Array 1 4846923-4843026 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP041244.1 Actinomadura sp. WMMA1423 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 4846922 37 100.0 36 ..................................... TCCTGCCAGATCCGCGCGGCCCGCGAGAACAGGTTG 4846849 37 100.0 34 ..................................... TTGTAGGCCAGGACGAGCCCGGCGACCAGCCCGG 4846778 37 100.0 39 ..................................... TCTCGGGCGGACCCCCGCCCGGGAAGGAGCATTCACATG 4846702 37 100.0 36 ..................................... TGGGACGGGCTGGCCGCCAAGGTGATGCCGTCTCCG 4846629 37 100.0 39 ..................................... TTCATCACCGGAGAGCCACAGGAGGACCTGGAGATCCCG 4846553 37 100.0 36 ..................................... CGTCGAGCTTCCCGAGCACGTGCGGCAGGTCCGGCA 4846480 37 100.0 34 ..................................... TTGTAGGCCAGGACGAGCCCGGCGACCAGCCCGG 4846409 37 100.0 39 ..................................... TCTCGGGCGGACCCCCGCCCGGGAAGGAGCATTCACATG 4846333 37 100.0 36 ..................................... TGGGACGGGCTGGCCGCCAAGGTGATGCCGTCTCCG 4846260 37 100.0 39 ..................................... TTCATCACCGGAGAGCCACAGGAGGACCTGGAGATCCCG 4846184 37 100.0 36 ..................................... CGTCGAGCTTCCCGAGCACGTGCGGCAGGTCCGGCA 4846111 37 100.0 39 ..................................... CCCGGGGACCGCGCTGAGACGTCCTCTAGCGGGCCGTGG 4846035 37 100.0 35 ..................................... CGGCGACTCGCCGGCACGTGTCCTCGCCCGCGCTG 4845963 37 100.0 40 ..................................... GGAACAATCACAGACTTTGAAAGGGGACAAGAATGACCCT 4845886 37 100.0 34 ..................................... GTGTTGTAGCCGTTCTCGCACGCGCCGGGACAGG 4845815 37 100.0 39 ..................................... CCCTGTCCAGTGCATATACAGACGCGGCATCCTACGGCG 4845739 37 100.0 38 ..................................... GACGCGTCGTTCGGGCCCAGCCTCCAGGTGTTCCAGGC 4845664 37 100.0 37 ..................................... TTTCCGCACTGCCGTAGACGGCCAGCTCGATGCCATG 4845590 37 100.0 36 ..................................... TCATTCGCAAGGAGTCGAAGAACTCCAAGAAGAAGA 4845517 37 100.0 34 ..................................... GTCGAGACCACCAAGGCACTGCGCGCCCTCGCCG 4845446 37 100.0 35 ..................................... TGCATCAGCCACCACAGCAGCGCCACGTCGCCCGC 4845374 37 100.0 39 ..................................... GACTGCTCGAGCCTGATGCAGTACGGCTGGTATCAGGCG 4845298 37 100.0 38 ..................................... CTCGCGCAGCACATGCACGCGCTGCTGGATGACCCGGC 4845223 37 100.0 40 ..................................... CTCCGGATTCCGCCGGACGGTCTCCCGCCCGCGGAGGCCA 4845146 37 100.0 40 ..................................... GCGCCAATGGTCGCCGCGATGCCCAGCCACAGGCCCACGT 4845069 37 97.3 37 .......T............................. CACTCCGGCCTCTCCGAGCTGCAGGCCGACGTGGCGG 4844995 37 100.0 39 ..................................... TCTGGGGACAACAGGGATCAGCGCGGCTACCTTGCATGG 4844919 37 100.0 39 ..................................... CGCATCTGCGGGTTCGACGAGGCCGTGGCCTGCCAGCTC 4844843 37 97.3 36 .....A............................... CGCGTGGGTGTCCAGTCTCACGAAGAGAACAACTAT 4844770 37 100.0 35 ..................................... CGTGAGACGGCCCCCGCAGGGGTGGGGCCGCCCGG 4844698 37 100.0 36 ..................................... GCCTGCGTGCTGTTCAGCGTGTGGGAGTAGTCCGCC 4844625 37 100.0 38 ..................................... CGTGTCGGGTCCATCGCGCCGCTGGCGGGAATGGACCC 4844550 37 100.0 38 ..................................... CGTGTCGGGTCCATCGCGCCGCTGGCGGGAATGGACCC 4844475 37 100.0 35 ..................................... CAAAGGCCAGCGTTGTGCCCGAGAGACAGGGCGAG 4844403 37 100.0 38 ..................................... CGTGTCGGGTCCATCGCGCCGCTGGCGGGAATGGACCC 4844328 37 100.0 35 ..................................... CAAAGGCCAGCGTTGTGCCCGAGAGACAGGGCGAG 4844256 37 100.0 36 ..................................... AGGTAGGTGCGCTGCACTGCGACCGGCCCCGCATAC 4844183 37 100.0 39 ..................................... GCTTTCGGTCACGTGACGTCCACCTCCTGGCCCTCGGAG 4844107 37 100.0 38 ..................................... ACCATGGCCCGCAAGAACCGTGCTCCGCGCGCTCCGCA 4844032 37 100.0 37 ..................................... CGGCTGCTCGTCGAGTCCTGGTGCTGGTGCTCCCGGC 4843958 37 100.0 40 ..................................... ATCTTGAATATCGCGCATGCGGTTAAGGGCCTGCTTGTGA 4843881 37 100.0 36 ..................................... GGTCCTGTAGCCAATCGGCGGCAGCGGCCTCGGCCG 4843808 37 97.3 38 ....................T................ TCCAACATCCGGAGTTCATCGGCGAGGGGCGCGTACAG 4843733 37 100.0 39 ..................................... ACATCCCGCCTGGCGAGCGGAGCGCAACGGCCTACGGTG 4843657 37 94.6 37 ............T...C.................... TGGACATGCTGTCCAGTGGTCCCTTGGACCTTGTTTA 4843583 37 94.6 38 ................C..A................. TCAATCGCGGCAAGGTGGCCCGTGACGTCCGTCCGGTC 4843508 37 94.6 34 .........T......C.................... CTCTGGCGCAGCCTCGCTGCGCGTATGTCGGACA 4843437 37 94.6 36 ................C.....A.............. CAGTGCTTCGTAACGCGGACGATCACCGGGGCCGCG 4843364 37 94.6 40 ................CT................... CAGCCGCGCCCCCGGTGAGGCGTTGACCGGCAGCCCAGTA 4843287 37 94.6 37 ................GT................... GCCTACACCGCGAAGCTCGAGCAGGCCCGCACCGCGA 4843213 37 94.6 39 ......G.....G........................ ACGCTCCGTGAGCACCTGCTGAACATGCGGTTCTGGCAC 4843137 37 94.6 38 ...........T....C.................... CCACACATGGGACACGTGGTGCTGGCGTCCAAGCCGGG 4843062 37 89.2 0 ............T...C......AT............ | ========== ====== ====== ====== ===================================== ======================================== ================== 53 37 98.8 37 GTGGCGCCCGCCCTCATCGGCGGGCGAGGATCGCAAC # Left flank : TGGTCCCCTCCGTCCAAGCCCGCATCCTCGCACGTCATCTACGTGAGGAACTGCCCGCCTACATGCCCTGGATGGCGTAGTGGAACTTCTCCTCACCTACGACGTCAGCACCATCACCCCGGAAGGCAAGAACCGCCTGCGTCGCGTTGCGAAGCTCTGCGAGGGCTACGGCATGCGAGTGCAGAAGTCCGTCTTCGAGATCGTCTGCACCGAACCCGAGCTGCTCCTGCTGATCGACAAGGTGCAGCGGATCATCGACCACGACGAGGACAGCATCCGCATCTACAAGGTGCCCAAAGGTTCCTTCCGAAGCGTCCGCGTCTTCGGTACGGCGAAGCCGTTGCCTCACGACGACGCCCTAATCCTGTAGTTCGGAACCCCAAGCGCTCATCCCTGACTGGGGATGTTCCGAAGTAGATATGCCAGGTTTCCTGTCCGCTTGCCCGAATCAAATTTGTAGAACTTTGACTGCAGAGCGTAGTAATAGCAGTTCATCCAGC # Right flank : AGGAGAGTCGGGACACCCAGCGTTATCGGTCGTCGTGGCCCCTGATTGTGGGCCCTGGATTGGGCGCCCCGGACGGACGAGACGTTCAAGTGTCCGGTTAGGCCGGGCGTAGATGGTTCTTGTTGCCGCTGTGTTGGGCGATGGTTAGGTCGGCGATCACGGCTCGGAGGCGAGCGATCTCCTGGTTGGCGGTATCCAACTGAGCGTCCGTGGCGGGTGGCTCAGCCTGAGAGCGGGCGGTGCTCCGTATCTTGTTCAGCGCTGTCAGAGCGGTTTCGTCGGCGTTGGGCAGGCTGTGGAGGTACTTCTCTGTTGTCGCGAGCTTGAGGTGACCCAGGCGTTCCTTGACGACCTGGAGGTCGGCGCCGCCGGCGAGGAGCCATGAGGCATGAGCGTGGCGTAGGTCATGGATGCGGGGCGACCAGTCGAGTCCGGCTGCGTCTCGAGCTGGATACCAGCAGTACTTGCGGAACCAGTTGGCCGGGATGTGAGGGTCGGTG # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGCCCGCCCTCATCGGCGGGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-17.20,-16.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [21-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 2 4856227-4854703 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP041244.1 Actinomadura sp. WMMA1423 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 4856226 37 100.0 39 ..................................... TACAACGCGCGGACGGGCGGGACCCGGTACACCACGGGG 4856150 37 100.0 37 ..................................... TGCCTCGCCGTCACCGGCCACACCGCGAACAACCTCG 4856076 37 100.0 39 ..................................... GGGTAGTCCTGGTTCGCCCGGCCGCCCGCCTGGTCGGCG 4856000 37 100.0 35 ..................................... ACGTCGTAGATCGGGGCGCCCATGGGGCTCCTTCC 4855928 37 100.0 36 ..................................... CTTCGGTCGATCCCGAAGACGCATGTGGCGTTCGTG 4855855 37 100.0 35 ..................................... ATCGCCGTGTGGACACTTCGTGGACACATTCCCCG 4855783 37 100.0 38 ..................................... CAGTAGATCGACCCGGCGAGGCCGGTCACGGACATGAC 4855708 37 100.0 38 ..................................... CAGTAGATCGACCCGGCGAGGCCGGTCACGGACATGAC 4855633 37 100.0 37 ..................................... TCGATGGGCGCCAGCACGGCATCCATCAGCCCCCGGA 4855559 37 100.0 38 ..................................... GCCGACGCGAACCCGGTGGCCGACGTCCAGTTCGGGTG 4855484 37 100.0 39 ..................................... ACCCGGACACGCCGACTCACCCCGATGATCGTCACCCAT 4855408 37 100.0 37 ..................................... CCGCAAGGGTCCGGATACGCGGACCCAAACAACCGCT 4855334 37 100.0 38 ..................................... CGGAACGTGAACCTCGCCATGGCCGCGAACGCCACGCT 4855259 37 100.0 34 ..................................... CATCGACATTCAGCGCCATGGGCCACCGGCCCCG 4855188 37 100.0 38 ..................................... TCCAAGAGCGTGTTCTTCCGCTCGGCGAAGATGTACTC 4855113 37 91.9 39 .................T.........A........T CCCTTAACGGTGCGCTCGAACTTCGTCAGGTTCGCCGAC 4855037 37 97.3 38 .......................A............. ACCAGAGTCCCGCCGGCGTGGAACTCCATGGGCAGTGG 4854962 37 97.3 35 .......................A............. GGTCAGGGTCAGGGCCGTGCACGCGAGCTGCCGGA C [4854949] 4854889 37 94.6 38 ..................A....A............. TATGGGGAACCGGACCGGCCGGCGTTGCGGGTATCCAG 4854814 37 94.6 37 ...........G...................T..... GACCATGTACGCGGGGCCTGCCACAGCCTGGACTGTA 4854740 36 83.8 0 ...C...T....T............-...C......G | G,G [4854705,4854710] ========== ====== ====== ====== ===================================== ======================================= ================== 21 37 98.1 37 GTGGCGCCCGCCCTCACCGGCGGGCGAGGATCGCAAC # Left flank : TACGCCCGCCAGGACCGAAACCACGGAGAGTCATCCATGCAGCCCATGAAGTACAGCGACCTGGCCGACCTGCCCACCGTCGTCGACATAACCACCGCCGCCCGGGCCCTCGGCCTCTCCCGCTCCTACGCCTACTACCTCGCCAAGCACGGCAAGTTCCCCTGCAAAGTCATCCGCATCGGCACCTGCTACCGAGTCCCCGCTTCTGCTCTCTGCGCATTGCTGAGCCCAGACGAGGCGCCTGCGGTGACCACCTAGGACCTTTAGGGTGAGGGGCGAGGGAGCACTTGCTGAACTCGCCCTCACCAGCCTGAGCCAAGGCCGTCTGGACGCGCCGGCGGCGTTGAATCTGGCACAGTCCTGCTGTTTCTTCGGAACCCGAAGCGAGCAAGAGATCACCGGGGGGTTCCGAAGTACTTTTGAGCTATTTCCTGCCGTTTTGTGCACACTACCTTAGTGTGTATTTGATTACAGTTGGTCATGATGGCACTTCAGGTGCC # Right flank : TTCTGGCGGTGACAGGTAGCAAACTGGCTCCGGAACACAACTCGTGAGTAAGGTCTCGCAGTTCGGGAGAAGTGGCCGCATTGGGACGCTGGTCCTGCGAGTTGTGTGGAATGCGCACGATGCGAAGCCCTCTGTCGTACGGTGCTTTCCTGTCACGGGGTGACGGAGAGCGGGGCGCAAGGTGACGGGGGAGTTGTGGGCGCATAGCGTCAACCCTTCTGGGAGACGTCATGGGCTTGTAGATCATTTGAAGGGCACAGCCTATTTGGCTGCTGAGTTCGCCTCCGTGTTCGGAGCTGGCGAGTTGGCTGGCGGTTTGGGGCTGCTGCATGACGTCGGTAAGGGAGCCTGTCTTTGGCAGGACGGCTTGCTGCGTGCGGAGGCGGGCGGCGGGCGTGTTGTCGATGCCGGAGGGGAAAGCGTTGATCACAAGATGGCGGGCGCCTGGCTGGCGGTGCGGAAGGCGCAACTAGGGCCCTATGCACTGGCAGTGTTGGGGC # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGCCCGCCCTCACCGGCGGGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-17.20,-16.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 3 4864197-4862672 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP041244.1 Actinomadura sp. WMMA1423 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 4864196 37 100.0 44 ..................................... CTCGTTCACAGTGTGCTCCGCCAGGTCGCCGACGCCGCGGCCGT 4864115 37 100.0 32 ..................................... TCGATCCGGCGGCGGACCCGCTCCACCGACGC 4864046 37 100.0 39 ..................................... CTCAGCCACGGGGACCGACCTTCGGGCGGCCGAACGAGG 4863970 37 100.0 37 ..................................... CAAGGATGACGGGCCAGGGCACGGCGCCGGTGGGGCG 4863896 37 100.0 37 ..................................... GACTTCACTGCGGCGGTTCAGGTCGTCCCGGTCATCA 4863822 37 100.0 35 ..................................... ACCATCTCCACGCCCGGAGCCGACGCACGGCCGGG 4863750 37 100.0 38 ..................................... GACCTGTGCGCCGGCGGCCGACTGGTCTACCGCCAAGA 4863675 37 100.0 33 ..................................... ATCGCTTCGGCCGGTATCGGAGCTGCTGCAGGC 4863605 37 100.0 36 ..................................... AGCCGGATCCCCGCGATGCCGACACCCGAGGCCGCC 4863532 37 100.0 35 ..................................... AGGTACAGGGCCTCGTGTGGCTCCAACTCGGCCAG 4863460 37 97.3 34 ......T.............................. ATCACCGGCACCGACCTGGACGACGTCAGCGGCG 4863389 37 97.3 37 .......................T............. TTGTAGTGCATGGCAACGCAGTAGTCGCCGTCCACGG 4863315 37 97.3 40 ............T........................ AGTGAGGACGCGTGGGAGGATGCTCCTCCCGTGCGGCTGC 4863238 36 91.9 38 ......-.......G..C................... CTGCCCATGTGGGTTCAGCGCAGCAAGCGACTCCCCAA 4863164 37 94.6 39 ..............G..C................... GAGCCTAACGGGGGAACCACAGACTCCCCTTGATTGGAT 4863088 37 97.3 39 .................C................... CCGGAGGTCCGGGAGGACACGGGCGGGTACCTGGTCCCC 4863012 37 91.9 40 ...............G.C......T............ GACTACCACGCGATGTACGCCACGGAGCCGACCGCCTGGA 4862935 37 89.2 40 ..............TG.C......T............ GACTACCACGCGATGTACGCCACGGAGCCGACCGCCTGGA 4862858 37 89.2 39 ..............TG.C......T............ ACCGGCAACCCGTGCGTCATCCCGCGCCGCACGTTCACC 4862782 37 97.3 37 .................C................... GCGGTGACGGTGCCGAAGTAGATGAAGTAGCCGCTGG 4862708 37 89.2 0 ........T...T...TC................... | ========== ====== ====== ====== ===================================== ============================================ ================== 21 37 96.8 38 GTGGCGCCCGCCCTCACGGGCGGGCGAGGATCGCAAC # Left flank : CACAGTCTCGCCCGGCTCCCTGCCCGTCCCGCGGACAGTCCTGGATCGGTTGCCCAGCCGGCACTCTCAGCCATGCTCGCCATGCGGTTGGCTGGCCGATTTTCGGACTCGCAGGCTCCGTTGCCTGTCGCCCTCGACGCGATGGGTTTCTAGGCGCGACCACAGCCCTTGCCGAGGTTGTCGACGTAAGAGCTGAGGCGGAGGATGGTCGCTTCTGGCGAGTGTTAAGGCGCTGAACTAACGTCGTACGGTCTGCGATGGTTGAGGCGCTAGACCGTGAACTCTCCTGCGCTCCTCGTCGGGACCCTGCGCCCTCTGCGTCTTCGATCACAAGACACACCTGCAGCTGTGCATCGCCTAGCTTCGCGGTACTTCGGAACCATGAGTGAGCACAGAATGCCAAGGTGGTTCCGAAGAACCTATGGGAGCCTTTGGGGTATTCGCGTAAGTCCATCTCGTAGCTGATTCACTACGGTGAGAAGTAACAGCTGTTCAGATGG # Right flank : AGGGTGCTTGTCGGGCTGAGGAAGGCAGCCCCACGAGACAGGCGACGTGGTTACGCTCCATGTCCTAGAAAGGTGACAGTCGGTGTTCGAGGACGCGGGGTGGGGTGTTGATCAGTCCGTATGTGCGCCGGCTGCGGCTTGCGGCGGAGTTGCGCGAGCTGCGGGAGGGGGCTGGCGTTTCGGCGCAGGAGCTGGCCAAGCGGTCGGGCGTGTACCGGCAGATGATCAGCAAGCTGGAGAACGCGCACGTCGCACCGAATCAGGAGGATGTTCAGCGGCTGCTGGACGTCCTTGGTGCCGAAGGTGACAAGTGGACGCAACTCGTGCAGATCACTGCGGAGGCGGCGTCGCATGGCTGGTGGGAGTCGTCGGGCATCGGTGAGCGCCAGGCCAGGTTTGCCAACCTCGAGGCCGGTGCGAGTGTCATCCGTGAGTACCAGCAGAACTTGATTCCGGGGCTGCTGCAGACGGAGGAGTTCATCGCTACGCGCTTGGCCAAC # Questionable array : NO Score: 2.84 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.74, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGCCCGCCCTCACGGGCGGGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-20.20,-19.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA //