Array 1 122717-121430 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTQY01000010.1 Bacillus methanolicus strain DE0185 NODE_10_length_122803_cov_32.643832, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 122716 32 100.0 34 ................................ TTTTTGGGTGATGAAGCAGTGAGTATAACTGATG 122650 32 100.0 34 ................................ GTTTAAATACTACCGCAGTGGTCGCCTCGGCAAG 122584 32 100.0 34 ................................ TTTCAGGTTTCGGCATGCAAGCTGCTGAAACAAC 122518 32 100.0 34 ................................ ATAGCTCTATGGTGGTTTTCATTAACTACATTAA 122452 32 100.0 33 ................................ ATTGCGTGTAATAAGGATGGTGCAGTGATGAGC 122387 32 100.0 33 ................................ TCCCCAGCTGGATATGGGAGAAGGCAGAAAATA 122322 32 100.0 35 ................................ CAACGTGTCTATAAAGGAGTACAACCCTCCCTTAG 122255 32 100.0 34 ................................ TACGTTATTTCGGCTAAACGAGAACATTATTTCC 122189 32 100.0 34 ................................ ATCATCACTCAGCTTCATGCGATCCTTAAATTGC 122123 32 100.0 34 ................................ TGTAATCTCTCCAGTGAGCGAGTACCCAATCAAT 122057 32 100.0 35 ................................ TCGATCCGGAGTAGTAACTAAAATATCGTCATACC 121990 32 100.0 33 ................................ TGTGAATTTTACCCCACGTGGATGAAGAATAAA 121925 32 100.0 33 ................................ AAAACTTTATTAAAACAAATAAACGAAAGTTAT 121860 32 100.0 34 ................................ TTAAATTGCTATATCCCCACCTTGGTTTATGGCT 121794 32 100.0 36 ................................ TATTAGATATCATTGTAAAAGTTTGTAAACCATCCC 121726 32 100.0 34 ................................ AGTGATGCGATCACCTAACAAAAAGATATCTAAT 121660 32 100.0 36 ................................ AGCAAAAAAGCTTCGAGAGAAATTTGGAGAACTGGC 121592 32 100.0 34 ................................ TCGCACGACATCAAACATCATAGAAGCAAATTCG 121526 32 100.0 33 ................................ TAATGTCCGGTCATAGTCTTTCGAAACTTGTAA 121461 32 96.9 0 ...........A.................... | ========== ====== ====== ====== ================================ ==================================== ================== 20 32 99.8 34 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : TGATTAGTATAGTTCATTCTACTTGACCTTAAAATTTCTGTCTAACTAAGTGTAGCCGATCCAAAGAAATATATATGGCCATCAAT # Right flank : ACTGTACAGTTGGGTACTAATGTAGAGATATGGATTGAAATCGTGACGGTCTACCTAAAGACGAAATGGAAATGACTGTCGAACCCTACATAAATTTCACACCAAAGGAACTAGAAAATAACACAGGAGAAGACAATGATTGTAGCGAAGATAGTAATATAATAAAATATGACTTTTCTGGTGGTGTGGATTGTGAAAAAAATTTTGACATCAAAGAAGGCTGTGCTTGGAGGCTTGTTGTTCTTGCTTATTGGCATATGGGTTTTTAGCGAAATGAGCAATCGTTTTTCCATGAAGGGGCAGGAGCCAACTGATGAAGGCTATATTGTTTTTCACAATGGTACGAAATATTTCGTTAAAGGAGAAAATATTACAGCTTCTGATTTGGAAAATTTTTCTGATGAAGATGTTACGATGTTTTCAAAAAAGTTTGAGGAAATAGCGATATTACTAGATGATGGAATGAAACTTTTAGGGACAGGAATTAAAAGTGGTGATCA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 67720-69401 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTQY01000017.1 Bacillus methanolicus strain DE0185 NODE_17_length_87881_cov_31.988989, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 67720 32 100.0 35 ................................ GTGTTTGGGATAAACAGTACAAAAAATGGTGTGAC 67787 32 100.0 36 ................................ ATGAAATGTACGGTTGGTTATTCGGAGGGTTTATCG 67855 32 100.0 33 ................................ CTTGAGAACGTCAAAGGGCTCCTTAACCACGAA 67920 32 100.0 33 ................................ TGGAATTACGATTTTGGTGGTACTTGTTTTTAA 67985 32 100.0 33 ................................ AGAATGTGATTGGAAATATGACTAATAAGCAGC 68050 32 100.0 34 ................................ ATTGTTTACTAGCTTTAGATTATAAGGATGGTGA 68116 32 100.0 34 ................................ TGTTAAATATTCTTATGCAAAAGTTGGTGATTAT 68182 32 100.0 34 ................................ TGCCGTAGTTGTCGGTCTCAATCTTGGCGATATC 68248 32 100.0 35 ................................ GGCAAAGGGATTAAGAATGTATTTGATGGTGATAA 68315 32 100.0 33 ................................ CCTCCTAATCAACTGGACTATCATTTTGTTGCA 68380 32 100.0 34 ................................ TGAAAACCAATCAGACATTGGCGCTGACTTTGCA 68446 32 100.0 36 ................................ CGGTCTGTCCATGTCTTTAGCGGAAATACCTTCATC 68514 32 100.0 33 ................................ TGCTTGTGATGATGTGGAATATGAACTTAATTC 68579 32 100.0 33 ................................ TACTTGCATATGGGTGGAGACGCGAATATAAGC 68644 32 100.0 34 ................................ CTTCTTGTGCTTTTTGAAGCATCCCCATTCTCAC 68710 32 100.0 34 ................................ ATTATGCTGCCGGATTAGCAACTATGTATGATTT 68776 32 100.0 34 ................................ CTTTGTTTTTTGTTTTTACTGTTGATGTTTTTGC 68842 32 100.0 33 ................................ TTTTAACCAGGACTGCAAAGCTGTCTTTACTTT 68907 32 100.0 35 ................................ CGCAATCTTAATCGAGTTTATACGTTCGACCTTAC 68974 32 100.0 35 ................................ CAGAGGCGAGTCTATCGAATTATACAGTGCTCCGT 69041 32 100.0 33 ................................ TGTGATTTTTCCGTTTTCGTCAAGCTCAATCTC 69106 32 100.0 34 ................................ CCAAACATGAAGAAGAAACAGGCTCCCACAATCA 69172 32 100.0 34 ................................ AGCCATCTAGTATAATTTGTTTAGATGAATCACA 69238 32 100.0 33 ................................ ACCTGAGTATGAAAATAAGCAATTCTCAGGGGT 69303 32 100.0 35 ................................ CACTTGCACCAATTATAAAACTGTTGCCCTCTTTT 69370 32 81.2 0 ......T...A.......A...AA.....G.. | ========== ====== ====== ====== ================================ ==================================== ================== 26 32 99.3 34 GTCTCCCTCTGTATGAGGGAGTGGATTGAAAT # Left flank : CGATGATCTGGATGTTTATCCCCCATTTATGTGGAGGGGATAGCTTTGTTAGTGCTTGTAACCTACGATGTGGCAATTACAACAAACGGCGGAGCGGCCAGATTGCGAAGAGTGGCTAAGATCTGTGAGCAATATGGTGTTCGAGTTCAAAATTCTGTTTTTGAATGCATCGTAGACGCGACCCAAAAAAAGAGGTTGGAAATGGATTTAATGAAGGTGATTGACCAGCAATCTGACAGTATCCGAATCTACCAGTTGGGTAATCAATACCGCAATAAAGTGAATCACATCGGCGCCAAGGAAACGCTCAATGTGGAAGACCCGCTCATCTTTTGACGTCGCTGGAAAACCTGAAGTGAACATGAAAACCCGGGGAGGTTTTCCGAGATTTTTCGTTAATTTTCCTGTTTCTGTAAGCGGATTGTGGAACTTGAATACTTCAGAGTTGAGAGTTACACAACATCTTGTGTCAAAGTATTAGTGGATTAAAAGATGTTGCG # Right flank : TGAGGATATAAAATAAGAGAAGGCAATTCAATTGTATCCTCACATTCATTAAAGTTTTCACTTTTATTTCATAAAAAGTATGAATTTTAAAGTAGTTCTTCTCTCACTTTTGTAATAGAATGAAGTTATTGAAAGGGTTTTCATAAAAATGGTAACTTAGCCTGCAGTTATCAAAGGAGAGGATAATAATGAAAAAGATTATTAATGACCCTAATTTGGTAGTACAAGATATGCTGAAAGGATTAGTATCTGCTTATCCAAACAGTTTCAAACAGGTGCCAAATACAACAGTAATTGTGAGGAAGGATGCTCCGACAACTGGAAAAGTTGGTTTGGTTAGTGGTGGAGGCAGTGGACATGAGCCTGCCCATGCAGGTTATGTTGGAAAAGGGATGTTAGATGCAGCGGTGTGTGGGGAAGTATTTACTTCACCGACTCCTGATCAAGTTTATGAAGCGATTAAAGCAGTAGATGGTGGTGCTGGTGTATTTTTAATCATT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCCTCTGTATGAGGGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //