Array 1 555784-558118 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT906446.1 Megamonas hypermegale strain NCTC10570 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 555784 30 100.0 36 .............................. CAAAAATATAGCATAAATAAAAAATAGTTTTTACTG 555850 30 100.0 36 .............................. ACAAAATAAGTTTTATCAATTATTTTTTTCTGGATA 555916 30 100.0 36 .............................. TTGCTTGCCCCTAAAATAGAGCCTAAAAACATTGCT 555982 30 100.0 35 .............................. GAAATTAATCCAATAAATGACCATAATAAATCTTC 556047 30 100.0 36 .............................. TTTTATATTCCTCCAATTTTAATATCCGCAGTTTAT 556113 30 100.0 35 .............................. ACGTTTGTTAATGTATGTTGGATATGGATACATAG 556178 30 100.0 37 .............................. TTCCCCAAATAAAACCAAATAATTATTGTTCGTATAA 556245 30 100.0 34 .............................. TGAATAAAAGCAATTTCATTTTCTTTTATTCCTT 556309 30 100.0 36 .............................. GAATTTATTTGGGATGACAGACCCGAACATGGCTAA 556375 30 100.0 36 .............................. ATTCTGTAACGTCTATTGTTGGCCACAATTATTTTA 556441 30 100.0 35 .............................. AAAGCAGCTTATGTAACAGGTACAGCACTTCTTGC 556506 30 100.0 37 .............................. TAAGTTTTTGCGTTTGCCACTTTATTTCCTCCTTTCT 556573 30 100.0 37 .............................. TTGTAATGGCATTTTATACGGGAAACAAGACAGTCGC 556640 30 100.0 36 .............................. AATGTTATTTTTCGTGATGACATTATTATGTATAGC 556706 30 100.0 36 .............................. TTGACTAAATAAAAGATGTTTTCATTGCCAATTTTG 556772 30 100.0 36 .............................. GGAACTATTTCCTACAGGTAAAAAGTTGATTATTAC 556838 30 100.0 35 .............................. TCTATTGAATATAGAAAAGCGTTTATGAATTATGT 556903 30 100.0 35 .............................. TAATATATTCACCATTTGATACACCGATTAATCTA 556968 30 100.0 36 .............................. GTAAGTGTATTTGACCAATACAATATGCTTGAAAAA 557034 30 100.0 36 .............................. GCGCAAGGCTTGTACTGGTCTGACGCTCCAGAAACA 557100 30 100.0 36 .............................. CTGAGTAAAAAGTATTGATTTTATTGGGTTTGTGGC 557166 30 100.0 36 .............................. CTATCCAGCTGTTTCAAGAAAAAAGAATCAACTTTA 557232 30 100.0 36 .............................. TTGATTGGTGCAAATGTTCTACTTTTAGATGTTAAA 557298 30 100.0 36 .............................. ATTGCACTTCCGTTACCAAAACCACGATTCCAGCCG 557364 30 100.0 36 .............................. TGCGCGCTCCAAATATTGCCAACAGCACCAACAACA 557430 30 100.0 35 .............................. GACGTTGCGAAATTACAGCTTATTAACGGAGGTTA 557495 30 100.0 36 .............................. TCTGTTGGGACTTCTTTACCAATGTCTTTAGCAGCT 557561 30 100.0 36 .............................. GCTTGAAATTTTCGTTGCGGTTTTGATGCTAAAATT 557627 30 100.0 35 .............................. TTTTTTAAATTATTTAATTGTTCTTGAGCTGATTT 557692 30 100.0 36 .............................. GTATCTAAGTTATCCAATATCCAAAATGCTAACTTT 557758 30 96.7 35 ......................T....... CCCAAATTTCCGTTTCCGCCTGCCCACGCTCGGCT 557823 30 96.7 35 ......................T....... TTTGGTATTGTGTAAGTATGTTGTGTTTTTAATAC 557888 30 96.7 38 ......................T....... TTTACGATTGCGCGGGCGTCTATAATAGTCTGCATTAC 557956 30 100.0 36 .............................. TAAGTGTAAACATTTACAATTATGTTCAATTATGTG 558022 30 90.0 37 ............T...T...A......... TCTATAACTATTTGTGTTAAAATCTTTTGACGTTGAA 558089 30 83.3 0 ............T...AA..A.....A... | ========== ====== ====== ====== ============================== ====================================== ================== 36 30 99.0 36 GATTAATAGCAACATACGATGTATTTGAAT # Left flank : ATTGATATAAATACAAGAAAACCACTTTTAGGCAATATAACTGGCGGACTTTCTGGCCCAGCTGTAAAACCAGTAGCAGTACGCATGGTATGGCAAGTTGCAAAAGTTGTTAAAATTCCTATCATTGGCATGGGTGGCATCACTTGTGCTGAAGATGCTATCGAATTTATGCTTGCAGGAGCAACCGCTGTAGCTGTTGGTGCTTATAATTTCGTTGACCCATCTGCTTTAAAAGTTGTAGCTGATGGCATTGCAGATTATATGAAAAAACACAATATTGAAGATGTAAATGAACTTATAGGAGCAGTACAAGCTTAAAATTAAGATTTTACCAGGTGTATTTTTGATAAATAATCTATAAAGCTAAGAAATATAAGCTTTTGAAGCGGTTTTTTAGCATGACTATAAAAAATCAAAATCGCCTGGTAAAATTTTTTCATATCCTTGAATACCAAGGGTTTAGAGATTATAATAAAAAAAGAAACCTTGATAAATAGAGG # Right flank : TGATAAATGATAAAAGAAGGTGATATGTTGGACGGTATACTAGAAATGTTGTTTTTTTGTTTAATTTTAGGTCTTATTCCTGCTTTGATTGCTAGTAATAAAGGTCGTTCGTTTGTTTTATGGTATATTTACGGCTTTTTCCTTTTTATAGTTGCTCTTGTACATGCTCTTTGTATTAGTAAAAATGATGATGCTTTATTAAAACAAGATGATAGTTTAAAGAAATGTCCTTATTGTGCAGAAATAATAAAAAAAGAAGCTATAGTTTGTAGATACTGTGGTAGAGACTTACCACCTGTAAAAGAGGAAAAAAACAATGACAATAATGATGATGATTATGAACCATCTGATTATATTAAAAGTATAATTGCAAGTAGAGAAAAATATAAATAATTTATATTGTGATAGTTTTTTTGACATTAGGATAAAGATTTTGTTTATAAAATTCATGTGTAGTTTTTTTGTAAGAATTTTTTATTTATTTTATATGAATATATTAG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAATAGCAACATACGATGTATTTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 658906-659592 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT906446.1 Megamonas hypermegale strain NCTC10570 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 658906 30 100.0 36 .............................. TGGTTGCCCATAAATTTGGAAAAAGACATGACCATG 658972 30 100.0 34 .............................. TTGTATTTGGTTCTACATTTGTTTTTGGATCTAC 659036 30 100.0 36 .............................. ATGGAAATAACCCAAGATTTTCCCAAGTCATGCAAA 659102 30 100.0 36 .............................. ATTGATTAACAAAATAAGTGCTAATAAGTTTTTTAA 659168 30 100.0 36 .............................. AGATAATTTTAAAAAGTTTTTAACAGAACTAAATAC 659234 30 100.0 36 .............................. ATGTTGCATTTAACATCTCCCGTTTTTATTTGGCGG 659300 30 100.0 36 .............................. TAGCTACCCTGAAGATTATAAATCATCTCATTTACA 659366 30 90.0 36 ............ATT............... TTATATTCAGGAAAAATATGTGTTATATACAGTTTA 659432 30 90.0 34 ............ATT............... TTATCAAAAAAATCAAAAAACTGGGGGGTTAATT 659496 30 90.0 37 ............ATT............... ATAGAAAAGGATACCAGGTTTATTCGCAAATGGAAAC 659563 30 90.0 0 ............ATT............... | ========== ====== ====== ====== ============================== ===================================== ================== 11 30 96.4 36 GTATTCGTACAAGAATTGTTATGGTTTATC # Left flank : TCTGCCAAAGAAAATAATTGAATTCATCTATACTTTAACACCGCTCATTGTAAAAGATGAAAGAGGATATTGGCGAAGTGTGATGAGTGAAGAAGAATTTGCAAGGCGCATACGCATAAATCTAGCCAATAAATGGAATTCGTTCAATAATGATAATATAGATGAAAATTTTCAATTATATACAACAATGGAGTTTTTGAATAAAGTTCCTATTTCGATAGAATATAAAAATGTAAAATTATTAGGTGATAAAATTCGTCTAAGCGTTGCGGATAATGAAATAGCGCAAAAGATGGCATATATGTCATTAGGCACAGGCTTAGGAGAAATGAACTCCCGCGGAGCAGGTTTTGTAAATTATCGCTGGTTATAAAAATAAATAATGAAAATAAAAAAGCAGCATGAATTTCATGCTGTTTTTTTATGCCTTTTTTAGTTATTTGCAAAAATTGTTAGGGTTTATCTTTTAGTGTTGAAGCGTTGTATCAACTTCAAATATA # Right flank : CCTTGTAAAATCAAGGTTTGTATATTTAGTATAGCTTAAATTTATTTATTTGACAAGGTTTTGCTGATTTTTACCAAGTGATGAAGATTTTTTCTGTTTTTATAAAAAAGCGTGATAAAAGCTTATAAATAAAGGGTTTTAAAATATTTACAATTTTTTGGGCTGGTAAATATAAAAGACTGAATGTAATCATTCAGCCTTTTGGGGATTTATTTATTAAGATATTTTTCTCTTAATGCTAATTTATGTTTCATAGCGGCGATAAAATCTTTCGCTCTTTGAATGTCATTTTCATCGGGGTGTTTTGCTGCACTTTCCCAGCGTTTTTTATTGCGTTCTGTAGCTGCATGAGGGTCATTTTTATCAGTATTATTTTGACGGCGAGCTAATAGCGCAGGATTTATCTTGCCTTGGCTGGAAAATGTTCCTAGTATAGTACAATCTTCGCCTAATTTATAAGCAGCACGGGCAAATGCTGTTACAGCGTGTTCACTGCCAGG # Questionable array : NO Score: 3.08 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCGTACAAGAATTGTTATGGTTTATC # Alternate repeat : GTATTCGTACAAATTTTGTTATGGTTTATC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 3 734841-733231 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT906446.1 Megamonas hypermegale strain NCTC10570 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 734840 30 100.0 36 .............................. ATTAATTCTGTAGCCGTAGAAGCCTTTTCAGCGTTT 734774 30 100.0 35 .............................. TAATAATTACCACCCATTATGCAGCTATACTATCA 734709 30 100.0 37 .............................. TAATCTCGCTGTTGGTTTGCGTCTGAAAAAGAAAAAA 734642 30 100.0 35 .............................. GCTGTTCCTGTAATAGGTAATGTAGGTGGTAGTTT 734577 30 100.0 35 .............................. CTGGATAAGATTTATAAGAATGAAGAACTATATGA 734512 30 100.0 36 .............................. CAGGCAAACATTGATAGAGCGTTATTATTAGAATTT 734446 30 100.0 35 .............................. CCTAAAATAAAGAAATTGCGTTCTGTAGCTGGTGG 734381 30 100.0 36 .............................. GGAGGCTCATTATCAATATTAACATCTTCTTGATTA 734315 30 100.0 36 .............................. TCATCAGCAGCAGTATAATAAGTAATAATTGCCTCT 734249 30 100.0 36 .............................. TCATTTTTGCTTAATCGTGCAAATACACTTGCTAGT 734183 30 100.0 36 .............................. TACAAATTCTCTATCCACTCATTATCCATTTTTATT 734117 30 100.0 36 .............................. CTATTTCTTGTGTTAGTGGTGTTTGTCTGTAGATTA 734051 30 100.0 36 .............................. GGAAATGGAAAGACTCAGAAAAATTCATAGACCATG 733985 30 100.0 36 .............................. TTGTTTAAATCTAATTTATAAATCATTGCAAAATTT 733919 30 100.0 36 .............................. TTTTCTTGAATGTGCTGCTAGAACCATAACCATAAA 733853 30 100.0 36 .............................. TGTATTTAGCAAGGTTAGGGTCGACAAGATTTTCTT 733787 30 100.0 36 .............................. ACAAAAAACGCCAACACAAGCAGAAGTTAACGAAGC 733721 30 100.0 36 .............................. CTGTTAAAAATTGTGCTGCCGAAGATTTAGAAACCT 733655 30 100.0 36 .............................. ATGGGGAATTAATAATATAAATTATGCAACATCCAA 733589 30 100.0 35 .............................. GTCATCAAGATGTTAATTTCTTTGACTGATACAAC 733524 30 100.0 36 .............................. TTTTCCGAACAAATAAGGATTGAAACGATAAACACC 733458 30 100.0 37 .............................. ATAGTGCAAAAGATAGATAGATACTATCCAAGTTCGC 733391 30 96.7 35 .......T...................... TAACTCAAGAATTAAAAAACTACTGGACTGCTCAC 733326 30 93.3 36 .......T..................A... CCATAATTAAAGCAATGTAGTATATAATATAAACAA 733260 30 90.0 0 A..........G..........T....... | ========== ====== ====== ====== ============================== ===================================== ================== 25 30 99.2 36 GATTAACCTTAACAAGAGTTGTATTTGAAT # Left flank : CAAACTTATTAAACAATAATTTTTCTGCTGATGAATTACAATGCTTATCCCGTGATATACAAACTGATTACATCATCATTTTTAACGGTGGTAAAATCAATTTTTATAATGCACAAGGCGAAGAAATTTCCGCTGATACAGATATGAATAAAATCGCTTTATACCATCAAACTAAAGATGTAAATATCGATATCACCCGCGAAATCGAAGTTCGCTTCACTGATTCTTATATCAATCGTATTATGACTAGCAATAATATATTTCAATCTTATATAGCTTGAAAACGATAAACTAAAAGAGCCTTTAAAGGCTCTTTTTTTATGCATTTTACCAGCCATAAAATAAACCTCTTATGCTAAAACCCTTTAGTTATAGGCGTTTATCGCTTTTTTTTAATAAATATGAAAAGATAACCAATCACTTGGTAAAAATAGATAAAAACATTGATAAATAAGGCTTTTTAGGATATACTAGAAAAAAGAAATCCAATATTTACATGG # Right flank : TTTTCTAGCCATTTATATATAATTGTTATATTAACAAATTATATATAAAAAATACGAGGTGTTATAATGGAAAATGTAACAGATATTAGGAAAGTTATAATGGATATATGTTACCAAGATGGTATTACACGTAGAAAAATACTAGCAACGTATAATGAAAAATATAATAAAAAAATGTTAGAATCTGTGTTTAACAAAATGATAAATAGTAATAATATTAAGTTTAATACCTTAGTAGATATATTAGATAGTATCGGTTATAAAATAGATATAAAGAAAAAAATCTAATAATTTTATTGGATTTTATGAATACTTTATATGGCATTTTTTATTATCATATTATTAACAATAACAACTATTATTTATACAAAAAAACTACTGGAAGTATAATATTTATTTTTATAAGTATTGTACTTCTATTTTTTTATATAGTTTTGTTATAATCTCATTAAAATTAGATTAAGTTTAGATTATATTTTGCGTTAAACGTAGAAAAGCAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACCTTAACAAGAGTTGTATTTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 4 1167863-1166382 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT906446.1 Megamonas hypermegale strain NCTC10570 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1167862 30 100.0 35 .............................. ACGCTTGCTTGCATATATGGGTATTCGATAGATTG 1167797 30 100.0 38 .............................. ATAAAACTTCCAGTTATAAATAATTTACTGTTTTCTAT 1167729 30 100.0 36 .............................. TTTACAATCGCTTGTGTGTCGATTACTGTTTGCATA 1167663 30 100.0 35 .............................. GAAGCTCATCTCTAAACATATTTTTTGTAACTGCG 1167598 30 100.0 36 .............................. GGAGCATACAAGTCTGCACCTGCCATTCGTGGCTGA 1167532 30 100.0 37 .............................. TCGAGTATTGTTAGTTTTCCAAACTTTTTATTTATTA 1167465 30 100.0 36 .............................. ATAAACTTCATCATGTTTCCTGTTGTTCCATTTGTA 1167399 30 100.0 38 .............................. ATGAATGTAAATAATAATATTTATAGGCTATAGCTTCT 1167331 30 100.0 36 .............................. GGAACTAAATGAACAAGAACGAAACACAATGCTACA 1167265 30 100.0 36 .............................. GCTGTATCAAGTGGCTTTGAATTCGGCAAAACTTGC 1167199 30 100.0 36 .............................. AGGAGTTAAGAAAAGACATCGGCTTAAGTCAAACAG 1167133 30 100.0 36 .............................. TGAAATAACACCTCTCTTTAATTTTATACTGTTTAT 1167067 30 100.0 36 .............................. TAAATATTAAATGCAATTTTGGCGGATTTTAAAACG 1167001 30 100.0 36 .............................. GCTATTACATGGAGTAAAGAAAAATTCGTGGATGAC 1166935 30 96.7 36 ................T............. ATGGTAGTATTTAGTTTTATCTAGCCAATAAAAATT 1166869 30 96.7 39 ................T............. GACGGTGAAAAGTTTATTATTCCAATAACACCGCGCACC 1166800 30 96.7 36 ................T............. AAAATATGAGCATTTAATAATGTATATATATAAAAT 1166734 30 96.7 34 ................T............. ACAAGAGGGTGATTTTTTATAATAGTTTTATCGG 1166670 30 96.7 36 ................T............. AGGAACACCATAAGAAATTGGGAACTTGGAATAAGA 1166604 30 90.0 37 A.....T.........T............. TGTTAATATTTGATATGTTAATGACTGATGAAAATTA 1166537 30 93.3 39 ......T...................A... CTCCAACGAACCTGATAAGTATTTTTACTGCCTAGTTGC 1166468 29 90.0 28 ......T.....T...-............. AAAAAATAAACTGGTATTATTTATACCA Deletion [1166412] 1166411 30 76.7 0 .T....A.T...T...TA........A... | ========== ====== ====== ====== ============================== ======================================= ================== 23 30 97.1 36 GATTAACAGTAACAAACGTTGTTTTTGAAT # Left flank : ATATTCATTGAAAGCGGGATATTGATAGATGCGCAAAAAAATAAATTATAATTATGCTTTTGTGTTTTACGATGTAAATGAGAAGAGAGTGCAAAAGGTATTTAAGATATGTAAAAAATATTTATCACATTTTCAAAACTCGGTATTTAGAGGAGAAATAACACCATCAAAATTAATGAAATTAAAATTGGAACTACAAAAAGTTATAGTAGATGAAGAAGATTTTGTTTGCATAATAAAGTTAATGAATGATGATGTATTTGGTGAAGAGTTTATAGGTAAAAAAGATGTAGAAACTGGAGAAAGTTTGTTTTTATAGACTAAATTTTACCAGGCATAAAAATAAGCATATGCCAATAAACCCTTATAAATAAAAGCGTTATGGCTCATTTCTTTCATTGGAAAGATAAATGCATTATGCCTGGTAAATTTTACTTAGAATGTTGAAATGTCAAGGTTTTTGAGCTATATTATAAAATATAAAGTCTTTAAAGACGAGG # Right flank : GAAGTTTTATATTAATTTTTGCTTATATCTATCCATTCGATAGCTTTAGAATATTTTTCAAGCTCTGGAATAGTTAATTTTATGGCACTGTTTCGGCTACCACAGGCTGGATAAACGATATCAAATCGTTTTAGGGATATATCAAGATATACTTTTACGCCATCTTTTGGTGCAAATGGGCAAACGCCACCGATTGGAAAACCGGTATAGGTTTCTACCTCATCACCTTTTAACATCGTAGCTTTTTTGTGAAATTTTTCTTTAAATTTATGATTATCTATTCGTACATCACCAGCCATTACCACTAAAATTGCAGTATCGTTTAATTTGAATGACATTGTTTTAGCGATACGTGCTTCTTCGCAATTTAATGTTTGAGCAGCTTCAGAAACAGTTGCGCTAGAAGTTGGAAATTCCATGACTTTATCTTCCATATTAAATTGTTTAAAATATGCTTTTACCTTATCAATTGACAAAATAATCATTCCTTTATTGTGTTT # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACAGTAACAAACGTTGTTTTTGAAT # Alternate repeat : GATTAACAGTAACAAATGTTGTTTTTGAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 5 2122280-2122627 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT906446.1 Megamonas hypermegale strain NCTC10570 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ======================================== ================== 2122280 26 100.0 40 .......................... ACTTAGTTGTTCCTAAAATAGAAACAGAAAAAATTACTGC 2122346 26 100.0 40 .......................... ACTTTAATATAGCGCTTCTTATTTTTACGCTCTCTATTAA 2122412 26 100.0 38 .......................... ACTTTTAGATATAGAAAAGCAGGATATGGATTTAACGA 2122476 26 100.0 38 .......................... GCTAAGGCAAACAAACATATTAAGACACATAAAGTCTT 2122540 26 96.2 36 ........................G. CTTCTATTTTATCTTGATACTTTAATTGTGGCTTTA 2122602 26 76.9 0 ......T.....T.......AA.G.G | ========== ====== ====== ====== ========================== ======================================== ================== 6 26 95.5 39 GTTAAGCATTAACATTGTACGGTCTC # Left flank : CAGAATTTATAGCAGGGAAAAAAGCATTGAATAATGCTGGTGAAAAAATGGGAGATTATATTGTAGAAAAGCTTTTAAATTATGGTAGTGGGAATAAACAAAATATAGAACTAAAAGTTATAACCACTGATTATAATAAAGTGAATATGGTAAATAATGCTTTACAAAATATTCGAGGAGTAAATTCAGCAAGGGTAAATAGTTATGATGAAGGTACAGCAACTATTGATATAAAATATTCAGGAACACCACAGAATATTTATAATCAGTTAATTCAAAATATAAATTGCAATCTTAAACTGCAACAAATTACGTATAATACTTTAACGATAGTAGTATATTAAGTTTTATTTGCCAGCCGAAAAAGTAAAAAACCTATAATATCAAGCATTAAAAAAGATAGACATAAAACTGAAATCGGCTGGTAAGATTTCTATTAAAGATTGAAAAATAAGGATATATAAGCTATAATGAAGAAAAAGAATATTGATTTTACTGCG # Right flank : GATTTGGGTTGTAGAATTATGCTAAATGTATTTATGATGAATTATTGATTAATATTAACAAGTGATGCTTAGCAGTAAAATGAAAGAAGACATAACTTAGATTAAAGTTATGTCTTTTTTTTATAAAAATTTTTAAAAACCGTGCCGAATTTTGGAAAAAGTAGGTGATATATAAAATAGAGACTAAAGAGGGTGATGAAAAAAAAATAAATATTTAAAGGTAAACTAAAATTTTGTGATTAAGATTGGAGTTAGTATTATGAAAAACAAAGCAAATGAAATCAAAACAAAAATTTGTATTCCAAAGGGATTTTTTGGCGGAAATTGCTCAGGTTGTCGGTATTGGGAAGAATACAATAGAGACTCAAGTGGCAGAGCATTTTGTAGTTATTATGATGATTGGTATTATCCATCAGAAAGACGAGGTTGCTTTGCTCGGAAGGAATAAAAGAAGATGAGTTTTTGCCAGCCGAAAAAGTAAAAAGCCTATAATATTAAAT # Questionable array : NO Score: 3.04 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAGCATTAACATTGTACGGTCTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.54%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 6 2123232-2123601 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT906446.1 Megamonas hypermegale strain NCTC10570 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 2123232 31 100.0 38 ............................... CGTTGGGTAAATAATAAGATAATCTTCAATAGTGTCGA 2123301 31 100.0 38 ............................... CGTTGGGTAAATAATAAGATAATCTTCAATAGTGTCGA 2123370 31 96.8 34 ..............................A ATGGAAAGTCAGCAGCAGATGTATCTGGGACTAC 2123435 31 100.0 35 ............................... AAACATTTAAATGTAGCTATAAAATAGAAATTCTT 2123501 31 100.0 38 ............................... AACATCTAGAACCTTGATGGTAGTAGCTATGCATTTGA 2123570 31 83.9 0 ...........G.......T...T...G..T | C [2123597] ========== ====== ====== ====== =============================== ====================================== ================== 6 31 96.8 37 GTTAAGCATTAACATTGTACGGTCTCGTCCG # Left flank : AGTTATGTCTTTTTTTTATAAAAATTTTTAAAAACCGTGCCGAATTTTGGAAAAAGTAGGTGATATATAAAATAGAGACTAAAGAGGGTGATGAAAAAAAAATAAATATTTAAAGGTAAACTAAAATTTTGTGATTAAGATTGGAGTTAGTATTATGAAAAACAAAGCAAATGAAATCAAAACAAAAATTTGTATTCCAAAGGGATTTTTTGGCGGAAATTGCTCAGGTTGTCGGTATTGGGAAGAATACAATAGAGACTCAAGTGGCAGAGCATTTTGTAGTTATTATGATGATTGGTATTATCCATCAGAAAGACGAGGTTGCTTTGCTCGGAAGGAATAAAAGAAGATGAGTTTTTGCCAGCCGAAAAAGTAAAAAGCCTATAATATTAAATATTAAATAGGCAGAAAACTGAAATCGGCTGGTAAGATTTCTATTAAAGATTGAAAAATAAGGATATATAAGCTATAATGAAAAAAAGAATATTGATTTTACTGCG # Right flank : TTCTGGTAGCTTTGTTTTAACAAATACGCTAAGCATTAACAATGTATAATGTAATTTAGATTGTAGAATAATGCTAAATGTATTTATGGTGAATTTTTGATTAATATTAACAAGTGATGCTTAGCAGTAAAATGAAAGAAGACATAACTTAGATTAAAAGTTATGTCTTTTTTTATAAAAATTTTTAAAAACCGTGCCGAATTTTGGAAAAAGCAGGAGATATAATATATAGAATAGATATTAAAGAGGGCGATGAAAAAATAAATAAATATTAAATTTAAAGGTAAACTAAAATTTTGTGATTAAGATTGGAGCTAGTATTATGAAAAACAAAGTAAATGAAATTAAAACAAAAATTTGTATTCCAAAAGGATTTTTCGGTGGGAATTGTTCAAATTGTATTTATTGGGAAGAATACAATAGAAATTCTGATGGTAGAGCATATTGTAGTTATTATGATGATTGGTACTATCCATCAGAAAGACGAGGTTGCTTTACTT # Questionable array : NO Score: 2.90 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAGCATTAACATTGTACGGTCTCGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.84%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 7 2131090-2131441 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT906446.1 Megamonas hypermegale strain NCTC10570 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 2131090 29 100.0 36 ............................. GCATGAAAGCCCATTTTATGATGAAGATGCTTTTGC 2131155 29 100.0 35 ............................. TAAAGTTTTTTCTATTGTTTCAAATTTAACCTCAC 2131219 29 100.0 35 ............................. TCAACATAAATCGGGATAAGATAGCCAGTGTCGAA 2131283 29 100.0 35 ............................. TCAAAAGAACCAAGTTTTCTTACTTGATTGAGTTG 2131347 29 100.0 37 ............................. ACCAGCTAAAGAATATTCTTCTTCACTCCAGCGAACC 2131413 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 6 29 100.0 36 GTTAAGCATTAACATTGTACGGTCTCGTC # Left flank : TAGAAGATGCAGACAGAATATTAGCAGAAAATAGACATAGCCATTTTCTTGATAATTACGCTGTAATGTTCGAGATTTAACAGATATTGAAACTATAGCCTGATGAAATTTTCATTGGGCTATAGTTTTATCAAAAATAATATTTAAGCTTTTATAAAATAAAAAAATCGTGCCGAATTTTAGAAAAAGTAAAAGATATATAATAAGAAGAGAAAAAGAAATATAAATTAGATTAGAAATAAGATTGGAGAAATTATTATGGATAGGAGATTTAAGCGGTAGAGTATATTTCAGATATTATGATGATTAGTATTATTCATAAGAAAGACAAGTTTTAAAATAAGGTAAAAATTTACCAGCCGAAAAAGTAAAAAGCCTATAATATCAAGCATTAAAAAAATAGGTAGAAAACTGAAATCGGCTGGTAAAATTTCTATGAAAGATTGAAAAATAAGGATATATAAGATATAATGAAGAAAAAGAATATTGATTTTACTGCG # Right flank : CATTGGTCGCAATCTGCTTATCCATGGGCAGTTGATTTGTTAAGCATTAACAATGTATAATGTAATTTAGGTTGTAAAATTATGCTAAATGTATTTATGGTGAATTTTTGATTAATATTAACAAGTGATGCTTAGCAGTAAAATGAAAGAAAGACATAACTTAAATTAAAGTTATGTCTTTTTTTTATAAAAATTTTTAAAAACCATGCCGAATTTTGGAAAAAACAGCAGATATATATAATAAGATAATGATTTAAAAGAGAGGAAGATATTTATGAAAAAATTATTGATGGCTTTAGCTTTAGCGATTGCAGTTTGTTTACAAAGTGGTGTTAGTATGGCTGCTACTGAAGATATGGCAAAAATAGATAGTATAGAAGTAAAAGAATTAGGATTAAATCTTATAAAAGTTGAAATGCCTTTGGAAAAAGGTTTTGAAAGTATTTATGGACAAGATTATGCACCACTTACAATTATTGTTTACAATGATAAAAGCGATA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAGCATTAACATTGTACGGTCTCGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 8 2137269-2137497 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT906446.1 Megamonas hypermegale strain NCTC10570 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 2137269 31 100.0 35 ............................... TCAAATACAAATAATCCTAATTTTACATTACAATT 2137335 31 100.0 36 ............................... AATACAAGACTTAACATTTAAAAGCGTCGGTAACGG 2137402 31 93.5 35 ...........................CA.. ACGTAGAATGAATTACGTTTTTTTCTCGCTTTTCG 2137468 30 87.1 0 .......C....T.............-.C.. | ========== ====== ====== ====== =============================== ==================================== ================== 4 31 95.2 36 GTTAAGCATTAACATTGTACGGTCTCTTGTT # Left flank : TTAAATAAAAAAATTAATTTAACAGATGCTCCTAGAGATTTACGATGCTTTGTGGATTTTAAAATCTTATTAGAACGATATTTCTTTTGTGGCCATAAATGGGCAAAACCTAAAATAATTGTTTTTAAAGAGCCTGAAAGTTATTTAAATGATACTTGGCAGGATTTATATGCTGAATTTGTTGTTTTATTGCAAAAATATATAATTCCTAATTTGATTATAAGAACAGAAAATAAAGATTTAATGGCTAAAATAAAACATTACATCAAAATTCATGATAGTATAGCAAAGGTTAACGTATATGAAGCCGTGAAAAATAATGATGGCTTTAATCTAAATAAGTTAATTGATTAATAAATAAAAATTACCAGCTAAAATGGATAAAAGCTTATAGATAGAGAACTTTTAAAAATTAATATTAGCTGGTAATTTTTTTATAAACCTTGAAAAATAAGGCTTTATAGGTTATAATGAAGAAAAAGAATATTGATTTTACTGCG # Right flank : TGAGTCCATTTATTGATATGATGTAATAGGCTGAATATGTTATTTGTTTTTTAGTGATGTTATTTTATTGATTAATATTAACAAGTGATGCTTAATTGCAAAGAGAATAAGAAAAGACATAACTTTAATATATTTTAAGGTTATGTCTTTTTTTATAAAAATTTTTCTTTTTTATGCCGAATTTTGTTTTTAGTGGTGGATATTATATATATAAAGAAAAAATGAGGTGAAAATCATGAAAGCATTATTTGAATTTGTATGGTTTCTTATTAAGGTTTGCTTAATGATATTTGCTGGTGTTGTTTTTGGTGGTATAGCTCATTTTATAATTGAAAGTGAGTTGATTTTTGTTATCCTTGGTTTGATACTGCTTTATTTCTTTGGCCCATATATTTTGGAGATTGTGTTAATGTATTCATTTGCTAAGGAGATAAAAAAGGAGCTTGATAAGTAAAATGGTAAAAAATACGAAAGGAGGTGAGTTAATGTAAATTTGTAAA # Questionable array : NO Score: 2.62 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAGCATTAACATTGTACGGTCTCTTGTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //