Array 1 1042460-1039671 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJVUJ010000001.1 Acinetobacter sp. Marseille-P8610, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1042459 28 100.0 32 ............................ AAGCAATTCCACAACCCTGAATAGACTTAATT 1042399 28 100.0 32 ............................ AATTAAACAAGCAATCATTATTGACTGCAATG 1042339 28 100.0 32 ............................ AACAGTTGAAGGCAATAAATCAGGATCGTTCA 1042279 28 100.0 32 ............................ TCCTCATGGTATTGTTGTTTCTGTAGTTGGTG 1042219 28 100.0 32 ............................ ATCGACTTGGCTTAATCAAGAAGGCTGGGAAG 1042159 28 100.0 32 ............................ ATCCCTTTTTGATATATGGGTGACTACTGACA 1042099 28 100.0 32 ............................ AATCCAGTCGAAGCTGCTCGTGCATGGGCAAA 1042039 28 100.0 32 ............................ ATTAATAGTACCAAGCTGTAACCCTATATTCT 1041979 28 100.0 32 ............................ AATCCGTATTGCAGAAGCTTATGGTGAGAAGC 1041919 28 100.0 32 ............................ TTATATTCTCAATAGTAAATCATCTTTATAAA 1041859 28 100.0 32 ............................ TGAAGCAGCAAAAGCATCACTTGGATTTATGA 1041799 28 100.0 32 ............................ TCTGTAATCCTATAGCGGCTAAGTCAGCATCA 1041739 28 100.0 32 ............................ TGCGTGAGGAACTTGATGCCATTCCACGCGAT 1041679 28 100.0 32 ............................ TTGGCGGCATCACACCAGTAGCTGACCAGTAC 1041619 28 100.0 32 ............................ CGTTAGAGGATTACGAAACTCTTTGTAATCTT 1041559 28 100.0 32 ............................ TACACGGGGCTTAAATCGCAAACCAGCGCCTT 1041499 28 100.0 32 ............................ TTGAGGCTTTCGCGGAAAGAGCAGGGACAACA 1041439 28 100.0 32 ............................ TTTGGGACATACAATCATCGCAGTGTCAGCGC 1041379 28 100.0 32 ............................ TTATCTGCGCTGTCTTGCATCAACAAATAACT 1041319 28 100.0 33 ............................ TTTGGGTGAAGCCGCTATTCAAGCGGACTTTCA 1041258 28 100.0 32 ............................ TCAATTTCCCCGTCTTGGGTTTCGAGATTGGT 1041198 28 100.0 32 ............................ TTGAACTCATTGATTTAAGTGAAAAAGTGCAA 1041138 28 100.0 32 ............................ GAACCATCGCTGAAGCCAAGCGAAACATAAAC 1041078 28 100.0 32 ............................ TACCCAAGGCACAATTGGCTTGGTTTTCATAA 1041018 28 100.0 32 ............................ AAACATTGGAATAATGTATACAGCACCTTGTT 1040958 28 100.0 32 ............................ ATACCAGTGAGGCTTGCCATCGATGTACTTAG 1040898 28 100.0 32 ............................ TGATGGCTGCATTTCAACTGTTCCAAGATCGT 1040838 28 100.0 32 ............................ ATGACAGAGGAGCAACGACCATCATGATTTAT 1040778 28 100.0 32 ............................ TTTGACGATTTCACCGCGTTTAACAACGAGTT 1040718 28 100.0 32 ............................ TTTTACGTTTGTGAAGAAATCAACCAATTCAC 1040658 28 100.0 32 ............................ TCGCATAATTTTTAATAATGCAAAGGCTTAGG 1040598 28 100.0 33 ............................ AAACCAGCATTTCACAATATGCCTTGGTTGCTT 1040537 28 100.0 32 ............................ CTGCTATTTGGAGTGTGTGAGATGAGAAATAG 1040477 28 100.0 32 ............................ GATAAAGCCGGCAGCCCTCAGTGCCAGTCCGG 1040417 28 100.0 32 ............................ GCCCCACTAATCAGACCTTGTTCGCTTGACTG 1040357 28 100.0 32 ............................ AGTGGAGTTAAGTGATGAAAAGGCAGATAGCT 1040297 28 100.0 32 ............................ ATTTCAGCAATGCATCACATGCCTGCCGATGA 1040237 28 100.0 32 ............................ AGTATTGCCGCAACTCGGGCATTTGACTTTAT 1040177 28 96.4 32 ...........A................ TTAGGCCGCTACCCAATTCAGCAGTCTTTCAA 1040117 28 100.0 32 ............................ ATGCTTTACTATGTTTTATAAGATTTGGAGTT 1040057 28 100.0 32 ............................ AATTAACAGATGAGCGCATGTCAGCGCAGTAT 1039997 28 100.0 32 ............................ ATCCCTTTAGGTTGTTAAGGTGTAGTTGGATA 1039937 28 100.0 32 ............................ ATCTGGTCTTATTACAAGTTGACTATCGATGG 1039877 28 100.0 32 ............................ GCGCAATCGATCTAAAACAGGTGGGCTATTCC 1039817 28 100.0 32 ............................ TGTCCCTTTCCTCCAATGGTAGTGGTTGAGTA 1039757 28 100.0 32 ............................ AGCCGACCCTGCATGGCCTGAAGAACCACTTC 1039697 27 85.7 0 ....................CA..-..T | ========== ====== ====== ====== ============================ ================================= ================== 47 28 99.6 32 GTTCATGACGGCATACGTCATTTAGAAA # Left flank : GTAAATGCGATTTGTCTTTGTAGATTACTTATCTCAATCGTATCGGCATCGACAATAGTAATCTTGCCCACACCTGCACGTGCCAACAGTTCAGCACTGGTACAACCAATCCCGCCTGCTCCGATGATCAGTACATTGGCGAGTTTGAGTTTTTCTTGTGCTTCGATATCCCAACCATCTAATAAAATCTGACGACTATAGAGATGCATTTCCTCATTACTTAGCTCAAATTCGTTTTCTAAATGGTCTGACACGTGACTTGCTTCTTTATCATCAAGGGTAATGCTGATTTTAAGTCGATGTAGGATTTGAGGAAAGTAATAAATTGGAACGAACATTGTTTTCTTTTGACAAAAAGCTATTTTTACCCCAATATTTTTCTTACTCTTTAACAGCTTAATAAAATCAATAAGTTACTATATCAGTTAAAAACTTTGGGTATTTCTGCCTTTTTGGATATAACTTGATGTTTTAGCTTATATTATTTTCATTATTTTATA # Right flank : TAATGTTCTAACTGGAGATAAGATTTAAACTGAAAACCACGATGTATCAAAGCGTTTAAAGAAATAGGAAATCGAATTCTGGCAGTTTGTAATACGTGAAGAACCCATGTTTTTTCAGCTAAAAATTCAAATAAGATTTTATCATCACATATCCTAGGGCCAGTAAAGATATCAGTCTGATAAGCCAGCCCTATCCATAATGACTCCAACAATATATTTTTATCCAGATCGACTAAGGCCAAAGTTAAAGTTTCTTCAAAGATACAATCATGGCTAAGGAAAAGAAGATAGCAGTGAGAATATACACAAACCACACCTTCTAACACTTTACCCTCAACCATAACCCCTGTGTTTTCCCCCTTAATCATCACTTCAGACTGAGGCAAACACTTATCTGTCATATCTTGGATCAATGCTAAACCAATATAATCAGCCACATACATATTCAACTTTGCCTAATAAAATGATTACCGATTATATTTCCATCTATTACTTTGACT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGACGGCATACGTCATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: R [matched GTTCATGACGGCATACGTCATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.50,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 348759-352689 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJVUJ010000004.1 Acinetobacter sp. Marseille-P8610, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 348759 29 96.6 31 ............................A TAACCAAGCTGCTCAAACAAATCGCGTACTT 348819 29 96.6 33 ............................C TGACCTTTTGGGGGTAAACCACCGTCAGTTTTT 348881 29 96.6 32 ............................A ATAACCCCAATGAGAATATGACAGGTTGGTCT 348942 29 96.6 31 ............................G CTAGTTCGAGTTATATCTATTAAGTGTTCTT 349002 29 96.6 31 ............................A TTCTTGATACTGGCTTTGCTTTGCGCAGTTT 349062 29 100.0 31 ............................. CAATCGCTTGGCGCAAGAAATCTTGGCTTGC 349122 29 96.6 31 ............................A AGCATCAAGTTATTGATTGCGTTGATCACTA 349182 29 100.0 31 ............................. GCTTCAATGCCCATGCTTGAGCTTCTGCTTG 349242 29 100.0 31 ............................. ACGATTACTCCATGAGCTGATTGAAATGATT 349302 29 96.6 31 ............................A TCACTCAAATAAGCAGAAGATGAAGAAGAAA 349362 29 100.0 31 ............................. AAATGTCGTATCTTTGCCTAAATTACCAGGA 349422 29 100.0 31 ............................. ATGTTTCAGGCTAGTTGTAAAACTTAGATAT 349482 29 96.6 31 ............................G TCGAATGAGTCTTGAATCCGTTGTGATAAAT 349542 29 96.6 31 ............................G CAAAGATGCCGCAGCAAATCAATAAAACTTT 349602 29 100.0 31 ............................. TGTTTTGTTGGTTTAACTGGTTCGATTGATG 349662 29 96.6 31 ............................A AAAGGTGGTGGGTTCTTCTTGCCACGTCCTT 349722 29 96.6 31 ............................A GAAGCCTTCGTTTATGGTGATTTGAAGCCAG 349782 29 100.0 31 ............................. GCCAAAATAACTGCAATATCGGGTGATGACA 349842 29 100.0 31 ............................. AAAACCATTTCAGCTGTTAAAGCCATGGATG 349902 29 96.6 31 ............................A GCCACATGCTTCCGAAACATCTTCTTGTGTA 349962 29 100.0 31 ............................. TTCTTCACATCAGCACAAGATGTCTATGACT 350022 29 100.0 31 ............................. CATTACCAACTCCAATAATGATGTCATCCAA 350082 29 100.0 31 ............................. TAGCATGGTTCAGATTAAGGTAGTTAATTAC 350142 29 96.6 31 ............................A GTCATCTTCATGCACACAATCTTCGATATTA 350202 29 100.0 31 ............................. ACACCAACTGCCCCTGAGCTTCCATAAATAT 350262 29 96.6 31 ............................A GTCAGGCATTTTGCTGAACATATCGCGGAAT 350322 29 100.0 31 ............................. GTTTTTTTAGAAAGATCTCTGCGCGTTTTGC 350382 29 96.6 31 ............................G TCCATATCATTTTTGACATATCGAAAGACTT 350442 29 100.0 31 ............................. TTCCGATCTACTACGGGGTCGGCAAGTCGCA 350502 29 100.0 31 ............................. TCCGATGTGCTTCTATACAACGAGGCAATTA 350562 29 100.0 31 ............................. AAAAATCCTTTTGGTTTTTCAGGGAGCGCTA 350622 29 100.0 31 ............................. GTTTAACACCCAACCAAACCACATAAGCCTT 350682 29 100.0 31 ............................. TAATCCCCCTCAGCGCTGCAACAACTTGCTT 350742 29 100.0 31 ............................. AAAAATCCTTTTGGTTTTTCAGGGAGCGCTA 350802 29 100.0 31 ............................. GTCTTGCTAACTTTCCCTGAAACAACTACAT 350862 29 100.0 31 ............................. TAGTATCATGTGCAACTGTAGGGAAGTTTGA 350922 29 100.0 31 ............................. GCATCAACTCCAATCGTTCTAAACGCTGAAG 350982 29 96.6 31 ............................A GCTTGAGCCATCGTACTGAATACACTTAAAC 351042 29 96.6 31 ............................A TGCTTTGACCAGTTCGCAGCTGTTGTTGCCC 351102 29 100.0 31 ............................. CACAAGCTTCATATTCCGCATCATCAAAAGT 351162 29 96.6 32 ............................A GTACAACGCTTTCGAAGTTCAGAGGACTTCAC 351223 29 100.0 31 ............................. GATACAAAATCTATATGGGCAGATACTCCTT 351283 29 100.0 31 ............................. CCAACATGTTGAAGGCAGTCCGATCGTGCTC 351343 29 93.1 31 ...........C................A AACTGATGATAAGCATGAATCATTAGATGAT 351403 29 93.1 31 ...........C................G CTTACGTGGACCGATTCCGAAGGTCAAACTT 351463 29 93.1 31 ...........C................G ATTCATAGCACACCTAAGCACTTGCTTTGGG 351523 29 93.1 31 ...........C................A ATATGCGCCACCAATCATAGCGAGGTTTGTC 351583 29 89.7 31 ...........G.......C........A GAATTATCATATGCAGTAGCTCCGTCCTCCA 351643 29 96.6 31 ............................C ATAACCAATTTGTGTTTTAACTCTTTGTTTT 351703 29 96.6 31 ............................G TCGAGACAATCTTTGAACCAAAATACATAGA 351763 29 100.0 31 ............................. TTAAAAAATCTACGTCACGAAGAGTTCTGCC 351823 29 100.0 31 ............................. TACGAGTCATTGCCGACACATTACACGGGGA 351883 29 96.6 31 ............................A GTGAAGCTGATTCTTTTTTTATGCTTCTTCT 351943 29 96.6 31 ............................A TATTACCCCCGCTGCACAGTAATCGGTATCA 352003 29 96.6 31 ............................A TCATAATTCCTTGTGGCAGTTGCGCTTGTAC 352063 29 100.0 31 ............................. TTGCCCCTTTTTTGAAATATTATCTGATTTG 352123 29 100.0 31 ............................. TTAGCACCACTCCAGATCACACAAATTCCAA 352183 29 96.6 31 ............................G CAACAACCGAATCACTGTAGATTTTGTCTCT 352243 29 93.1 31 ...........C................A GCAAAGGTTAATGGCTGAGATCTGTTTTCCC 352303 29 96.6 31 ...........C................. TCGTTATCGTATGTTTTTGCTTGATGCAGCA 352363 29 93.1 31 ...........C................A CATCCAAAAAGACTTCATAGCCCATTGATTT 352423 29 93.1 31 ...........C................A TGCGCAGCACATACGCTTACGCCAAATTAAG 352483 29 89.7 31 ...G.......C................A ATTGGGTGAGCAGTTCGCAAACAAACCAAAA 352543 29 93.1 31 ................A...........A AAGTAAAAGACCCTCAACTCGTGAAGCAGTT 352603 29 86.2 29 ......A.T..C................A AATTGCAAGAAGTTTGATGAGCAGGGGCA 352661 29 82.8 0 ...........C............TTTG. | ========== ====== ====== ====== ============================= ================================= ================== 66 29 97.1 31 GTTCATGGCGGTATACGCCATTTAGAAAT # Left flank : TGGTTGGAATGGGAGGAACTTAAGAACTATGTTCATTTCACTCAACCACGTGAAGTACCTCAAGCTAAAATTACGGGGTACGCTCATTATTTTCGAGTTAATCCAAAAATGAGTTTGGAGCAACGTATTGTTCATCAAGCTCAGCGCCATAATATTTCTTTAGATCAAGCGAGACAGCACTTTAAGCAATATATTGATCAGCCTGTGGTTGAGCCTTATGTGAGTTTGAAAAGCCTAAGTGCAAAACGAGAGGAAAATATAGATAGACCGTATCGCTTATATATTGGTAAATCTATTGCTGATGAGGCAAAAGATGGAACTTTTGGAACTTTTGGGTTAAGTCGTTTCTCAACCGTACCAGAGTTTTAACCCAATTTTTTTTGACTCTTTAACAGCTTAATAAAATCAATGAGTTACAGCAAGTGGTTTTTTGATTGGGTAAAATGCCTAAATCTACATTAACTACTTGTTGTAACTTATATTTTTACTATAATTTTATA # Right flank : TGAGGCAGAGAGTAGATAGGTTAATTAATAAGAACTTATACACTCGCTCTCTTTAATTTTTAACCAAGAAAATATACCCTGAAGTTAATGTAATTATAGTGAATAGTGAAACGTTCATGCGCGGTCTATACCTCATTACCAACGATGATCCAATCCAATTATTATTAGAAAAATTAGATGTGGCTCTAGCAACAGGACAGATTGTGATTCTGCAATACCGTCGTAAGAAAGTGGCAAAAGCAGATCAGCCAAGTGAAGTCGCGCAGATCAAAGTACTTTGTGAAAAGCATCAAGTCCCATTTGTGATTAATGATGATTTGGCACTGGCAGAGCAATTTGGATTAGGGGTACATCTTGGACAGTCCGATGGTGAAATTAGTGATGCGGCCGCACGTTTACCACAAGGTGTAATTATTGGTCGAACTTGCTTAAACTCATTAGAGTTGGCGGAAAAGGCGATTGCTGATGGTGCAACTTATGTGGCCTTTGGTGCGGTTTAT # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGTATACGCCATTTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGTATACGCCATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //