Array 1 899365-901400 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP084704.1 Desulfurispirillum indicum strain A2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 899365 37 100.0 35 ..................................... CATCCTCGCTCCGAAGGAATACAAGAACAGAAAGG 899437 37 100.0 33 ..................................... TCCAGCCACGCGGTAACACGAACCATGGTCGCG 899507 37 100.0 34 ..................................... ATTGATAATGTCTCTCATGGTTCACCCCTTACGC 899578 37 100.0 34 ..................................... TCCACGGCATCGGCGTATCACAGAAAAACGGCCT 899649 37 100.0 34 ..................................... TTCGAGGCGGGCAAAACGCTCGCCCACTTTACCG 899720 37 100.0 34 ..................................... AAATGTACGAACCTTTCGATTTGGCGAAAGCCAT 899791 37 100.0 33 ..................................... GAAATTATAAAGCCCCGTGCTCGTCTGTATGCG 899861 37 100.0 35 ..................................... ATGCTGGTCAATGGCAAACGCGCCAGCCTCCAGCG 899933 37 100.0 35 ..................................... GCGCTCGTTCAAGCGCTGCATAACAATCACGTTTG 900005 37 100.0 35 ..................................... AAAATCCACCAGGTATTGCAGTTCAATGACACCGG 900077 37 100.0 33 ..................................... TCTGACGGTGCCATTTCTCCCGGTGCTGATTTG 900147 37 100.0 36 ..................................... ACCCGTAGTGGACTTGCCCGACTGGATTAAGATCAT 900220 37 100.0 35 ..................................... AATTTTCCTTTATTGACTTGATTGAGGCTTGTGGC 900292 37 100.0 35 ..................................... TTATAACTATCTACAATGCAGACGGGGAGCAGTTC 900364 37 100.0 34 ..................................... AAGTCCAATGCGTACCTAGACCCGGCGAACTTCC 900435 37 100.0 35 ..................................... ACATCAAGGGATGCACCCCGCTGGCGAGAACTCAG 900507 37 100.0 33 ..................................... CAAACTCAAATGTAACGCTCTCAATATATCCAC 900577 37 100.0 34 ..................................... GTAAACTCACGAAAGTTGAGCGCAAGGGCAACAT 900648 37 100.0 35 ..................................... GCTCGTATTGACCACGTAATACTTCATTTCGCCGT 900720 37 100.0 34 ..................................... ATGTTTTCCTCCTTTACCGAAACATCTGTATCAG 900791 37 100.0 35 ..................................... CCAGAACCATATCCAGTTCAAGCAGTGGTGGGAGA 900863 37 100.0 34 ..................................... GTTTCAGGGCTGATTACCACCTGATAAGAAACGC 900934 37 100.0 33 ..................................... TTCCATGGGCTGTGATTGCTGCTGTAGCTCTGG 901004 37 100.0 35 ..................................... TTCTGGTCGAGTTGTGTGATTTTCCGGTTGTGTTC 901076 37 100.0 34 ..................................... GCCAACATCGCCGTGGCAACCATGGAGGTGATTC 901147 37 100.0 34 ..................................... AGGCTGTTGACGGATCACAGTTACGTCACTCGTC 901218 37 100.0 37 ..................................... TTGTAGTGGTGCGCACAGCGAACGGGCACAGGAAACC 901292 37 100.0 35 ..................................... GTGCGCTTTGACCCGCAGGATCTGCACGGCAACGT 901364 37 97.3 0 ....................................G | ========== ====== ====== ====== ===================================== ===================================== ================== 29 37 99.9 34 GTATCTCCCGCCCTCCGGGGCGGGAGTGGATTGAAAC # Left flank : GCCCATGGTGTTTTTATAATGTGGGTATTGGTTGCATATGACGTCTCAACTGAAGATGCCGCAGGACGCAAACGACTGAGAAGAGTAGCGAAAGCGTGTGAGAAATATGGTCAGCGAGTCCAGAAATCATTATTTGAGTGTCAGGTAGATAGTATGACACTTGAGAAATTGCGTGCCCAGCTACTTATGGAAATACGTGTTCAGGAAGACAACCTTCGCATCTACCATTTGGGGAATGCACATGATAAAGTAGTTGAGCAATATGGAGCCACAAGAACCATAGATTTCCAGGAGCCGCTTATTTTATGAACGCAGCAGCCAATTGCGAACCTATAGTGCAGGTAAAATCAGCAGGGTTTCGCAAATCCTATAAGGCCCTTTCAGTATCAACTCATATCAATGTTGCCCCGTCAATTATCATGACGTTCCAGCGCAGCATTTTCCCCTTTCGCAAATCAAACGCTTTAACACTTTTAATTGCTTCAGTTAGATTGAGGTGA # Right flank : GAAGCCATTCAAGAAGTGGTTAGGAGAGCTTAGTCATCCGGAGTCAAAGCGCTCCGGCTGCCGCACAGGCAGCTCAGAAGCGTGACAAAATGTCACGACTTCGCTCACTTCTGTTCACTGGAGCGCGGTCAGTCCAAGGGGGGGTGCAAATTGCCCCCCCCCCCTTGGTATGGCTTGATAGATGCTTCACACGTGTAGGATATACTTTTGAGATAACCTTCGAGCAAATGAGCAGACGGGTTGGGTGGTGCTGAGGCGCAGACATGTGGCGTTCCGGTGTGACACACGACACAGCACGCCAGATGTCTTGGTGTGTTTTTGATGTGATGGGAACTCAGGCCGATATCAGTGGATGCAACCTGCTGGATGCCCGAAAATCGGGCGTCGCTGTGGCATGCTGCTGTTCTGAAAGAAGTGAGGCGATGGGTTCGGTCTTTCCGGATCGTGCATCCGGCATCCGTGACCCTTCCGGTACCGAAATCCGGGTGGGTATAAATGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATCTCCCGCCCTCCGGGGCGGGAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-19.00,-17.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA // Array 2 902041-902252 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP084704.1 Desulfurispirillum indicum strain A2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 902041 29 100.0 32 ............................. TTCGGTTGTGGGCCAGGTCGTCCTTGATAGTG 902102 29 100.0 32 ............................. AATTATAGAACGTATAGAGTACATTATCGATC 902163 29 100.0 32 ............................. CGATAAATTCACCCGGCGAATACCGTCTACAT 902224 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 ATGTTCCCCGCACACGCGGGGATGAACCG # Left flank : GGGTGCAAATTGCCCCCCCCCCCTTGGTATGGCTTGATAGATGCTTCACACGTGTAGGATATACTTTTGAGATAACCTTCGAGCAAATGAGCAGACGGGTTGGGTGGTGCTGAGGCGCAGACATGTGGCGTTCCGGTGTGACACACGACACAGCACGCCAGATGTCTTGGTGTGTTTTTGATGTGATGGGAACTCAGGCCGATATCAGTGGATGCAACCTGCTGGATGCCCGAAAATCGGGCGTCGCTGTGGCATGCTGCTGTTCTGAAAGAAGTGAGGCGATGGGTTCGGTCTTTCCGGATCGTGCATCCGGCATCCGTGACCCTTCCGGTACCGAAATCCGGGTGGGTATAAATGCGGCGCTTTGTCCCGGCCCCATCGCCAGAAATGACCGGGGTGGACGCCCCCCGGCCGATCCGGGCCTGTCTGACAGGGCGTCCCCCCCGACCCGAACTCTGGTTTATGAAAATAGGTTTAGGGTGATGAAATGTCAAGGCGCC # Right flank : GCAGCCTTGCATGATAATTTTGCGGCTAAAATAGAAAAACCACCCTAACAGCACTCGCTCGGTGTTTAAGGTGGATGCTCAGGTATTTCATGATTGACAACGCTATACGATTATCTGGGGTGAGATTGACGATTAGGCGAGTGGGAGGCCGACCGTCCCTCCATCCAGGTGGCCCTGAGTAGATCAAGGATACCCGTGTTAGCGCGCCGAAAGTTTCTAACATCACTCGCCTGAAAGGAATATAGTCATGGCAGGCGTAAGCGTCAAGATGGAAGTGGATAGTATTGACCTGGCGGAAATCCAGCAAAATATAATCGTAAACGGATACGGCTACCGCCAGCCCGCCAAAAACCTTGCTCGCATTTTTGAAGCGCTTGATGCTCCTGCTCCAGTTGGAAGTCTGGCCACGTGGGTTCTCAATAATTATCCGGAAAATGCGATAACTCACGTGGCGAAAATCCTTGCCGAAAAGCCAGCAAAGCTGATACTTGGAGCATACA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCCGCACACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1146230-1145976 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP084704.1 Desulfurispirillum indicum strain A2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 1146229 36 100.0 36 .................................... CACAGGAGGCCGATCATGGCTACTGACAAAAAAAGA 1146157 36 100.0 37 .................................... GAAAGAGTTTCAGTTTTTTTTGAAATTCCAACTGCAA 1146084 36 100.0 37 .................................... CAAGATTTCCTCCCGCGAATGCGGCGAGGTTTCCCCG 1146011 36 91.7 0 ..................T.G...A........... | ========== ====== ====== ====== ==================================== ===================================== ================== 4 36 97.9 37 GTCAGAAGACCTGCCTCAACAGGCGGGGATTGAAAC # Left flank : CCGAGAGTGCCTGATGCTCGCCATCGTAGCCTACGACAGCCCCGACACACGTCGTCGCAACCGCATTCACAAACTCCTCAAAGGATATGGCAGCGCCGTGCAGCGCAGTGTTTTCGAATGCACCCTGAACAGACGCACCATCACGAAACTCAACCATGAGCTACAACGCGTCATCGACCCCCAGCATGACAACGTGCGCATCTACACCCTGTGTCACACCTGCCGTCAGCAATCATCCTCCCTGGGCATCGGAGAGCTGGAACAGGAACACCTCATCCTCTTCGCCTGAGAAAAGAACGTTTATGACCTTTACAGCAGCGCCAGAAGCCACTATATTTAATGACAATGACAGCGACCAGACACACAGGGTTCGCTCCCTTTATTTGCAAGGAGTTACCCAAACACACCTTCCTGCGACACCCTCCACAGGAAGCAACCCACCAGGGTTCGGAAAATCACCATCGCAAACACGCGCAGAAAGCGCCTCCGGGAAAAGCGCT # Right flank : AAACTTGAATGACGACTGCAGCTGACTGGATGGTTAAAAACTGCGCAGAGGTGTATTGAAATTGCACAACTGCCCATGAGGGAGTTAGGTCTAACTTGAAATATATCGACACTTATACTTCTGACATGCGGCGTGCTTTATGTCCGGGTACTCTCTCCTTCTCTCATAGAACTCCTTCCCTCCTTCGGCCCCCTGCTCCTCCCCCGGCAGGGGGTCATTTCGTTTTGGGCAAAAAAAACCCCGCTGGGCTTGGTGGCCGGTGCGGGGCTGTGATTTATACGGGTTTAGAGTTGCTTTGGTTTCAGTGTGCAGGTGCAAGGCGCTCGCGGAGCGTGGAATGAAGCGTACTCCCCGTTGCAATGACACGCGACGGCGAGCAACGCCGCAGACGAGGGTTTTTCAGCAGCCTGCTGATGGTGTGGCATATGGAACAAGTCCAGAAAAATATGCAGCACTCCTGCCTTCAGGGATTTTCAGGCTTTCCGGCCGATGCTTTCCGC # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAGACCTGCCTCAACAGGCGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.50,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : NA //