Array 1 30832-35743 **** Predicted by CRISPRDetect 2.4 *** >NZ_VXKJ01000048.1 Corynebacterium phocae strain CCUG 38205T contig_0000048, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 30832 29 100.0 32 ............................. CTTGTTGAGTACGCGGGTCGGCTGTGCTACCG 30893 29 100.0 32 ............................. CATGGTGCAATCAAAATCATCAGAAAGTTCCG 30954 29 100.0 32 ............................. TACTGGTTTATGTTCCTGGCCTGCCAGAATAG 31015 29 100.0 32 ............................. GCTGGCGCAGCTGCGTGACGTGGCCGCGCTCT 31076 29 100.0 32 ............................. CCGTATCTTGACGGATACTTTCACTGTTCAGT 31137 29 100.0 32 ............................. AAAATGCTTAACTCCGGCGAACTCGCCGGGTT 31198 29 100.0 33 ............................. GTTGTCGAACACTGACGCGTAAGCCACGATTTC 31260 29 100.0 32 ............................. CAGCAAAACCAGCAGGGCGTGTTTTATCGTTC 31321 29 96.6 32 ............................G TCATCAAGGTTTCCGAGGTTCACTGCCATTTT 31382 29 100.0 32 ............................. CCCAGGTGTCTGCCAGTAGCGCTAGATACATC 31443 29 100.0 32 ............................. TCCAGTGACGCCCTGAACCTGAAGAAGGTTCT 31504 29 100.0 32 ............................. TAGGCCAAAAGGCTTTCTTTCCTAATCCATCT 31565 29 100.0 32 ............................. TCCGCGCTGGTGTTCGCCCCGGCGGTGTGGTG 31626 29 100.0 32 ............................. GCGCTTGCCAAGTGGGTGCGCTGGGGCCGTAG 31687 29 96.6 32 ............................T GACCTTTACGGTTAGAACCCTCTACTTGCGTC 31748 29 100.0 32 ............................. CCCAGCAGCAGGTGGCTCACCCAACCCCCAGG 31809 29 100.0 32 ............................. TCTCGGACGCCCGCGACCGCGCCCGCGCCAAG 31870 29 100.0 33 ............................. TCATGCAGGCGGTCCTCTAGGTCCTGCCAGCTC 31932 29 100.0 32 ............................. CCATCAGGAACACCTACTCATTGAGGGACGGT 31993 29 100.0 32 ............................. CAGTCATCGAACTGCGCTGCGCCCGACAGAGT 32054 29 100.0 32 ............................. CTCCCGAAAGCCCCCGACCATCAGCCGCTGGG 32115 29 100.0 32 ............................. ACCATGGACTTCGCGTTCGAGCGCAACTCCGT 32176 29 100.0 32 ............................. AGTCAGTCCAACCAGTGGGAAGACGGAGAAGG 32237 29 100.0 32 ............................. CCCACGGCCGGCTCGCCATCGAACCGAGGATC 32298 29 96.6 32 ............................T GATTAACGCGGCTGGCACTGTTAGTGTCCAGG 32359 29 100.0 32 ............................. TTGTAGAGCGTATTCCTGGTCACTCCCAAGTA 32420 29 100.0 32 ............................. AGCTTGAATTATCATAGAAATCTATAGAAATC 32481 29 96.6 32 ............................T GGTGTCAAGCATTGGCTGGATACCAAAAGTAA 32542 29 100.0 32 ............................. CAGGCCACCACCTACTGCGCCTCTATAAAGGC 32603 29 100.0 32 ............................. GGGTTGTAGCGCACGTATGGTTTCACCGCGCC 32664 29 100.0 32 ............................. AATCAGTACTTTGCTGGTGGGCCGTTCCAGGG 32725 29 96.6 32 ............................T GGTGTCAAGCATTGGCTGGATACCAAAAGTAA 32786 29 100.0 32 ............................. ATCGTCCATGGATAGACGGGCTGCAATGGTGT 32847 29 100.0 32 ............................. TCCTGCGAATTCTCCACAGTGTCAGTCAAGGC 32908 29 100.0 32 ............................. TCCGCGATGAACTCCGGATCGGAGTCCACCAG 32969 29 100.0 32 ............................. AGAAAGGCCCTAAAATGGTCACTCTCATCAAG 33030 29 96.6 32 ............................T TGCGCTGGTTCACCCGCACGCGATCCCAGTTG 33091 29 100.0 32 ............................. ATCACTTCGTCATCACCGTTCTGGTAGTCGAT 33152 29 100.0 32 ............................. TTGCTATCCATAGTCCGATAAGCAAAAGACAT 33213 29 100.0 32 ............................. TCTTGCAGCTTGCTGGCACGCTCCTCGAACTT 33274 29 96.6 32 ............................T CACCTCACATCACGCACAGCAACCCAGGTGAC 33335 29 100.0 32 ............................. AATGAGGGTCACAAATCCAAGTGAGGCTTTAT 33396 29 100.0 32 ............................. TCATCACGCGCCTCGGGGCTGTTGAGAATGTA 33457 29 96.6 32 ............................A CGACCTGGTGTGGGAGACGTGTGCCTGTAGTC 33518 29 100.0 32 ............................. ATTAGGAAGTGGAAACGCCGTCACGCTGCTGC 33579 29 96.6 32 .......T..................... GTGTTGTGGGTAGGAATAAAGCCATACCCAGA 33640 29 100.0 32 ............................. AACGGGTGTGTGAGCTGACGGCGAATGTTCGG 33701 29 100.0 32 ............................. AAGGCTGACGCCCTTGATACCCAGGAACAAGA 33762 29 100.0 32 ............................. GAGGTTCGCTGAGGAGATGAAAGATGAGATCC 33823 29 100.0 32 ............................. TCCATTGGGTCGATCTCAGTTAAGCGTAGCAG 33884 29 100.0 32 ............................. CGGCTGGATACTCTGGCCTGGAGCGCTGCGGA 33945 29 100.0 32 ............................. TGGCTGAACAAGAAAAATGGGACGAGCTGGCT 34006 29 100.0 32 ............................. CTTTTCTCGTCTCTACCGCCAATCTGTTATGA 34067 29 100.0 32 ............................. TATGGAGAGTTGGCTGAGTGGTCGAAAGCACT 34128 29 100.0 32 ............................. TCGACCAGAAGAAGGACCAATCATGACCACTA 34189 29 100.0 32 ............................. ACACCCCCTGGTGCGCCCCCGGGGACTCGAAC 34250 29 96.6 32 ............................T CGTGAACGCTACTACCACCAGGTGGCGCGTCA 34311 29 100.0 32 ............................. TTCACCTCCGTCAGCAGCTTTGGCACCAACCA 34372 29 100.0 32 ............................. CTCATTGGCCTTATCGTGACCGCCCTTGCAGC 34433 29 100.0 32 ............................. CGGGGCCCTGCTCGTAGAAATGGCGGCGCACG 34494 29 100.0 32 ............................. ACTCTCACCACTCCGGGGTTTTACCCGGTGCT 34555 29 100.0 32 ............................. TGGGGCTCAATGCTATCCAGTCGTTGCAGCAG 34616 29 100.0 32 ............................. TCCCGCGATGGCGGTGGTGGCCAGCAGCAGTC 34677 29 96.6 32 ............................T CAGCAGCCCGTAGAGGGCTACGCCTACTAGGA 34738 29 100.0 32 ............................. TCCTGCGAGTTCTCCACAGTGTCAATCAGGGC 34799 29 100.0 32 ............................. AGTTGACCGCGCCCACGGGTTACCAACCCTCA 34860 29 100.0 32 ............................. CGACCACCATTAATCGCGGCCAGCAGTGGCAG 34921 29 100.0 32 ............................. GTGGAGATGGGGGGTGGTCGTGGTAATGGTCA 34982 29 100.0 32 ............................. ACCTCGTTTCTTCTGTCATCTTGATAGTCCGT 35043 29 96.6 32 ............................T TCTGGTTTAGGCCTGTGACCTGCGCAAACGAA 35104 29 100.0 32 ............................. TAGCAGCAGCCGTTTCAATAATACTCATCGTG 35165 29 100.0 33 ............................. CGCGCTAAGCGAGTTCCGTACCGGCGCGTGCAA 35227 29 100.0 32 ............................. TACTGGTTTATGTTCCTGGCCTGCCAGAATAG 35288 29 100.0 32 ............................. CAGCGTGCGGTTAATCACGTCCGGCTCAAGTT 35349 29 100.0 32 ............................. CTCACCCTGCGCAAGGCCATTAGTGGCCCCAA 35410 29 100.0 32 ............................. CACTCGGACAAGCCGCGATTGCGCTACTCTCC 35471 29 96.6 32 .........A................... CGTCCGTAGATGGGGTTGCGACTTGTAGAGCT 35532 29 96.6 32 ............................T GAGGTGGCAAGGTGTCGTTCTTAGACTGCTTT 35593 29 100.0 32 ............................. CACGGACTTGCATAGCAACGCGCCCATCAAAC 35654 29 100.0 32 ............................. AGGCCACCGCCTACGACAGGCCACCGGGGAGC 35715 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 81 29 99.4 32 GCCTTCCCCGCATGAGCGGGGATGATCCC # Left flank : CTTCGCCGAGCTCCCAGTTGAGAACATCGGCTGGGCAAAGTAACCCCCTAATCCCCCTTAAGTCCGCCTTCTTGGGCTAGACTGCGAAATCCCCACCCCTGGTTTTAATAGCCTACCGGGTGGGGTTTCGAGATTAGTACCCCGGGCGCTCTACCCGATAGCGTCGAGGATCAAAACGAAAAAGCCAACCCCCGGATCCGTGAAAAGATTTGGACACCGGTAGCCGGGAACCTTGGCTCCGGACGTACCATCATAACCCTCCCCAACCGCGAGTCGGAGCAGGGCTACGACTTCGACTTGCTCAACCACGAATGGGTACTAGAAGATATGGAGCGGCTCAAAGTGGTCCGCCGTCCGGGAAAACCAGGGCAAAACGAACGGATGCCCCAAGCCCGGCTGGTCCCGATCCGTAAGAAAGAGACACTACGGACGCTAGTTGTTGAGAAGAGAAAGTAAAGCTAAAATTAGTCTCCAGTGACCGAAACTCCAGGTCAACAAGT # Right flank : CCTCTGCGGACTGGATCTGGGACATGGCCTCGGGCCTTCCCGACGCCCCCGACCTCAACGCCGACGCCTGCTGCCAGGTGGCCCACGCCATCGGCGTCCACCCGCTGGAGGCGGAATTCGATTACTTCACCGCAGTTGATGACAACGCCCCGGAGGACAACGCCGGCGCTGGCATGATTGGTACTATCGAGTACAACGCTTCGACTCTCTACCGCTACGCCACCATTAACGTGCCGGCGCTCATTGAGTCGCTAGGCTCTGTCGATGCCGCCGCGAAGGCCGTCGCCGCCTTCGCTGAGTCCTTTGCAGTCTCTATGCCAACCGGTAAGCAAAACACCTTCGCGAACCGCACCCGGCCAGAATTCTTCGCAGCTTCAATCCGAACTGACCAGCCGGTTAACCTTGTCGGCGCTTTCGAAGACGCTGTGAACTCCCGCGGCAGCCGTGTGGCTGAGTCAGTCTCGCGTCTGGTCGATCACTCACTGGACTCTGACAAAGCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTTCCCCGCATGAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCATGCGCGGGGATGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 39148-39359 **** Predicted by CRISPRDetect 2.4 *** >NZ_VXKJ01000048.1 Corynebacterium phocae strain CCUG 38205T contig_0000048, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 39148 29 100.0 32 ............................. CGGGGGGTGGAAAGACTTACTGGGTGAAATCG 39209 29 100.0 32 ............................. GGGTTGTAGCGCACGTATGGTTTCACCGCGCC 39270 29 100.0 32 ............................. GCAGCAGGGCGCGGAACCATCAGGCCCAGGCG 39331 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 GCCCTCCCCGCACGAGCGGGGATGATCCC # Left flank : GAATCATGGTTTGAGGACTCCGTTATCCATCTCTGGGACAACCTCCATGACAGAGTAGTAGGCGGCACTAACTTCGAATTTGACTCATGATAACCCTAGTTCTATCCTCATGCCCATCCTCGCTTCGTGGCCACCTCACCCGGTGGTTAACCGAAGTATCCGCCAACGTATTCGTCGGAAAAGTCACCCCCCGGATCCGTGAAAAGATTTGGACACTGGTCACCGAGAATCTTCGCTCCGGACGTGCGATCATGACCTTCCCGAGCCGGGAATCAGAGCAGGGCTACGACTTCGAAGTACTCAACCACGAATGGGAGGTAGTGGACGCTGACGGACTGAAACTAGTCCGTCGCCCAAGGAAAACAAGACCTTCGCAAAGCGACGCACCTAAGCCCGGATGGTCCCGAGCTGGAAGGAAAAGGCGCTTCGGGCGCTAGTTGTCACGAAGAGAAAGTAAAGCTAAAGTTAGCCACGAGGGACAATAATTGCAGGTCAGCAAG # Right flank : CAGCGCAAACTAAAAATGTTTACTTTTTTCTAGAAAACCCCGTGATAACATCGTAAGTATGTTTAAGAAAATGAAAAAGAGCCTTATTGCGCTCGCGGCACTTGCCGTCACCACAGCCCCTGTCCCTGCTACCGCCAATCCAGTAGATCAGTTGTCATCTACTGCACAGATGTCTTCGAACTCACTAATCAGTGAGGTCTCCAAGTTCATCCCCACCATTAGGGTGTCTTCTGCACCAGCACCTCAGACTGGAAATGTAGTTCTTCATCAAGGAGACCGCATCAACTTCCCTGGCCAAGGAACTTGTACTGTAGGATGGATTGATCACAGCACCCGGCGCGCCTATACAGCACGTCACTGTGGTCGAGATGGTTCTACTGCCACCACTGTCTCCAACCAGATGGTAGGTGTCATCCGACACAGCCCCCTTTCTCATGGGAAGAGCATCAATGATTACGATGTCGCTTACATCGAGCTAAGCCCTAACGTCACCCCAGGAG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCTCCCCGCACGAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //