Array 1 71162-71592 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRDF01000001.1 Aggregatibacter actinomycetemcomitans strain HK_961 NODE_1_length_431102_cov_61.7687, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 71162 33 97.0 33 ................................T CCTCTAGTTTTAACTGCTCTTTCAACTTTTCGA 71228 33 100.0 33 ................................. TTACCTGCACCAATCGATTTATTAGTAGTAATA 71294 33 97.0 33 .................G............... TCCCACGTCTGCGCAATATATTTTGAGCAATAT 71360 33 97.0 34 ..............A.................. AAAACGGTGATGATAAATGCGCCGTTTTGCCTGA 71427 33 100.0 34 ................................. ATGACTTTGAATTGTTTTGCAGATCTAGGCAAAA 71494 33 100.0 33 ................................. GATGGTGTACTAAACCTGATGTAATGCTAGTAT 71560 33 78.8 0 ..A....C.C..........A....C.....TT | ========== ====== ====== ====== ================================= ================================== ================== 7 33 95.7 34 GCGGCCATCTTCGGGTGACTGTGTGTTGAAACA # Left flank : ATGATTTTGAACAGACTGTATTGCCCATTGGTGCAGGGCTACTGTTAGTCGTAAAAAATAACCGTTAACTGTAGATTGGGTTGCGACGTTCTGTTTAATTCAACTTACAAATGCTTTTAGTCACTCCGAAAACCGATTGGTTAAAAACAAAAAGTGCGGTCAAAATCCAAGTCGTTTTTAAAATATACGGAAACTGCAATATATTCCCTGCATTATTCCATCAGGCACATTTTTATTTGGGGAATTTTGTTGGTGCTATCTTTTTTAATAGTATTAACGGCGTACCTTCAGCGATGTGCTTGTTATTCAGTTCGCTAGCCCATGCTTCTCATCAAATTCCTGCAAGCTAGCGATCCTTATTTTCTTTAACAATTTGCAATAGTTAATTCATTTGTATAACGATGACATGCTCGTTATACTTATTCCACTCTCTATTTTGAAATAAGTTAGCGAAAGACAGTAAGTAATCTACTGATTTTTCTTGTTTTTTCATATAGGTA # Right flank : TACTTGGTATACGCTTTTTATGAGCATTTAATCGGTTAAAAATATATGAGCTTGTTGCCTAATGGTAGGGCGGCGTTTAACAAAACGCTCTGTGCGAGTTTGATACTCGCCAAGCTCACTATTTATTGCCCTGCACAATTTTATGTAATCCTTTCTCAATTTTATTCAACATACGGGTAATCTCCAAAAAAACACCTCTAAAATCGACCGCACTTTTCCCCATAAATAAAAAAGCTGAATCTCTCTCGAAATCCAGCTTTTCTTTTACCTATTTATTACGCTAATTCAGTGCGTAATTTTTTCGTGACGTCAACCATGACTTTCAGTTGTTCTAGGGTTTCTTTCCAGCCGCGGGTTTTAAGTCCACAGTCTGGATTTACCCATAAACGCTCTTTTGGCACCACTTGTAACGCTTTACGGAGTAAGTGTTCGATTTCGGCGGCGGTTGGGACGCGTGGGCTATGGATGTCGTACACGCCCGGGCCTATGTCGTTCGGGTA # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGGCCATCTTCGGGTGACTGTGTGTTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.80,-0.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 122772-123196 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRDF01000003.1 Aggregatibacter actinomycetemcomitans strain HK_961 NODE_3_length_157095_cov_59.5989, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 122772 33 97.0 33 A................................ GGTAAGCATTCAGGCAAAGCCGAAAAAAACGAA 122838 33 100.0 32 ................................. CCAATACATGAACGTGGAACGCATAGAAGACA 122903 33 97.0 32 T................................ AATTAGTGTAAGAGGTCATTTATGGCATTAGT 122968 33 100.0 32 ................................. TCGCCGGAATGTGTACCGGTCTGCCAGTTTGG 123033 33 93.9 32 C...............................G GTAGAAATCCAACAAGTAAAACCAAAACCCGC 123098 33 97.0 33 C................................ CTACCGGCACCTGGAATTGGTTAGCCAATACCC 123164 33 90.9 0 ....T.......G...................G | ========== ====== ====== ====== ================================= ================================= ================== 7 33 96.5 32 GCAGCCACCTTCAGGTGGCTGTGTGTTGAAACA # Left flank : TTTGATGAGGTGAAAAATGTTAATGTTGATTACCTATGATATTTCTTTAGGAGACTCGGAGGGGCAAGCCAGGTTGGGCCGTATTGCGAAGCATTGCTTGGATTATGGCGTACGGGCGCAGTATTCGGTGTTTGAATGTGATGTAACGCCGGATCAATGGGTAAAATTGAAGGCTAAGCTACTAGCGACTTATGATCCGGATTGTGATAGTTTGCGCTTTTACCACCTAGGCAGCAAATGGCGGCGCAAAGTGGAGCACCACGGGGCGAAGCCGGCGGTGGATGTGTTTAAAGATGTGCTTGTTGTCTAGCTCGCTAACCCCTGGTTCTCATCAAATTCCTGCTGAGCTAGCGATCCTTGTTTTCTTTAACAATTTGGAATAGTTAATTCATTTGTATAACGACGATATGCCCGTTATACTTATTCCACTCTCTATTTTGAAATAAGTTAGCGAAATGCAGTAAGTAATCTACTGATTTTTCTTATTTTTTCATATAGGG # Right flank : GGGGACTCTGTTACATCTGAACTCTGATACCAACTAAACTAAGCGCTTTATAAAAATAAGGTGCTTTTCTTTTCCCGCATACCAACACAAAACTCCTTGCCCTTCCTCCACAAAATATATAGACTGAGTTCCGTTATTAGTCGGGGTGCTTTGTGCTGAGATGATACCCGTGAACCTGATACAGTTAATTCTGGCGTAGGAAACTAACAGAGAATCATATTTCCTTTCTTTTTCTCTTCTTCTCTTCATCGTCATTATTGCTGATTATCTTTTTTCATCGAAAAGGAAAAATTATGCAATATGGTTTTTGTCGCCCTGTGCCGGTAAATGGCGGAGGGCATTATGAGTAAGGTTGCGAGGGTTGACTATCGCCGGTTAGGACAGCGGCGGCGGTGCATGTCGTTTGGTTCATCGGTGACCGTGCAAAATACCTTGAACATGGTTGATATTTATGCCGTATCACTCTAAACCATCCAATGTCAGCTGAAAGCCATTGTGAC # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACCTTCAGGTGGCTGTGTGTTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.60,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //