Array 1 4990-142 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMAB01000024.1 Tepidibacillus fermentans strain DSM 23802 Ga0244687_124, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 4989 37 100.0 37 ..................................... AAAAAAAGGTGATACGTTATGGAGCATTGCTAGCAAA 4915 37 100.0 36 ..................................... ATTAGTGGATTATATAAAGGCGCTGGAAAACTTGCA 4842 37 100.0 36 ..................................... TGTGTACATTTCCCCCTCACCCGTTTTATGGTATAA 4769 37 100.0 36 ..................................... TTTACAATCGCTAGCAACTCATCATCAGTTAGTTTT 4696 37 100.0 36 ..................................... AGCAATAGCCTTGCCTCGTTTGGTGTCAGTATACCT 4623 37 100.0 35 ..................................... TGTATCCTCTGCCCAAACACACCTTTGACATTTTT 4551 37 100.0 36 ..................................... AAGTTATAAGCATATGCCAACTCTGTCCTTGCTATT 4478 37 100.0 38 ..................................... TTAACAGCTGGTGAAGCCGATGAAATTAACGCACGCTG 4403 37 100.0 35 ..................................... AAAGCATTTGAAGAAACCAAAATGGGATAAGAAGA 4331 37 100.0 36 ..................................... CTAAGTTTGACACAACAAATATTCCGTCTACGTTGA 4258 37 100.0 39 ..................................... ATAACTGTACTCTTAACAGATTGCACTGCATTCCAGAAT 4182 37 100.0 38 ..................................... ACGAAAAATTCAATATCATTTTTCAGATGAGGCAGCAA 4107 37 100.0 37 ..................................... ACTTCATCCGCTCTCTCGTCTCTTAATTGAATTTCCG 4033 37 100.0 36 ..................................... AAACAGAACAAAGTAAGATCGTTTGGAATGAAATCA 3960 37 100.0 37 ..................................... TCAACTAATTGGATACCATCCCAATACACATAGTTGG 3886 37 100.0 38 ..................................... ACGGGAAAGGATCTCACGCCCACTTAGTTGAGTTTGGG 3811 37 100.0 36 ..................................... TGTCTGATTTCTACCATAGTAAATCCTTCTGTTTCC 3738 37 100.0 37 ..................................... TTTCTATTCCTCCCAATTCTAAAATGGCAAATCTTCA 3664 37 100.0 37 ..................................... GCAGGAACAGCTGCCCATGTTGTCCCATCGTCGCTAT 3590 37 100.0 38 ..................................... AGACTTGGACAGACGTTGCAACCGTTTGGGCTGATGTA 3515 37 100.0 35 ..................................... CTAAGTTTGACACAACAAATATTCCGTCTACGTTG 3443 37 100.0 36 ..................................... GAACAAAGTTTCGTATGTGTCGGACGGCGTTTTTAA 3370 37 100.0 37 ..................................... CAGTGTCAATAGCATCCCAACCAGCCAAAATTTCATT 3296 37 100.0 36 ..................................... CTCAGAGCGTGGTAAAATTAAACCAAAGGAGAGGTT 3223 37 100.0 38 ..................................... AATGAAGTTCATTCCACACAGCTACCAAAAGTATTGCA 3148 37 100.0 38 ..................................... TTGCTGCGGAATGAAGTGTTCCGTATTTTTTCGACGAA 3073 37 100.0 37 ..................................... TCATAAACTTGAATTGCAGTTCTGATTGTTGCCATGT 2999 37 100.0 35 ..................................... CAGCTGCGCTCTATGGAAATTACAACGGCGTGGAT 2927 37 100.0 37 ..................................... TCATCAGGATCTATTGCATATAATCCGATTGTTCGCA 2853 37 100.0 36 ..................................... GTGTTCCGATTGCCAGTGTTCCGATTGCCAGTGTTC 2780 37 100.0 36 ..................................... TAATGATCTCTATCTCTTTTTCTTCAAAAATTTTCA 2707 37 100.0 37 ..................................... ACAACGAGCTTCCTTAATCGGTTGGCACTGATGTTAC 2633 37 100.0 37 ..................................... TCGAAAACCTGAACATGGGGCTACATACGACGGGGGT 2559 37 100.0 36 ..................................... ACGAGCTGTATAACCTGACACATAATACGTTGCGCT 2486 37 100.0 36 ..................................... TCGAAAACCTGAACATGGGGCTACATACGACGGGGG 2413 37 100.0 36 ..................................... CCAATTCACTCATATAAGCATTTTTAACGTCGTTTT 2340 37 100.0 37 ..................................... GAGATGATGTAGTATCTCCAGATACTTCACCTTCTTC 2266 37 100.0 37 ..................................... ATGTTTCGTCTGGTTGGCGAGCGTCAGTGGATCCAGT 2192 37 100.0 38 ..................................... TTTGAAATATGGTCAGCACTACATTCAACAATATGAAG 2117 37 100.0 37 ..................................... TCTACAATCACGCGATGCACCACTCCATCCATTGATT 2043 37 100.0 37 ..................................... ATTTCCATAAACACTTTTGATGGAGAGTGTATTCCAA 1969 37 100.0 37 ..................................... GTTCACCATCTTTCAATGCGTTGTTACCTTTTTTGGT 1895 37 100.0 37 ..................................... ACAACGAGCTTCCTTAATCGGTTGGCACTGATGTTAC 1821 37 100.0 37 ..................................... TCGAAAACCTGAACATGGGGCTACATACGACGGGGGT 1747 37 100.0 36 ..................................... ACGAGCTGTATAACCTGACACATAATACGTTGCGCT 1674 37 100.0 36 ..................................... TCGAAAACCTGAACATGGGGCTACATACGACGGGGG 1601 37 100.0 36 ..................................... CCAATTCACTCATATAAGCATTTTTAACGTCGTTTT 1528 37 100.0 38 ..................................... ATCAATAATATCTAATTCAACCGTTTGACCATCAATAG 1453 37 100.0 37 ..................................... AGAACAACTGCTTTCTTCATTGCTTCTAATACCCACT 1379 37 100.0 40 ..................................... TCTTACAATTCCTTGATTGTCAGTATCAATATAAATAAAG 1302 37 100.0 38 ..................................... TTCTGATGAAGATAAGACAATTGTATTGCAAACCAATG 1227 37 100.0 36 ..................................... TTTTAAGTGATATTTTCTTTCTTTTAACCATATACA 1154 37 100.0 36 ..................................... ATAATCTGTGTCTTTAACTAAAACCTTTTTGTAATT 1081 37 100.0 37 ..................................... TAAAAGGCAAGAAATTTAGCCAAACAATTTAAGGAGG 1007 37 100.0 38 ..................................... TGAGGAAGTCATTGACCTTTGGCATTTCCTTGTTGCTC 932 37 100.0 39 ..................................... CAGAAGCGGATGTTTGAGTGCAGCCATTTCCTGAGCACA 856 37 100.0 38 ..................................... ATAAGTACGGAAAGCAGCAAGTTGCAGTTGTCGACCGT 781 37 100.0 43 ..................................... AACAGCAATACGCTGAAGGCAGTTCAGCTCGTTGGAGAGCTTG 701 37 100.0 36 ..................................... GGATTTCCTGTGTCATGTGCCACTAAAAACTTTACC 628 37 100.0 35 ..................................... TGTCTTATCATCATTATAAACTCCAGAATTTTTTA 556 37 100.0 36 ..................................... TGGAGCAATTGTCATCATTATTATGACCAGGTGGCA 483 37 100.0 43 ..................................... CTTTATTAATTGGCATTGCACGTTGTGGATATTGTGGCAGTAG 403 37 100.0 35 ..................................... AGTATGGGGAAAAACAGGTTCAAACGCATATTTAA 331 37 100.0 43 ..................................... CTTTATTAATTGGCATTGCACGTTGTGGATATTGTGGCAGTAG 251 37 100.0 36 ..................................... ATTCGACCACGTTCGCGCAGAAATTCGGAAAAAAGA 178 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 66 37 100.0 37 GATGCAGTAACTAGACTCGACTAAAGAGGATTGAAAC # Left flank : TCATCTGATTTTACCTGGATACTCGGAGATGAACGCACAAGTTTTAATAGCCATGTTCAATTTCAGCAGCTAGATGATATTGGTTCTAATGCATTATTTCAAAACATTAATACGTATGATGAAACTAAGAGTAAAATCGGGAAAGATCGCTTATTGTTGCCAGTTGCTGTTCCCTATCTTTTAAAATCTTCAAGTCGAAGCTATACACATTTTGTAAAAGCTGAGTAGGGAGGGATACCCTCCTCCCTACTACTAAGTTAAGAGAAAAGTTATCATTTTGTATAAGTTATTGCAAAATCTCATGAAGATAGTTTAAAGTTATATTTAGATGCATTAGGATAATAAAGAACATAGATTAGGGCATACTAATAAAAAGAAGAAATATAAGTTTTCGCAGATTAAAGACCATTTTTAGCAAAAATTAGATCTTCGAAAGTTTCTGATCAAAATTGACTTTAAAAACTGCATCAATACTGTATTTTTCCGCACTAATTTTCGCG # Right flank : CTGTTGAAATCATAGTTGACTCTTCATATATTTTTTTCGATGCAGTAATATGCGTAAAATATTTCTCGAGGAGATTGGTAGAAAATACTAGCAAAAAAAGAGAAGGCGTTCTATCGTAAATGTATGCTTTAGCAGGCAAATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGCAGTAACTAGACTCGACTAAAGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.90,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 1 174992-174736 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMAB01000003.1 Tepidibacillus fermentans strain DSM 23802 Ga0244687_103, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== =================================== ================== 174991 38 100.0 35 ...................................... GTAACTATATCACTTACCAAGCATTAAAACGGCAG 174918 38 100.0 35 ...................................... TAAAATTTCGTACCAATTTTAACTTCTGCATCAGG 174845 38 100.0 35 ...................................... TCCAAAACATTTCAGTTTCGATATAATCATCGGTT 174772 37 81.6 0 ...............T.T...G......-..A....AG | ========== ====== ====== ====== ====================================== =================================== ================== 4 38 95.4 35 GATGCAGTAACTAGACTCGACTAAAGAGGATTGAAACA # Left flank : CCAAACAGTAGTGCGGTAGCCTGTGCATAGCGTACAAAAATAGGATGCTGATATTATTAGTATTAAAGCTTGATCGAGAAAAACTTGACACAAA # Right flank : AAGTAACAAAGATTGGTAAAGATGATGAAGGACGGTATTTTTCGTGAAACTATTCCAATACTTCCTCGATGAATACCGTTTTCTCTTTAGCCAAATCGATTTCCATTGCTTCAATTTGATTTGAATTCTGTTCTTTTAAGAGTCGTATTATAGGGCGGGTTGGTAATCCTTTGTGTTGTCCCACAACAATACCGATTTCGTTTGTAGATAATCTTACCGTACTCCCATTTGGATAGGTGGCTATGGACTGTAAAAACTGCCAAACGATATCATGTTCGAAAAAATGATTGGTAAGGCCCATGATTTTTTCCAACGCTTCGTGTGGTTTGATTCGTATATTTCCCATATGTGGGTTTACAAGATTGTCATAATAATTCGCTAAGCCTACAATCTTAGCATATAAATGAATCTCATCCTTTTTTAACCCTCGCGGTGAGCCTTTGCCATTCATGTATTCATGATGTTCTAACGCAACAATCGATGAGACAGCATTGATCTCC # Questionable array : NO Score: 2.63 # Score Detail : 1:0, 2:0, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGCAGTAACTAGACTCGACTAAAGAGGATTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.53%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.90,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 28227-29619 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMAB01000025.1 Tepidibacillus fermentans strain DSM 23802 Ga0244687_125, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 28227 30 100.0 37 .............................. CAAATGTCATAAATTTCTCCTCCTTAAAAAGTTTCAA 28294 30 100.0 37 .............................. AGTTTTGGCAATAGGACAAGTTTACGCTTGTCTTTGC 28361 30 100.0 36 .............................. GTTCATCAGCAGTTTTAAAACCATGATACGGGCTTG 28427 30 100.0 35 .............................. GCGCGAACATCATTAGCCCACGCAACCTGTTTTTC 28492 30 100.0 41 .............................. ATTAACTGCTGTAGGTTGAGCATCATTACCGCCAGCGCTGG 28563 30 100.0 39 .............................. CGAAAATTGTTCGAATTGTAGATCGCTCTACATGGGGTA 28632 30 100.0 36 .............................. AGAAACATACCATAATACGTCACCTAGTTCACTTTT 28698 30 100.0 38 .............................. CAGCAAAACTCTCTGCTGCCTTGATTGTTTGCTTTTCG 28766 30 100.0 39 .............................. AAAATCACTCCTTTAAATTTTTGTTTGTTTTCGTTCTTC 28835 30 100.0 39 .............................. ACCGCTGTAACTGGTTGGCGTGATAAAGTGACTTTTAAG 28904 30 100.0 38 .............................. GAGAGGAGGGAGCTTATTTTCAAAAACGAAAAAAAAGA 28972 30 100.0 40 .............................. CATGATAGCCTTCCATAAAGTGCTTGTGCTACTTTGGTCC 29042 30 100.0 39 .............................. CTCTAATGGGTGGACGAGCATCTAAACGTAAAGGATATA 29111 30 100.0 37 .............................. TTTCAAGAAAAAGAAGAAAATGGTTTCTGGAGTGATC 29178 30 100.0 40 .............................. TTCAGGGGAAACTTTATAAAGTTTCCCTTTTTTAAAAAAA 29248 30 100.0 39 .............................. CTTCAGGAGTGATTTCTAATATTCGAGTCGGCGAATTAG 29317 30 100.0 36 .............................. GGACTGAGAGAAAAATACTTGCGCTATCAAGGTGTG 29383 30 100.0 40 .............................. TATTTCCCGGCTGCCGAATCATAATCAATGTAAGCGTAAT 29453 30 100.0 41 .............................. TCATGACTAGATGGCACGAAGATGACCTAGTTGGAAGACTG 29524 30 100.0 36 .............................. GAGCACGAGTACTAGAACAAGAAGAAACAGCGCAAG 29590 30 90.0 0 ..........................GGG. | ========== ====== ====== ====== ============================== ========================================= ================== 21 30 99.5 38 GTCTTTATCTTACCTATGAGGAATTGAAAC # Left flank : AAATCTATGAACCATATCAATCATTGTGGTAGGTGATCGATTTGTTTGTTATTTTAGTTTATGATTTTGGCGAAAAAAGGGTTGGTAAAGCTCTAAAAATAGCTCGAAAATATTTACACTGGGTTCAAAATTCCGTGCTTGAAGGCGAAATATCTAATGCAAATTATACCAAATTGAAGATGGAACTAAGAAGCATAATGAATTCAGAAGAAGATTCGGTTATCTTTTATACATTTCGAACCAAAAATTATTCAAAAAGAGAAGAATTTGGTTTAAAAAAAGGCGGAGATGAAAATATACTATAAGCTAATTTTGTCGTCGATCATAAATCTTGTAGTAATCCTAGGAGATCGACGACAATTTTATTTTTGAAGAAATTAAGCGATAGTAAAAGATATATGCAGAAATATGAGATTTATGACAAATTTAATTTTTATAAAATTTTAAAGCAGGAATTTCTCTTTTATTGTAGAAATATTATCAAAAAGCCACTTTTCTGG # Right flank : TGTCTAAAAAGTCAGAGTAACTGACTTTTAGAGCGCCTCCATTTTTATCAAATTTTTATAAAAAATGCACAAAAAAATCGTCCTATCCT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTTATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //