Array 1 214638-215763 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMOC01000047.1 Salmonella enterica subsp. enterica serovar Heidelberg str. 84-1004 SEEH1004_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 214638 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 214699 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 214760 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 214821 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 214882 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 214943 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 215004 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 215065 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 215126 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 215187 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 215248 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 215309 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 215370 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 215431 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 215492 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 215553 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 215614 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 215675 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 215736 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 232021-233684 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMOC01000047.1 Salmonella enterica subsp. enterica serovar Heidelberg str. 84-1004 SEEH1004_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 232021 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 232082 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 232143 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 232204 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 232271 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 232332 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 232393 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 232454 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 232515 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 232576 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 232637 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 232698 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 232759 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 232820 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 232881 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 232942 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 233003 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 233064 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 233125 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 233186 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [233228] 233228 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 233289 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 233350 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 233411 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 233472 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 233533 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 233594 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 233655 29 96.6 0 A............................ | A [233681] ========== ====== ====== ====== ============================= ====================================== ================== 28 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //