Array 1 15499-12235 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJJ010000020.1 Planomonospora venezuelensis strain CECT 3303 Ga0436949_20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 15498 29 100.0 32 ............................. AGCTTCGAGCGAGGCGTTGGCACCTGGACGCG 15437 29 100.0 32 ............................. CATGGCCGGAGGCGGAGATCGTGTGAGTGACG 15376 29 100.0 33 ............................. TAGATCCTTACCGGCGCTGACCAGCAGATTTCC 15314 29 100.0 32 ............................. GAACCTTGTTGCCGGAATAGATAAGGGCAAGG 15253 29 100.0 32 ............................. GCAAGGGGTACCCGGTGTTCTCCACGCCGCTG 15192 29 100.0 32 ............................. GAGGCCGCCGGACCTTCCGCCGAGGGGGAGCA 15131 29 100.0 32 ............................. GCGACCATGAGCAGCGCGGAGGTCGCGGGGTC 15070 29 100.0 31 ............................. CCGGGATCCGCCAGATCCTGGACATCGGGTG 15010 29 96.6 32 ............................C TGCTCGACCACCGTCGCCCGCCACGAACCCGA 14949 29 100.0 32 ............................. GGCGTCGGCGATCTGGCGGTAGACCGGCGTCT 14888 29 100.0 32 ............................. CACCTCGTCCGTGAGCGCTTCGACGCTCAGGA 14827 29 100.0 32 ............................. TCAGCGGCCTGGATCTCGGCGCCTACGAGAGT 14766 29 100.0 32 ............................. GGCTTGCCCGCGCCGACGCGTGCAACTGCTCG 14705 29 100.0 32 ............................. GTCACTGTCGCCTGGGACGACGGCCAGGTCTC 14644 29 100.0 32 ............................. CCGTATGGGCTGGCCGCAACGACGACGGCCAG 14583 29 100.0 32 ............................. TCGAGCTGGGCCAGGTCCCGGCCGATGACCGT 14522 29 100.0 32 ............................. CCCTTGCCGGGGATGGGCAGCATGACGGGGGC 14461 29 100.0 32 ............................. GGTGAGTTTTCCTGCCCCATCGCACCTCGAGG 14400 29 100.0 32 ............................. CGGCACACCCGCCCGCCGTACGGCGAGCACGG 14339 29 100.0 32 ............................. CAGGACGTTCTGACAACCCTGCTCGCTCGCCT 14278 29 100.0 32 ............................. ACCACCACATCGATGAGCTGGTGGCCTACATC 14217 29 100.0 32 ............................. GCCGAGGATGGCGTCGTGTACGCGGTGGCCGC 14156 29 100.0 32 ............................. GGCTGGCCGGCCGAGCACGCCGCCTACGCCGG 14095 29 100.0 32 ............................. GAGTTTCCCCATGTCGCAGGTCCCGAGCGTGG 14034 29 100.0 32 ............................. TTCTTGACCAGCCCGGTGACCTTCTCCACCTT 13973 29 100.0 32 ............................. GCGATCGGGCTTACACCGTCTGGCACGCACAG 13912 29 96.6 32 ............................C GATGCGAGGTCGGCGACGTCCTCGGAGGGCTG 13851 29 100.0 32 ............................. CTACGAGGACTCCCCATCCAGGCGCTGCCCCT 13790 29 100.0 32 ............................. CGGGCCTGGGTGGTGAGGTCGAGACCGCGGGC 13729 29 100.0 32 ............................. CCGTCGGGTGGCCAGGCGTCGTAGCCGCGGCC 13668 29 100.0 32 ............................. GTCCGCTCTGCGCTGGACGGGACGAACGAGGA 13607 29 100.0 32 ............................. ACCTCGGAGACCTCCTGCATGCCGTCGCCCAG 13546 29 100.0 32 ............................. CGTGCGCCCGCTGGCCTCCGTTGTGGAGTCGA 13485 29 96.6 32 .....T....................... CGGCTCGGTGACCACGTCATCGCCGCCCAGCA 13424 29 100.0 31 ............................. ACCGGCGGGCAGCTCGACCGGTTCTCGGGGC 13364 29 100.0 32 ............................. CTCTGGCCGTACGGCTCGGTAAGGGGGGATGG 13303 29 100.0 32 ............................. GCCAACGCCTCCACCTACACCCACCTCGCCCG 13242 29 100.0 32 ............................. GGCGACGTCGTCACCAGCCTGACCTTCGTGTC 13181 29 100.0 32 ............................. ACGGGCCGACCCGTGGACAGCGGCGGGCAAGG 13120 29 100.0 32 ............................. GAGGAAACGTGACGTCCCCGCAGGAAGAGATG 13059 29 100.0 32 ............................. GCGTTCGACGTCGCGATCGACGTGATCGACAC 12998 29 100.0 32 ............................. CGTTCGCATGGGCGTGGGCCCAGCCGATCGCC 12937 29 100.0 32 ............................. ATCACAGACGACGTCGACCTTACCGAGTTCGA 12876 29 100.0 32 ............................. TTCGTGCCGTTGATCTTCTTATAGGCGGGCGC 12815 29 96.6 32 ...........................T. GCGTACATCGGCCTCTGCCCGCACTCCACGCA 12754 29 100.0 32 ............................. AGAGGCATCGCGATGCCGCCGAGCGATCAGTC 12693 29 96.6 32 ............................C TCCTACGAGCCGCTTGCCATCACCAAGGGCAC 12632 29 96.6 32 ......T...................... CCCTGGCCTCTTGCGCACTCGCGGTTGGTCAG 12571 29 100.0 32 ............................. CGCGGCTACCGGTTCGTCGCTGACGCCGAGCA 12510 29 100.0 32 ............................. CTGGCCGCACCGGAGACAGCGACCTCGCCCGA 12449 29 100.0 32 ............................. TCCCACCGTCCCCGCCAGCAGGCGCCTCAGTC 12388 29 96.6 32 .......................A..... TTCAGCTACATGCCGTCGATCCGCATGATCGG 12327 29 100.0 32 ............................. GTGATCATCGACTCGCTGGGGGCCTGAGTTGT 12266 29 89.7 0 ...G........T.A.............. | GTG [12240] ========== ====== ====== ====== ============================= ================================= ================== 54 29 99.4 32 CCGATCCCCACGCCCGTGGGGGTGAACCG # Left flank : GGACGTTATCCATCTCTGGGACCCGGATCTCGGATCACTTCCGGCCGGCGTCAACTACGGTGACGAAGCGGCCGGTGCCGTTGACAACCCTTGGTGAAAGCAGGCCGCAATGGCATCCATGGTCGTGATCTCCACAACCGCCGTCCCTGACCACGTCCGAGGAGCCTTGAGCCGATGGCTGATCGAACCCGCCCCGGGGCTCTATGTGGGGACGGTCTCCGCCCGAGTCCGCGATGAACTGTGGTCAGCCGTCAGCGCCTGTGTTGGCGAGGGTGCGGCCGTTTGCATGCATCCAGCGGACAACGAGCAGAAGTTCGTCATCCATACGGCGGGCGAGCGCCGTCGTCGTGTAGCGGACTTTGATGGACTCCAGCTGGTTCGTTTCCTCCCAGAGGATTCCGGCGTCTCTTGATCGGCGGAAGGTTGATGATTTCCGATCACCGACAAACTCCGACACGTATGTCTTCGCAGTTCAGGGAAATTTTTCCAGGTCGGTAAGT # Right flank : TTGTATGGGCGTTACCGTCGGGCAGATGGAGCTCACTCCCGTACCCAACGAGGAGGAGAACCGGGCCGCGGGTGCGGCGGCGCCGACGTCTGAAGACGCTGCACGAGTCGCCGGTCTGATGGGAGCGAGTCATACGTTCACGACGGCGGAGTCATGGTTGACTTCACTTCTCTGCAAGGCTGAGGCTGATGGTGCTGCTTGCCGTACCCGGAGGTGGGCTGCTCAGCGGTTGCCTTGGCGTAGGCGTCCGGAGCCACCGTCGGGGGCGCGTGATCGACGTTTCGAACACGTGGAGGTCCCAGTCGGGCCGCCACGCCGGGCAAGGGAGCGGCCACGGGGTACACGGACATGATCGTGTATATGTCGTGAACCCAGGGTGGGGCAGTGATCGTTGACTCGTTGGGCGCCTGGGCCGTCGTCGTGGGGATCGTGCTCGGCCTGCGGGCCCTGTACTTCCTCATCGAAGGACTGCTGGAGCGGCTGGTCTACCTGTCGGTCGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGATCCCCACGCCCGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGATCCCCACGCGCGTGGGGGTGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 24874-28074 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJJ010000020.1 Planomonospora venezuelensis strain CECT 3303 Ga0436949_20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 24874 29 100.0 32 ............................. TAGCAACACCGCTACCAACAGGAGAGGAACCC 24935 29 100.0 32 ............................. CCGACAAGACCGCCGCCTCGCTGGCCGAGCAA 24996 29 100.0 32 ............................. TCGGTCGGGCTGGTCCGGTCGGCGGGGTCCTG 25057 29 100.0 32 ............................. CGGGAGGACCTTGCCTCTCTCCTCACGCTGTA 25118 29 100.0 32 ............................. ACCCTCCCCGACGCCATGGGGATCCTGATCCG 25179 29 100.0 32 ............................. CCAGGCGGGGATGGAGACGAACGCGGTCTCCC 25240 29 100.0 32 ............................. CCCCGCCGCGCGTACGGCCCGCCCCCGCCCGC 25301 29 100.0 32 ............................. GCATCGCATGCGGTGGTGTCCTTGCCCGAGGC 25362 29 100.0 32 ............................. GAGCTGCTCGTCGTAGGGGCCGGAGTAGAGGA 25423 29 100.0 32 ............................. ACAATGATCATGGCGGCCGCGCGTGGTGCCTG 25484 29 100.0 32 ............................. ACCACAGTCTGGACGCCGCGAGGTATGCGATC 25545 29 100.0 32 ............................. ATCAGCACCCGCAATACGTGGTGGTCGACCCG 25606 29 100.0 32 ............................. GTCTCGGCTCCGCGGCTGTCGTGTGTCATCTC 25667 29 100.0 32 ............................. ATGTCTCCGGCGATCGTGCGGTTCGCGCAGGG 25728 29 100.0 32 ............................. ACCCCAAGTGACGATCTGATCTTTGATGGTGG 25789 29 100.0 32 ............................. GCGATCGGCCGGAACGTGCAGATGGCCCGCGA 25850 29 100.0 32 ............................. CTGTACCGGCTATGGCCAAGCTCGGCGGAGAC 25911 29 100.0 32 ............................. CCGCGGGGGGGTCGGCGGCGGTCAGTTCCGCA 25972 29 100.0 32 ............................. CCGGTCACCATCGTGTGGATCAGCCAGGTGAT 26033 29 100.0 32 ............................. TGGGCGTTCGGGGAACTCGACGTCTTGATGGC 26094 29 100.0 32 ............................. GATCATGGTTTGAGGGGTTGTGCAGCCGGCCC 26155 29 100.0 32 ............................. GTGCAGGCGCACCCGGCCGTGGTGACCGGGAC 26216 29 100.0 32 ............................. TCTTCGCTGTTGTTGTAGGCCAGCACCACCGC 26277 29 100.0 32 ............................. AACGCCCGCGCCGCTTCCTGGAATTCGAGGTC 26338 29 100.0 32 ............................. CCGTCCAAGAGGCGCTGCTGCCGCGCCTCCAG 26399 29 100.0 32 ............................. CACGCACTCCGATGTGCGGCGGGTTATGGCGC 26460 29 96.6 32 ............................C ACCGGGCCTTCGAGTGGTCCGCCTCTCCAACA 26521 29 100.0 32 ............................. TCAGCGCCGTCTACGTGATCGGTGTCCTGCGT 26582 29 100.0 32 ............................. ACGGCGGGCGGCGGTGTGGGCCTGACCGCCTC 26643 29 100.0 32 ............................. GCGATCCGGCTGTCGTCCGGCTCCCGGTGGAA 26704 29 100.0 32 ............................. GTCCGCCTGCTTGCTAACTGGCTTGCTAGTTG 26765 29 100.0 32 ............................. GTACGGACGTCGACGCTCGCCATCCCGCGGAC 26826 29 100.0 32 ............................. CACAGCTCATCTTGGAGGGGGTGGAGGTGTCG 26887 29 100.0 32 ............................. TCGACACCGGCTCCGTGCCGCCTCCGCCCGGT 26948 29 100.0 32 ............................. GGCATCTGTGCCAGGGCTTCATGGGCGACCAG 27009 29 100.0 32 ............................. GCCAGTCGCGAGAACACGCGGCTGCTGATCGA 27070 29 100.0 32 ............................. ACCGGGCAGGACATCGTCCGCGTGGATGAGCC 27131 29 100.0 32 ............................. CTCATGGTCCGGGGCGCTCTCGGCAATGTGAT 27192 29 100.0 32 ............................. GAAACCCCGCCATGCAGACCCCGGACACCGGA 27253 29 100.0 32 ............................. GGTTTCGGTCACGGCATACACTCACAGCGCAC 27314 29 100.0 32 ............................. GTGGTCGTCGAGCCACTGCCGGCCCTCGGCGA 27375 29 100.0 32 ............................. AGGAGGAGGGAGTGGGGGAAGCGGAGCCCCCG 27436 29 100.0 32 ............................. GCACCTGCCCCGCCGTCTACGAAACCGACCAC 27497 29 100.0 32 ............................. CCCTACCGCGGCAGGCACCGCTTCGTCCCGGA 27558 29 100.0 32 ............................. CCCCGGAGCAGTCCGGGGCTTCGTCGTTGGAG 27619 29 100.0 32 ............................. GGTCCCACCTGTCAGGTGGGACCCTTTCGTAT 27680 29 100.0 32 ............................. ACGTACATCGACAAGATGAACGCCGCCGCCCG 27741 29 100.0 32 ............................. GTCAACACGCGCCCGGATCACGATGGCGTGGG 27802 29 100.0 32 ............................. ATGCCAATAGCCCCAGAACCGGCCGGGCCCTT 27863 29 100.0 32 ............................. TGACGACTTGTGTGTCGTGATGAAGTCGTGAC 27924 29 100.0 32 ............................. CGCGAGGAGATCCGCGCGAAGGACGCCGAGAT 27985 29 100.0 32 ............................. GCCGGTAGGACGGCTCTCCGCAGGCGCGTTCA 28046 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 53 29 99.9 32 CCGATCCTCACGTCCGTGGGGGTGAACCG # Left flank : AATCGTCGAGCTTGGCATAAGCATCCTCATCCATACTCTGGAAGCAGGCCATGATCTTCCCGATGTCATGGAATCCGGCCCAGAGAGAAACCACCTTGCATGCTGCCTCCTCATCCATCCCAAGGCCCTCAGCAATGAACCGACCGGTTCCTGGCGAGAGATAGTCCCTCCACAAGACGGTCGCCATGGCCGCAGTATCCAGCAAGTGAAAAACCAAAGGATAAGGATTATCCAGCCCTCCCGACTTACCCCACAACCTCAGATCGACGGACAGCCGTTCTTCAGACTCGCCCATACACCCTCCCGTGCACCCCAGATGAGCTTCTGCAGAGGTCAAGGATCAGGAGCATACGAGAACGCTCCGACAAAATCTATTCGTTCACAGCAACATCCAAAATCCTCAAAATACGAGAATTTTTCATATCGGCAAACTGGATCACCGACAAAATCTTGTCGCTTGCATATGTGCAGGTGAACCGTATCCTTGCTGCTCAAGGAGT # Right flank : GTGATCGACATCAGCAGCACCGGCCCCGTCCGCCCGATCCTCACGTCCGGGTCATGCCCCCTGTAGTGGTGTAGCCGCGCGAAGTTGATCTGTCCGCTGGGCGGAGAGTTCGCCGTGGGCCTGTTTGTCGGGATAGAGCTCGTCCATGCTGCCTTCGGGCAGGTAGCGGCGAGGGAAGGCGATCCACTCGTCGTGCATCTCGACCAAGACGGCGGTGGTGAGCCGTTCGAGGGCTTCGGGGTTGGGGAAGATCTGCACGACGTCGGCTCGGCGCTTGATCTCGCGGTTGACTCGCTCCAGCGGGTTGGTGGACTGGATCTTCTTCCAATGCCGGTCGGGGAAGTCGGCGAAGGCGGTCAGGTCGTCCTTGGCCTCCAGCAGCATGGTCTTGACCTTGAGGAACTGGCGGCCGAGCAGGTCGGCGACGGTGTCCAGCTGGGCGCGGACGGCTGGTGCGGCGGGCTGGGCGAAGATGGTGCGGATGGTGGCCGCGACCATTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGATCCTCACGTCCGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.50,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 3 29489-29820 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJJ010000020.1 Planomonospora venezuelensis strain CECT 3303 Ga0436949_20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 29489 27 82.8 32 ..-..-.T....T.C.............. TGATCGACATCAGCAGCACCGGCCCCGTCCGC 29548 29 89.7 32 .......T....T.C.............. GCGGCGTGGTGCTCGGCGGTCCACTCGCCGCT 29609 29 89.7 32 .......T....T.C.............. CGCGGGACCCTCGACGGTGCCGAGGCCGGCGC 29670 29 100.0 32 ............................. AGCTGACCCGTGTAGTTGGGCAGGTTGAACGT 29731 29 100.0 32 ............................. GTCAGGTTCGCAATCAGCTTCCTTGGCCTGCA 29792 29 79.3 0 ....................A.C..CGTA | ========== ====== ====== ====== ============================= ================================ ================== 6 29 90.2 32 CCGATCCCCACGCCTGTGGGGGTGAACCG # Left flank : GGAGACCCCGCTGTCGGCGCCCAGCGCTTTGACCAGGTCATCGACGCTGCGGGTGGAGACTCCGTGCACGTAGGCCTCCATGATGACCGCGTACAGGGCCTGGTCGATGCGGCGTCGGCGCTGGAGCAGGCTGGGGAAGAAGCTGCCGGCGCGGAGCTTGGGGATGGCCAGGTCCAGGTCACCGGCCTGGGTGGTGATGACCTTCTCCCGGTGGCCGTTGCGCCAGGTGGTGCGGGAGTCGGTGTGCTCGCCCGGTGCGGCGCCGATCCGGGCGGTGGCCTCGGCCTCGATCAGTTCCTGCATGATCCGCTGGGTCAGGATGCGGATCAACTCGATTCCATCAGCGGTCCGCAGTGACTCCAGAAGGCGGAGTAGGTCATGCTGGGACAGGGCCATCGTGTCGCCTCTCGCTTCGAGCTTCGCTACTCGGAGAGTCGCGCGATGGCCGCCTTCTGACCAGGGTCTACTTCAAGATCTCTGCTACACCACTTAGCGGGACA # Right flank : AGTCAGGCGGCCAGTTCCAGGGGGATGACCTGGCCCGCCGTACGGCGGAGGCGGTGGCTGAGGGCGTCCGGCCGGGAGACCACGACGACCTGGACGCCGCGGCGGCGGAGCCAGTCGGCGAGCTCGGTGAAGATGCCGTCGCCGGATCCGATGATCACCCGCTCGAAGCGGTCGTCCAGGTGATCCAGCCGGATCACCTCGCAGAGCGCCTCGTCGGCGCCGTCGCGGCCGGAGCGGATCAGGATCTGGATCCCGGCGAGGGCGAGGCCGACGGGGACCAGGGCGCCGTGGTTGACGGCGGCGACGTACTGGTCCATGCCGCTGGCGGGGACACGCCGGCGATAGTGGTCCATCATCGTGACGACGTCTGAGGTGGCGGGGCGCGGGGCTCCGACCAGGTTTTCCACGTCCAGCAGGTGAACGGACCGGCCCAGCGAAAGATTACGCATCGCGATGCCCCCTTGCCTCAGCGCTACCACCACATGGCCTGCACTTTAATG # Questionable array : NO Score: 5.46 # Score Detail : 1:0, 2:3, 3:0, 4:0.51, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGATCCCCACGCCTGTGGGGGTGAACCG # Alternate repeat : CCGATCCTCACGTCCGTGGGGGTGAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCACGCGTGTGGGGGTGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //