Array 1 344690-345368 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016199.1 Mogibacterium pumilum strain ATCC 700696 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 344690 35 94.3 35 ..........G..........T............. TTTCTCTGTTGCTTTCGTCTGTGCATTAGGTGTTC 344760 35 94.3 34 ..........G..........T............. ATCAAAAGTAGTTAATAATAAGTTAGCCATATAT 344829 35 94.3 35 ..........G..........T............. CTTTTGTTATCATTTCTTCTCTTTCGTAATTCATA 344899 35 100.0 34 ................................... CTAAGCTTCTTGCTTCAACCACTACTGCGTAGGC 344968 35 100.0 40 ................................... TTTAAGAATGTGTCCGTGAATAGTTCGATAGTTTTTTGGA 345043 35 100.0 35 ................................... CTTCTAAATCTGACTATCAAATCAAACTATAAATA 345113 35 100.0 38 ................................... AAAGTCACCTTCTGGAGTTTAAACTCTGGGAGGTATTC 345186 35 100.0 39 ................................... TCAAGCTTGGCAAATCTAAAGCGCTGGCAGAACCAAAAT 345260 35 100.0 39 ................................... GGTTTGCGGTTAAATTCCTTATAAACCTCGAGAGCGTAC 345334 35 88.6 0 ..........G.G......A.T............. | ========== ====== ====== ====== =================================== ======================================== ================== 10 35 97.2 37 ATTAGAAAACAAAAACCCCGAGAGGGGACGAAAAC # Left flank : GATACGGCACTATTTAAAAAAGATATTTCATACATAGAAAATGCAGTTGAGAACTTCCTTAATAATTACAATGAAGAGTTCCTACTCAAATTTAAGGAGGAAATTCCATACTATGGCAATGTAATTTATTTAGGTGGGGGTGCAGGTTATCATACAAAAACGGTGACAAGCTCTCTACTTAAAAACGAAGCCGATAAGGTTAAAATAATAGGTAACATCATTAATAACACTGTTAGTAATGATAAAAGAGACGAGCACAGACATTATGATGATTATAAGCTGGGGGTATCACCTCATATTGTAAAATTGACAGAATATGATGGTGAACTAGTGCAAATGGGACCATGCAGTATAAAAATTTCTAAACTTTAAGCCGTTGTTGAAATTTTAATAGGTTGAGCCGATTATTATGAAAGTGTGTTGGATAAGAATGATAAAAATAAGTTTAAGCCGCAAAAGTAAAAGGAAAACGTTGAAATCACACTTGTCCAACACACGCC # Right flank : CTTTATTAGTCTGGTCTTGAGAGATCTTGACTGCGTTATTTGAAAGAAATAGAGGTGGAAAGATAAAATGAAGAAAAATCAAATGATGTTAACATGTAGCAGTATAATGCTTATACTACAATCAATTGCGTATTATATAGTTTGGAATTCTGGATATAGCGAAACCATGTTAAGAAGAATGTTGTTAGTTGAATTGCTTACTTTAGCCTATCTGCTTCTTACTGTGCGTAGAATTGATTCAAATACTGATGAGAGTATGACTGGTTTTTGCGTAGCTTATATTGTAGCGTTATTTATGCTATTTCCAGTATTAGGTATTTTACTTGTCTTGCAGTTTGAACTTATGCTAATAGAGCTACTTATCATAATTCTGGCTATAGTTGTAGCTGTAATTGATAAAAGAAAGAACAATGCATAAGTGCATGAGTCAAAGAATTTAAGGAAAAGAGATAGGATTAGAAAACGAAAACCCCGAGAGGGGACGAAAACCAATCAGCTTC # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAAAACAAAAACCCCGAGAGGGGACGAAAAC # Alternate repeat : ATTAGAAAACGAAAACCCCGATAGGGGACGAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 345822-346288 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016199.1 Mogibacterium pumilum strain ATCC 700696 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================= ================== 345822 35 100.0 34 ................................... CAATCAGCTTCTACGAAATCGTCACTATGCCTTT 345891 35 100.0 37 ................................... CAACGCATACCATTAATCAAATAGAATCTAGCCAAAC 345963 35 97.1 39 ............G...................... ATATAGGTAGCTGGCGTTCTTTTTGCTTGCTTGTCATTA 346037 35 91.4 38 ........G...G.................G.... TTTGCACGCCAGTTCACAAACTCTGGGTTCTGTTCATT 346110 35 88.6 39 ........G...G........A............A AGGTGTGTAATTCTCTTTTTATGATTATTTAATCTGTTA 346184 35 97.1 35 ..........T........................ TGACTTTCTAAACTCTTTAGTCTGATTACTTGCCA 346254 35 85.7 0 .........T......T...............CCA | ========== ====== ====== ====== =================================== ======================================= ================== 7 35 94.3 37 ATTAGAAAACGAAAACCCCGAGAGGGGACGAAAAC # Left flank : TCGAGAGCGTACATTAGAAAACGAGAACCCCAATAGGGGACGAAAACTTTATTAGTCTGGTCTTGAGAGATCTTGACTGCGTTATTTGAAAGAAATAGAGGTGGAAAGATAAAATGAAGAAAAATCAAATGATGTTAACATGTAGCAGTATAATGCTTATACTACAATCAATTGCGTATTATATAGTTTGGAATTCTGGATATAGCGAAACCATGTTAAGAAGAATGTTGTTAGTTGAATTGCTTACTTTAGCCTATCTGCTTCTTACTGTGCGTAGAATTGATTCAAATACTGATGAGAGTATGACTGGTTTTTGCGTAGCTTATATTGTAGCGTTATTTATGCTATTTCCAGTATTAGGTATTTTACTTGTCTTGCAGTTTGAACTTATGCTAATAGAGCTACTTATCATAATTCTGGCTATAGTTGTAGCTGTAATTGATAAAAGAAAGAACAATGCATAAGTGCATGAGTCAAAGAATTTAAGGAAAAGAGATAGG # Right flank : AATAAGCCGTTGTAATTATTCATTTGTGGAGGGAAATATGGCTCATATATATGTGACTACCGGTGAAACGAAAGTTGGAGTCGAGGGAGGACGGCTTACCATTAAAAACAGGGATGAGACCGTGAGGTCGGTTCCGAAACAGACAGTTGAAAGTATTACTGTATTTGGGAATGCCGTTTTAAGTACACAGTGTATTCAGTTTTGTCTAACGAACGGTATATCTGTCAGCTTCTTCTCGGGTAAAGGCAAGTATTTTGGTAGACTTGAATCAACAGCTCATCATAAAGTAGAAGTTTTAGAACAACAAATAGATACCTTTAGAGATACCCTGTTTGGTCTGGAATTATGCAAACGGATTGTTTCTGCGAAGATTAGGAATCAAGAGGTGGTGCTTAGAAGATATGCGAAGGAACACACTGTCAAGCTAGAGATGCTGATAAAGGATATGAAAATATACCGTGATAAAGCAGAATGTGCAGACGTAGTGGAAAGATTACTGG # Questionable array : NO Score: 2.53 # Score Detail : 1:0, 2:0, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAAAACGAAAACCCCGAGAGGGGACGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 1567052-1565437 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016199.1 Mogibacterium pumilum strain ATCC 700696 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1567051 28 100.0 33 ............................ TTACCTGCCTGCGCTTGAAAAATATGCATATGA 1566990 28 100.0 33 ............................ TGCTGTAATTGAAGAGAGCTTCCTGAAACACAT 1566929 28 100.0 33 ............................ TGTATTTACTGACTTTATCTCGCCTACCATTTT 1566868 28 100.0 33 ............................ CACCGCAGAAGAATCCAACGAATGTGTCTGTTA 1566807 28 100.0 34 ............................ TATGGTGTTTGCTGTGACTATGGCATTTGTTCAG 1566745 28 100.0 33 ............................ TGTCTTTTTAAACAAGTCGACCTTTTAGAAACA 1566684 28 100.0 33 ............................ TAGATAAACAAATTAATTCTATTTTGTGTATTA 1566623 28 100.0 33 ............................ TGTCAGGCGTATAGCTAAGGTGATAGTCTTTAT 1566562 28 100.0 33 ............................ TGGGGTTAAGATTCAAAATTCAGATGAACTAAA 1566501 28 100.0 33 ............................ TGCCTTGTAACATATACTAAAATTAAGGTGGCG 1566440 28 100.0 33 ............................ TGCAACATACTTTTGTTTACGAGGTGTACCCAT 1566379 28 100.0 33 ............................ CCGACAATTCAACCAATGCTGCACAAGCAAAAG 1566318 28 100.0 33 ............................ GAGAGTGCGAGTCAGATGTTCGGTAACCTAGGA 1566257 28 100.0 33 ............................ TCCGTCTGCAAGGTCGGGGTCATATCCTTGTGT 1566196 28 100.0 33 ............................ TACACTCCGCAACATCATCATGGCATATGGCGG 1566135 28 100.0 33 ............................ CGCCCTCGCAGCATTTCCACTTGCTGACTGTGA 1566074 28 100.0 33 ............................ CTTCTGGACGAACGCAAGAACGGTTACCAGCTC 1566013 28 100.0 33 ............................ TGCAACATACTTTTGTTTACGAGGTGTACCCAT 1565952 28 100.0 33 ............................ CCGACAATTCAACCAATGCTGCACAAGCAAAAG 1565891 28 100.0 33 ............................ CCCATTGAAATATCAACGTTTTGATTTTGATAA 1565830 28 100.0 33 ............................ CTAATTATTTACAGTTTCAATAACTTTATTCCA 1565769 28 96.4 33 ................A........... GAGAGTGCGAGTCAGATGTTCGGTAACCTAGGA 1565708 28 100.0 33 ............................ TCGGTCACTGATAAAGCAATAGACGCGGCAAGT 1565647 28 100.0 33 ............................ CAGGGCAATTCTTGATCTAATCGAATTCGACTG 1565586 28 100.0 33 ............................ TACACTTATCATATTACACCCCCTATGCTCTTA 1565525 28 100.0 33 ............................ TCTGCTCTAAATAACGATTATCGAAAGATATAA 1565464 28 75.0 0 .........TT....A...T....G.TT | ========== ====== ====== ====== ============================ ================================== ================== 27 28 98.9 33 GTACTACCCGCGTGAGCGGGGGTGATCC # Left flank : GTTAATAAAAATAATATTATAGAAGTTGCTGCTATTAAGTGTTCGGATAACACATGTATAGAGTTTCAAAAGTTAATTAAAATATCTAGGGAACTTCCTGAACTTATTGTTAGTCTTACTGGAATTACTAACGCTATGATAGAAAAAGAGGGTGAATCTTTAGAAGACGTTCTTGACGATTTAAGTATATTTATAGGAAATAATACTATTGTTGGATATAACATTAAATTCGATATGAAGTTCATAAATTCTAAAATGGCTGAATTTGGAAAACGGACTATTACCAATCGAACTATCGATTTGATGATTTTATCGAAAAAGGAAAACATGTATTTGCCTAATTATAAATTGGAAACTGTTTTAAATTCATATGGGATCAAAACCAAGATGAAACATAGAGCTTTAGAAGATGCAAAAAATACATACAAGCTGGCTAATAAACTAAATAAATTTAAAAGTTTTTTAAAGCGATAATGTGCATTTTTAGGTTGTTTTTTAGT # Right flank : TTCATTTGCACTTATCCTATGAGGAGCATCCTGACTATAAGGAGGCGATTAAGAGCAGCAATTATAATTATAGTATCCACATTGCTTGAATTCCCAAGAACAGGCTGCATCAAGAAAGTCTCGAAGGGGTTCTTCTTCACGGCAAATAGTGATTGTGATACGACATAAATTATACACCTCTCTTTTTTCGTATCTTACTTACATGCAATCATGTTAAAATCTCTACTAGATATGATAAAATACTACGCGATTAGTCAGTGAAACTCGCTGACTCAGAAGTATGAGAATATAGGAAATTAGATTATATGATTAAGAACGGAGCAATTTTCATAATTATATCCGGTGCATTGTGGGGGACGACCGGAATATATTCACATCTATATAGGGGATATGGCATTCCGCCGGTGACGATGTCAATCTTACGAGTATTTTGTGCGATGCTCGTCATCACACCATTTATGATTAAGAAGGGAAGAAAGAGCTTTGTCCTCAGCAAACGT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACTACCCGCGTGAGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.20,-10.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA //