Array 1 90646-86667 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPTX01000003.1 Eggerthella lenta strain MR1 #12 NODE_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 90645 33 100.0 33 ................................. TTGTCAAGCTGATAGGCAACCTGCACGGGCTGA 90579 33 100.0 34 ................................. GCTAAAGAAGCCGCCTATATTGTCCGTGAGGTTG 90512 33 100.0 35 ................................. AAAGACAGCTTGAAGAAACTCCCCATGAAGGTATC 90444 33 100.0 34 ................................. CTGAACGACTACGGGCTGCAAGACCTCGTGGGGC 90377 33 100.0 33 ................................. CCCTTTATTACAGGTACATAAACACCGACCGCG 90311 33 100.0 33 ................................. TACTCCGAAACGGAGTACATCCATGACACGGAG 90245 33 100.0 33 ................................. CGACACCTGCGCCTGAGTGTTTCCGATGGTAAG 90179 33 100.0 33 ................................. ACGATCAGCCCGCCGTCTATCCGATGGCGCAGC 90113 33 100.0 33 ................................. CAGATGTCGCCGTTCATGGGCGCTTCAAGATCG 90047 33 100.0 33 ................................. CTCATAGTATGCGGGGCGCTGATGCGCGCCCCG 89981 33 100.0 33 ................................. CTCATTGGTGATCTCAATTCCAACCGGCACGAA 89915 33 100.0 34 ................................. TCCAGTATACAGAGCGTTGCGCAAGTTGTCCTGG 89848 33 100.0 33 ................................. CCGTGCTGCGCCCGCCCAATTCCATGAAAAGGC 89782 33 100.0 34 ................................. CAAAACCGAGAGGATGCTCATATCCGACGGCCGC 89715 33 100.0 33 ................................. AGGCCCTTAAAGCCCGCAATTACGACCTGTTGA 89649 33 100.0 34 ................................. ACCTTGTAAAAGCCGTCGATGCGCGCGTACTCGG 89582 33 100.0 35 ................................. TCATATTCATAGATGTTCTCTGGCAGTCCAGGGAG 89514 33 100.0 33 ................................. CACATAGTCACGCCATAATCATCGCGCGAGAGC 89448 33 100.0 33 ................................. TACTTAGTGTGTTATATGCGCCGCAAATACTAT 89382 33 100.0 34 ................................. GGATACGCTCTCATGCATGCATACCCTGTGGCCG 89315 33 100.0 35 ................................. TTGTTGTCGCCGTTCCTCGCGGCAGCCACCTCGGC 89247 33 100.0 33 ................................. CGATGCCGACCACGACGATAGCGCCCATGATGG 89181 33 100.0 32 ................................. GGGCTGACGACCCAAAGAAAAGTCAGCGCCGC 89116 33 100.0 34 ................................. TACTATGTTTACAGTACCGAGGAGCTGAGGCCGT 89049 33 100.0 37 ................................. TTGCCGACGTGCTGGACGGCTACAACCGCACCCACGA 88979 33 100.0 33 ................................. AGCCTCTTTTCGCTCGTCGCGTTCGTCGAGCTG 88913 33 100.0 33 ................................. TAAACGAACTTGAACAGACGCATTTTGATAACC 88847 33 100.0 32 ................................. GAGTTCGTTACCGACACGATCGGCCTCATCGG 88782 33 100.0 34 ................................. GAGCTCGCCTGTGTACCCGTCGTTGGTGACGATG 88715 33 100.0 34 ................................. ACGTTGCCCGGATCGAGCTTGAGCGCGCGCTCGA 88648 33 100.0 35 ................................. TCGACGACGGCCCTCACGTCGTCGATGGTGCGGCC 88580 33 100.0 34 ................................. TATCACATGGAGCGGACGAGGTTCTCCGCGCGAG 88513 33 100.0 34 ................................. ATCTTGGGCGTGCCGGGAGCGGGCAAGAGCTTCA 88446 33 100.0 34 ................................. ATGGCGAGTACTTGGACGTAGTTGACGGTCGCCG 88379 33 100.0 36 ................................. ACGTATACGGGCTTCGCGCCGGTGCCGTTGACGTCC 88310 33 100.0 33 ................................. GACAACGCGATGGCCAAGGTATCGACCATCGCG 88244 33 100.0 33 ................................. GATCCGCTACGACAACGTAGGGGATCAGGCCGA 88178 33 100.0 36 ................................. AATGAATCGATCAAGCGCGCCAACGGCGAACTCACC 88109 33 100.0 34 ................................. GAAACCGTGCGCGACGGCGGAAGCAAGCTGGACG 88042 33 100.0 33 ................................. GGAGAAACATATAAAAAGGACGGTGTAATCTCG 87976 33 100.0 35 ................................. CAGTTGATGTCTTTTCGCAGGTCGATGGCGCACGC 87908 33 100.0 34 ................................. AAGCCGACGAATACGCCGGCGAACGCCATTCAGC 87841 33 100.0 34 ................................. AGGCCCTGTCGGCCCGGTCGGCCCTGTCGGCCCC 87774 33 100.0 34 ................................. ATGTCGGCCTTGGTGAACTCGGACAGGTCGAAGC 87707 33 100.0 33 ................................. ATGCTACTAGACGATTTTTTTGTTCCGAAATTG 87641 33 100.0 32 ................................. GGGCTGACGACCCAAAGAAAAGTCAGCGCCGC 87576 33 100.0 34 ................................. TACTATGTTTACAGTACCGAGGAGCTGAGGCCGT 87509 33 100.0 33 ................................. AGCCTCTTTTCGCTCGTCGCGTTCGTCGAGCTG 87443 33 100.0 33 ................................. TAAACGAACTTGAACAGACGCATTTTGATAACC 87377 33 100.0 33 ................................. TGGCAGCCTCTCGCAGGGTCTCGGCTGGCTCAA 87311 33 100.0 37 ................................. GAAAAGCTGCACCGGCGTGCCGACCGTGATGCCGTTA 87241 33 100.0 36 ................................. GGCACTGACGTGAACGAAAGCGTCAAGGCTGCAAAC 87172 33 100.0 33 ................................. CCCACCGCGATCACCCAGAACGTCGAGTACCTG 87106 33 97.0 33 .............C................... ATGTCGGGGAAAAGGCGCGAACCCATGTAGGCG 87040 33 100.0 38 ................................. CAGGTAGGCGTTGACGGCCTTGTCGTTGGCCTCGGCCA 86969 33 97.0 33 ..T.............................. CTACGATGCCATGGCGTCCTATGCATTCACGGG 86903 33 97.0 34 ......T.......................... GAGGAATATACGCGATTCGTTGAAACGGATGTAG 86836 33 90.9 36 A.....T...................G...... GGCACCGCGGTGTACTCCGTGCTCGAGAACGCGCGG 86767 32 93.9 34 .................-..............C TGTTCGGGTTGGCTGGCAAGCTGAACGCTGACAC 86701 33 75.8 0 .....GTT.A..T.....C.C..........G. | C,T [86685,86697] ========== ====== ====== ====== ================================= ====================================== ================== 60 33 99.2 34 GTCACTCCCCGCATGGGGAGTGCGGGTTGAAAT # Left flank : GCGCGGCGATCTAGACGGCTACCCGCCGTTTCTATGGAAGTGAGATGGTTGGCATGCTGACAGTGATTACCTACGACGTGAATACCGAGGATCCGGCAGGCCGACGTCGCTTGCGAAAAGTGGCGCGACATTGCGTCAATTACGGTCAGCGTGTCCAGAACTCAGTGTTCGAATGCGTTGCCGATGCTGCGACGATGGTTCGTATCAAGAGCGAGCTCGTCGAGCTGATCGATCCGGAGAAAGATAGTTTGCGATTCTACAGTCTTGGAAGCAAATATGAGACGAAGATTGAGCATGTAGGTGCGAAGCCAACGTACGAAGCTGAAGGGTTCTTGGCATTGTAGGACCATGGTGCGAGCACGAAGCTCGCATATGACATACGTGAGGTTCGCACCAAATAGTGTGACATAAAGATGCCTGACGCGCTTGTTGCGTGTACCTTGTTTGTCTATTGGCGCTATATGTTGATCGAGGCAGTAAATTTTGCGCATAATATTGCG # Right flank : CGCGCGCAGCTGTCGTGGTACGGCCGAGGCGTGGTCGGTCGTACCACTCGCGGGCGCGCGGGTAGAAGCAGGGTATCCGGGTTGAAATCGAGCAGCGTTTCGGCAGGTTCTGTCGCTCCCTAACGAAGGGGCGACCGATCCTTGCCGTCGCTTCCTATCGAGAACGCGGATTGATTCGCTGATTCCGAGTTTTGCTCGTCGGACGTCTGCGCCGAGTTGCGAAAGGCGCAGACGTCCTTCGGATCGCTACTCCACCACCAAATCAACGAACTCAAACGTCGTGCAGTCAACCAGGCCGCGGTTCGTCAGGCGCAGTTCGGGCAGGCATGCTAGCGGGATCAGGGCCATCGTCATGAACGGCGACGGCATGGTGCAGCCGATCTCGGCCCATGCGCCCTCCAAAGCATGTACCTTCTCGCTCATCGTTACGGCGTCGAGCGAGTCCATCAAACCGGCGATAGGAAGCTCCACCAACCCCAGGATCTCCCCGTCGGCGACCA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCCCGCATGGGGAGTGCGGGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCACTCCCCGCATGGGGAGTGCGGGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.20,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //