAGATTTTATTGCTCTTTTAAATCAAGGAATTGGACCGGCTAAAGCTATGGGTTGTGGTTTACTCTCTTTGTCTTTGAGTTAGAAATGAGCCTCGTAGCATAAATTTTTCGTATAGGGAATTTCGGTAGATCGGAATGGTTTAAGTTTTATCTTTTTTAACGTTTTGAAAAATAAATATTTTTATATTTGATAAAATGCGATTTTTAAGTAAAAAACGTGGTAGAATTTTTTCTTTCAAAGAAATTTTTTAAAAACAAATAGATATGATTAGT # Right flank : ATAGTGTTCATCTCTATTTAATCTTTGCAACTTATTGATAATCTGTATCGCTATAAAAATATCGTTGAGTCGTTGAGGTATAAGGGAATAGCGAGTTTCCAGCATGATGGAAGGGATATGTTAGATCCTATTGAAAATAAGACAGATTAAAAATGGTTGAAAGCGTCCTATAGTAAACTATTTCCATTCGGTAAAATTCGGAGCAAAATAGGGTACATTGTTATCATTCATAAAATAGTAATAAAAAATGACATATTGTCATTGTTTCAGCTTTCAATTTGGGCTTACTGCGTTTATGATGCGCGCTTCGTATTTTCAACCGGCGCCACTGGCTTTGAGCTTTAGCGGAGAAATGATGCCTCCTGCTAGCTAACACAGTCTTTTCCCGTGGCGGTTCTATCTGCATTATTCAAAGGGATAGATGATAGCATAAATGACTGAGAACACCTCTCTGACACCACTCGTTGAATTGAAAGCCTTGAGTAAGGGCTTCGACGGTA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGTGAGTACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGTGAGTACGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 56386-54948 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKGR01000011.1 Xenorhabdus thuongxuanensis strain 30TX1 Xentx_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 56385 29 100.0 32 ............................. TTACATGGATGATATTTACACAGGGAGGTTAT 56324 29 100.0 32 ............................. GAAATAAAATGGCACTCACCGACAAACAGGAA 56263 29 100.0 33 ............................. CCTCAGAATTAGCCGCGACAAGATTGCTTATGC 56201 29 100.0 33 ............................. CTCAGGGCTGGTGGGCGTTACGAACGCGGTTCC 56139 29 100.0 32 ............................. TCGGCATGAACAAGAACATTTCGGAATGGGAG 56078 29 100.0 32 ............................. AGCGGGATAGTCTAAACAGAATGTTCACGACG 56017 29 100.0 32 ............................. TTAAAAGAGTGCATGAAAGATGTATCATTACG 55956 29 96.6 32 ............................A TTTGATAAAACCTCAGCGACCATGAGCCAGTC 55895 29 100.0 32 ............................. ATCATACTGGAAAGCGAGCCAGTGGGGAACGA 55834 29 100.0 32 ............................. GCACTTCTGCAACATTCCAGCGCTGAAAAAAT 55773 29 100.0 32 ............................. TTCAGCGCTAAATCAGTGCTGGCTTATTATGT 55712 29 96.6 33 ............................T CCTGTCCGGGGAATAAAATATCATTCCCCATAC 55650 29 100.0 32 ............................. GGGGATCTTTTCTTTCTTGTCTTTTGTAATAT 55589 29 100.0 32 ............................. GGAACGTTACCCAGACAGCTATCAAAATAATC 55528 29 100.0 33 ............................. TAATCTTTCATCGCATTAAAACTACCTTTCAGA 55466 29 96.6 32 ............................T TCCTTTTATGCGGCGTCTGGGATTTCAAGCGC 55405 29 100.0 32 ............................. ATCTTGATATTGCCCTTGAGGTAGGGATAGTC 55344 29 100.0 32 ............................. CGTCCTATGCCATCCGACAGCCGCGACACAGG 55283 29 100.0 32 ............................. CACCGAGGAAATCGGGCAAGGGGTTTGCCTTG 55222 29 100.0 32 ............................. GCTTGCTCAAAAATCGAATCCTTCTCTAGTTC 55161 29 100.0 32 ............................. AATAATATCCTCTACAAATGCTCAATTCATAT 55100 29 100.0 32 ............................. GCAGCTTTAATTATAGTTGTATTGTTTTGCCC 55039 29 100.0 33 ............................. TTATTATTTTCGTTTCTATCTGAGTATCAATCT 54977 29 79.3 0 A..........A.A............TAT | G [54953] ========== ====== ====== ====== ============================= ================================= ================== 24 29 98.7 32 GTGTTCCCCGTGAGTACGGGGATAAACCG # Left flank : TTAACATATTTATACATCATTACAACACGCTTTCTAGTGAAAAATGCTAATACACTCGCATCTCGTTTATAAGCAATTGCTAAAATTGTGATGACTTATACGCTCTTGAATGAATATTCCATCAAGCTTAAGGCATAACTCAATGAATCATACTACTTTGAAAACCATATCCAGCTCCCGCTTTTTAGTTTCCGACTGCATATGCATATACTACAACCAACATACTGGTAGATATCCCCACTGTTCAATGTGACTGAATAATTTTAATGGTTTTATTCTCTTTGTTGTTAAGTTAAGGCCAACTGTTTTTTTTATTATTGCTGCGATGGGAATCTCATTAATTGATAAATAAGAGTTAAAAATACGAATTAAAGGAGATCTGCATCACAGATGGTAAATCAGAAGAATGAAAGGGAAAATTTGACTGATTTTATAGGCTAAAAAATGGTAGGATTTTTCTGCCCTAAAAAGATTTTATAAAACAGATGGGTAGAATTAGA # Right flank : CGATTCAGATATCTAATTCTATACACCAACATACTTGAATAAATAATAATCTTCCCTAATTCTTTTAAGTTATTTTTTTCTTTTTTGTCTGAAATTGAGAAAAAATTTGGCTTTCTGTAAATATCAACTATACTTTTCAAGATATCACACATACAAAAACACTCATGATAGATAAACTATGAAACGTTATTCACCTGAACAAAATTTAGCTATCCAAGAAAAAATGCCACCACCTCACAACATCAGTGTTTCTTTCCTGGATAAGATAAAGGAAATATTTAAAAGTACATTGTATAATTGGTGCAAAAAGCACTGCTAGTTTCAAACCCAGTTAACTTTTGAAATTCAACTTCAATAAGAAATTAGATACATGAAAAGAAAAACAACCCATAAAAATAAAATATTATTAGATAAAACCACTCAGAAATTGTTACAAGTCACTATAAATAGAACCATCAAAATTTAAATCATTATGATGCTATAGGACTGTTCGCATTATT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTGAGTACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTGAGTACGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //