Array 1 379221-377114 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP044186.1 Salmonella enterica subsp. enterica serovar Cubana strain AR-0402 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 379220 29 100.0 32 ............................. CTGGCCGCGAGCGCCTGGTATACGGTTTATGA 379159 29 100.0 32 ............................. TAGCCGGGTGTTATGCGAGCTCGTCAGGGAGG 379098 29 100.0 32 ............................. CCAGCGGCAACCCGATCACCATCGAAGAAGAC 379037 29 100.0 32 ............................. CGATACGCATTAACCAGCACGTCGAGTCGGTC 378976 29 100.0 32 ............................. CCAGTTTGTTGATCACGTCTGCAACCTGGCTA 378915 29 100.0 32 ............................. TCGTGATCGACGAGGCCGCATTCCACGAGGCA 378854 29 100.0 32 ............................. ATATCGCTCGCTTAAAACTCTTAGGAAAAAAA 378793 29 100.0 32 ............................. TCATCCTAATTGTCAGCGTCCCCCCCACTGGA 378732 29 100.0 32 ............................. TGAAGAATCCAAACTCCGTGACTTTGAGAAAG 378671 29 100.0 32 ............................. AAATAGGTAAGGCTATGCGTCGCGGTGATAGC 378610 29 100.0 32 ............................. GCTTTCAAGTTATAATTGGTACACTTCTTAGT 378549 29 100.0 32 ............................. TCTTAATACGCGTGAGATCCCGAAATTTTTTG 378488 29 100.0 32 ............................. GATTGACTTAAAGATGAATGTAGAAAATATTA 378427 29 100.0 32 ............................. TGGGCGAAAGCATTTAATCGCGCAGCGGGCGA 378366 29 100.0 32 ............................. ACGCTGGCAACAGCCCCACACTCATCCGCCAT 378305 29 100.0 32 ............................. CTGTATGAATTACCCCTGCTGCCGGGTTCTTC 378244 29 100.0 32 ............................. CGCTTCATCGACAGCGTGTTGTCGCGGTGCTT 378183 29 100.0 32 ............................. GTAGCCTTCAGACACTTTAGCCAGGTTCCCTA 378122 29 100.0 32 ............................. AGCGAAAAAAAAGACGACGAACTCGTCACAAC 378061 29 100.0 32 ............................. GCGGAGAATTATATATCGGAATGTTACAGGAA 378000 29 100.0 32 ............................. GTCATTTTCTTGTTAATGGCGCTTGCATTAAC 377939 29 100.0 35 ............................. CTGTGTGGTCTGTGCATAACGGTGTAACAGAGGTG 377875 29 96.6 32 T............................ CTGGGAAGATTGGGCGCTTTCAATATCTTCCA 377814 29 100.0 32 ............................. AAAAATAGTCCTGAACGATAGCCCGCGCGGTC 377753 29 100.0 32 ............................. CCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 377692 29 100.0 32 ............................. CAAACAATGAAATTTTATTTGACAAATTGGCG 377631 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 377570 29 100.0 32 ............................. TTCCGGTCCTGCCCACTATTCGACAAAATCAG 377509 29 100.0 32 ............................. GCTGATATCCGCCTGATTGGTGATCTGCGTCG 377448 29 100.0 32 ............................. CTGGCGCAGGTTCGCCTTTCGGGCCTTTGAGT 377387 29 100.0 32 ............................. AATAAACGTCTTTTGCTAGGTAGCATTCTATT 377326 29 100.0 32 ............................. AGTTCGCCAGCGGTGCCCGCGATCTGGAGCTG 377265 29 100.0 32 ............................. TCGTTTTTTTTATCGGTGTGGTTCGGTCGTAA 377204 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 377143 29 93.1 0 A...........T................ | A [377116] ========== ====== ====== ====== ============================= =================================== ================== 35 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGACTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCTAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 397031-396454 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP044186.1 Salmonella enterica subsp. enterica serovar Cubana strain AR-0402 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 397030 29 100.0 32 ............................. CCTGCGTGCGTGCAACGGGTAACTAAGGGGAA 396969 29 100.0 32 ............................. TCCATAGTTGCCGTTTCAACGGCTAACACTGA 396908 29 100.0 32 ............................. GCTACGAAGCGCCGCTGGCCGTGGCCTATACC 396847 29 100.0 32 ............................. TGCCGAAACTGGTGACAGAAACGGTGCAAAAG 396786 29 100.0 32 ............................. TAACGGTTGCCGAGGTTCGCGCCGCTGTGGCC 396725 29 100.0 32 ............................. GTTTGCAGAGATTGAGCCGTTCCCCGCTGCTG 396664 29 100.0 32 ............................. CGCAATTACACTGACAATTCGTCAGCGCAAAC 396603 29 100.0 32 ............................. AAGGTTAGCGTTGTCATTGATCTGGTCGGCAA 396542 29 96.6 32 ............T................ AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 396481 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 10 29 97.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCAATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACATTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //