Array 1 245123-252831 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022424.1 Vitreoscilla filiformis strain ATCC 15551 plasmid pVF1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 245123 28 100.0 32 ............................ AGCACAGCGGTCGGTTCGGGCGATGGTGTGGG 245183 28 100.0 32 ............................ AACACCAACACCAACGCCGACACCAACACCGA 245243 28 100.0 32 ............................ TCGCGGATCGAGGACGGCGAGGACATTTGACA 245303 28 100.0 32 ............................ ATCAAGGCTGAAATCCTGAACGAGGGCCGCGC 245363 28 100.0 32 ............................ CGTTGGCCAGGCCAGCGTGTGCCGCAGCGTCC 245423 28 100.0 32 ............................ AAGAAAGTTAGCAAGTTTGCGCTCTGGACTGC 245483 28 100.0 32 ............................ TTGAGCAGTCTGACACCTGGGCACTCGCCGAC 245543 28 100.0 32 ............................ CAACTGAGCCCAGAGCTATTGCCGGGCCGGGA 245603 28 100.0 32 ............................ GCCCCGCAGACGCCACCAGCGCCAGCGCTGGC 245663 28 100.0 32 ............................ TTGAGGGTATCCCGTTCCTTGCGGCGCTTGTT 245723 28 100.0 32 ............................ TTGGAGCCGAGCCGTGTCGGCCTTGGTGCCGC 245783 28 100.0 32 ............................ ATGACCCGCTTGACCCGCAATCGCGCCAAAGC 245843 28 100.0 32 ............................ TTGGCGCAAGGCAGCCAAGCTGGCCGGCGTCA 245903 28 100.0 32 ............................ TTCGGCGGAATGCCATCTGGCATCCTGCTGTT 245963 28 100.0 32 ............................ ATCAAAAGAATCAGCGGTGGGCTTGCCCGTTT 246023 28 100.0 32 ............................ GAAAGAAAATCGTTGACGTAGAGCGGAACCCA 246083 28 100.0 32 ............................ AACGCGCCACCACGGCGCCCACGATCACCGAG 246143 28 100.0 32 ............................ TCTCCAGGGTGTGGCCGGGTGCGTCACACCAA 246203 28 100.0 32 ............................ AGCACAGGCGTCGCTACTGAGGCTCATGGCCG 246263 28 100.0 32 ............................ AGGCTGGCTTCCAGATCCGTGACGTGCTTGTT 246323 28 100.0 32 ............................ ATCCGCGAATTCATCAAGAACTACTGATCCAC 246383 28 100.0 32 ............................ ACTCAGTCACGTCCACTCAGTCACGTCCACTC 246443 28 100.0 33 ............................ CCGAAGCGATGGCGTGCCAAGAGATGGGGGAGG 246504 28 100.0 32 ............................ TGATTGAAGCCCGCCACTGCTGGTATCGCTAC 246564 28 100.0 32 ............................ TTGCGCACGGCACAGCCGGATTGCGCGCGCTG 246624 28 100.0 32 ............................ GTACTCATTTGGTGGTGGTGTTGGTTGGCAAA 246684 28 100.0 32 ............................ AAGTACACGCTCACCGAAGAGCAAAAGCAAAC 246744 28 100.0 32 ............................ TTGCCGAGCATGACGGCAAATTTCAACGTGCT 246804 28 100.0 32 ............................ TGGTGTTGTATGGCCCGCTCGGCACCGGGAAA 246864 28 100.0 32 ............................ ACTGGCCGCGTCGGATTCAACGGTGCCTGCCA 246924 28 100.0 32 ............................ GCTGAGCATCAGCCAGTGCGTGGCGCAGCCGC 246984 28 100.0 32 ............................ CGAATTCGTTGGCTTGCCAAGAGATGGGGGAG 247044 28 100.0 32 ............................ AGTCGCTCCGCCAAAAAATCGCGCAGGGCTGC 247104 28 100.0 32 ............................ TGGCTCCGAGTGTGGCCCGTCGTGTGGCCGGG 247164 28 100.0 32 ............................ TTGGGGTACACGCCGGCGCCCAGGCCGTACAA 247224 28 100.0 32 ............................ GTGTGGCCGGGTCTGGGCTGAGGCTCACAGAG 247284 28 100.0 32 ............................ GGTCAGTGCGCCCCTGACGTGGGCGAGCGCAT 247344 28 100.0 32 ............................ TGAATTCACGACTTTTTTGCTTGGCTATTGCA 247404 28 100.0 32 ............................ TGCCCGGGCATCTTGGAAGTCGCCGGCTCTTG 247464 28 100.0 32 ............................ ACACCAGCCCGCACGAACCAGAGTTGATGCTG 247524 28 100.0 32 ............................ CGGGGCTGAAAGCGCGTTTTTCGGTGCAAGAG 247584 28 100.0 33 ............................ ACTCATGTCCACTCATGTCCACTCATGTCCGAT 247645 28 100.0 32 ............................ TCTAGCGTCCGGCGTTGTGCTGTTGTTGCTGC 247705 28 100.0 34 ............................ CCGCAGCACCTCGCGAGACAGTTCGGGGGGCTCA 247767 28 100.0 32 ............................ GCGGGCAGCTTCGGCCTCGTCGGGACCGGCGG 247827 28 100.0 32 ............................ AAATATTTGGGGACGGCGTTTAGAGTTGCTGG 247887 28 100.0 32 ............................ AAAATGGTCGGGCAGGTGCTCCAGCCGTGTGA 247947 28 100.0 33 ............................ GGGTTGGTTTGCGTTGAGGAATTCAGCCGGGAT 248008 28 100.0 32 ............................ CTGCGATGGCTCTTGGCTCAGTCGGACGAGCT 248068 28 100.0 32 ............................ AGCACCAGCGCAATGATGCCGGCCATCCCGAC 248128 28 100.0 32 ............................ TCGCCGGGCAGCGCGATGTCAGCAGCGAGCGG 248188 28 100.0 32 ............................ AGAGCTCGCCCGACCGAGCCCCGGGTCATTGC 248248 28 100.0 32 ............................ ATTAGCCATTTCGACAATAACAGGGAATGCGC 248308 28 100.0 32 ............................ CGATCGGGCATGAGTGGACATGAGTGGACATG 248368 28 100.0 32 ............................ AAGCCCGCCGCCGCAGCATGCAACCCCAGGCG 248428 28 100.0 32 ............................ AAACGCACTCAGAGGGCGGGCTTCCCCTGGTT 248488 28 100.0 32 ............................ AGAAACACCACCAGACGACGACTGCGCTAATG 248548 28 100.0 32 ............................ GTTAACGTGCAGCGTTCGATTCACGGTTTCTG 248608 28 100.0 32 ............................ TCGGGCATCCCGTGGGGAGCGGGGGGGGGTTG 248668 28 100.0 32 ............................ ACATTGGCACGTCTTGGCCTGGCTCACGCCGG 248728 28 100.0 32 ............................ GAGTGGACACGCCCGAGTGGACGTGACGCGGC 248788 28 100.0 32 ............................ CTTTTCAGCCACGGCCGCGAGGAATCGGTACA 248848 28 100.0 32 ............................ ATCAGATCGCGCACCACCACGGTATCGCCCGC 248908 28 100.0 32 ............................ AAAATAGAGCCCTGGCAGCGCTTTTTGCTTTG 248968 28 100.0 32 ............................ AAGTCGGCGGCAGAGGCTCACACGCGGCAAAT 249028 28 100.0 32 ............................ TGGGCATCATCGGCACGTTGGCCAGCCGTACC 249088 28 100.0 32 ............................ GTAACGCGGCTGCAAAAAGAAAACCAACCATC 249148 28 100.0 32 ............................ CGATGGAACGGGGCATCTTGGGATATTGTGCT 249208 28 100.0 32 ............................ ATGTCCGCTTCAGGTGACGTCAAAGATGTGCA 249268 28 100.0 32 ............................ ATCGAGGTGATGAAGAGCCATGGGCTGGAGCC 249328 28 100.0 32 ............................ ACGCACCAGGGCGGATCACACGAGCCAAAAAA 249388 28 100.0 32 ............................ CGACAAACTCGCGCAGCTTGGCCGGTGTGGCC 249448 28 100.0 32 ............................ TGGGGGAATCGCACGTGTTCCGCACGTCGATT 249508 28 100.0 33 ............................ CAAGAAGAAACATTGAAAAGCGATGCGGAGCAT 249569 28 100.0 32 ............................ TGTTGCAAGGAGATCATGCTGCACCCCCTTTG 249629 28 100.0 32 ............................ ACCTTGTTGCCACAACCGCCGACGCCGTTGCC 249689 28 100.0 32 ............................ GCTTTAAAGATTGGCTATGTTGTTGTTTTTGT 249749 28 100.0 33 ............................ TCAGTTGAGGTTGCAATCGGTGCTGGGGAGAGC 249810 28 100.0 32 ............................ AGGATGACGCAGGCCGGGCGTGACAGGGGTCT 249870 28 100.0 32 ............................ GGTGAAAGTCACCGAAGGCAATCCCGGACTCC 249930 28 100.0 32 ............................ ACATAAGAAGCGCAACAAAAACAACAACATAG 249990 28 100.0 32 ............................ GCGAGACGCAGGCGTTGGAGGCGCGGCTGAGG 250050 28 100.0 32 ............................ TTTTGGCGAGCATCATCAATCAGCCGTTGGGC 250110 28 100.0 32 ............................ CGGCTGCGGGGAATGTTGGAGCGGTACGAGAT 250170 28 100.0 32 ............................ TGCTGCTGCTGTTGTCTCGCTGCTCGCCGTGC 250230 28 100.0 32 ............................ CGAGTGGACGTGATTGCCCGAGTGGACATGAA 250290 28 100.0 33 ............................ GTCCGCTCCACATGCTGCCCCCCTACCCCCCCA 250351 28 100.0 32 ............................ AGTCCAGCGGTGCCAGCGGGCAGGTGGCCCGG 250411 28 100.0 32 ............................ TCAAAAGAGGGCGACGCCGTTTGAATCTACAA 250471 28 100.0 32 ............................ GAGCTGACCAGCCGATCCACTGCTGACATTAC 250531 28 100.0 32 ............................ ATCAGCGCCGCCAGGCCCATGCGGCAGGCATC 250591 28 100.0 33 ............................ ATGACCACAGGCACCAGTTCCGGGCGGGTTTGC 250652 28 100.0 32 ............................ TTGGTGATGCCGAAAATGGCCGCAGCAATGGC 250712 28 100.0 32 ............................ AATCCCCGTACAAACGGGGCATCGTTGCATTA 250772 28 100.0 32 ............................ ATATACACCGACCGGTTCAACGTCAAACGTTA 250832 28 100.0 32 ............................ ACGATCGATTTGGCGTCGTCCTTGGCCAGCTC 250892 28 100.0 32 ............................ AGGATGGGGGATGGTTCCGCGGTGACAAAAGC 250952 28 100.0 32 ............................ GTCAGCACGGGCTGGCGCGGCTTGGGGTCAGC 251012 28 100.0 32 ............................ CAGCGCTTCGCGCACTGCTTGCAAGCTCGGGC 251072 28 100.0 32 ............................ ACAGAAGGCAACGCCCGGCAAGCCCTGAAGCA 251132 28 100.0 32 ............................ TTGGCGACGCGATCCAACAGGTATGGCTGCAC 251192 28 100.0 33 ............................ AGCGAGCCGGGCGTGTTTGTCGTCGGCACCGAT 251253 28 100.0 32 ............................ AGGCAAACGCGACGCGGTATTCGACGCGCCAG 251313 28 100.0 32 ............................ ACTCGCCAGGGCACCGTGATGCCCTGGGCGGC 251373 28 100.0 32 ............................ GTACTCGCGTGCGATCTGTGGCACCTTCATGC 251433 28 100.0 33 ............................ AGCATTGCGTGAGCATCACTGAGCCGAGACTGC 251494 28 100.0 32 ............................ ACTCATAACCGCATTGCAAAGGATACGGTCAT 251554 28 100.0 32 ............................ TGATCATTTCGCGCACCGCGTTGCGAGCGACG 251614 28 100.0 32 ............................ ATCGCGGCGAGGTGGTGCGGCGGGTACTTCAT 251674 28 100.0 32 ............................ AGGGTGGCAAAACTCCGAAGGCGCCAAGCTGG 251734 28 100.0 32 ............................ GCCAAAACGCTTGCGCACCTCGGCGGCCAGCT 251794 28 100.0 32 ............................ ACAGATCGCACGCGAGTACGGTGTCTGCCGCA 251854 28 100.0 32 ............................ TTGAAGCTGGCGGCGCGGCTCTTTGCTCCCGG 251914 28 100.0 32 ............................ GCTGGCCAGCGCTCGCAGTTGCATCCTGCCCG 251974 28 100.0 21 ............................ CCAAAGTGGACGGATCATTAC Deletion [252023] 252023 28 100.0 32 ............................ AAACAGCGGCAGAGCAGCACTCAACCGAGTAG 252083 28 100.0 32 ............................ AATGCGGCGGAACCGGTGGCGGCGCCGGAAGT 252143 28 100.0 32 ............................ AGCCGGGTGCGCAGCATGAGGCGCACGATCAG 252203 28 100.0 32 ............................ TGAAGGGGCAGGAATACACCATCGCTGGCCGC 252263 28 100.0 32 ............................ ACCAGACGACGACTGCGCTAATGCATATTCCG 252323 28 100.0 32 ............................ GTTTAATCTGGGTTTGCCGTCCGGCTGTCCGT 252383 28 100.0 32 ............................ CGAGCGCGTGATAACTCGTGTGCCGAGTTGTG 252443 28 100.0 32 ............................ CGTGCAAGTCCAGCAGGGCGCCTTGGCGCAAC 252503 28 100.0 32 ............................ AGAATCCATCCCGGCAAGCGAGCCAGTCAGCA 252563 28 100.0 32 ............................ AGCGTCGGGGCCAGCCCCATCAGATCAATCCA 252623 28 100.0 32 ............................ AGTAGCCGCGAGATTTGCAGCCCGTTCAGGTT 252683 28 100.0 33 ............................ CACTCGTTCAGAAGGCCCTTCATTTCGTCCCAC 252744 28 96.4 32 ...A........................ ATGTTCGCCAAACTGAAGCTCTGCGCCATTGC 252804 28 96.4 0 ......................C..... | ========== ====== ====== ====== ============================ ================================== ================== 129 28 99.9 32 ATTCACTGCCGGGTAGGCAGCTTAGAAA # Left flank : ACGCCTTGGCTGCGCGGTGTGCGGGATCATCTGGCGCAAGCACAACCGACACCGCAACCCGTGCCGCTGGAGAAATTGCAGGGCTACCGGGTGGTGAGCCGGGTGCAGGTTCACAGCAGCCCGGAGCGTCAACGCCGTCGGCTGATGCGCCGTCAGGGCGTGGATGAGCGGGAGGCGGTGCAGCGCATTCCCAACGATGTGGTGCAGCGCTGCGATCTGCCCTTTGTGTCACTGGCCAGCGCGAGCACGGGGCAGGTATTCAAGCTGTTCGTCCGGCATGGCACGCTACAAGCGCAGGCGGTGGAGGGTCGGTTCAATGCCTATGGACTGAGCCAGCAGGGTGCTACCGTGCCTTGGTTCTAACGCCAGACCCTTTTTTTGCGGAGGTGCGTAGCTGCCTTGTAAATCAAGCACTTACGCATGCCTGTGAAAAAAGGGTTGTACAGAGCGAACCAGGAAAAGTTCTTTAACAATCAATGCGTTAAGATGGAAGGCGTCTG # Right flank : ACACCAGCACATGAAGCGCAGCGCATCCCCTTGAGGGTGAGGGGAATGCAACACATGGGACGAAATGGGGCGCGGCGTTTTCCATCACACCCGCCAGCTCAACGAGCGCGGCTTGATGGTGCAAGCAGCGCTTACCGCGTCCCCATCACCTCACCCATGCGCACAGGGGCGGTGGGCTCCCAACGTGTCGTGAAACGCAAGCCGCTGCCCTGAGGGAACAGCATCACCACGGTCGAACCCAGTAAAAAGCGGCCCATTTCGGCGCCTTGGGCCAGGGTGATGGCCTGATCGCCTGCATAGTCCCAGCTCCGAGGCTCGGCGCTGCGCGGCGGATTGACCACACCATGCCACACCGTGGCCATGCTCCCCACAATCGTGGCACCCACCAACACCATCACAAACGGCCCACTGTCGCCCTCAAACACGCACACCACGCGCTCGTTGCGGGCGAACAGCCCCGGCACCCCTCGCGCCGTGGTGGGGTTGACGGAGAACAGCGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCACTGCCGGGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 435645-442815 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022423.1 Vitreoscilla filiformis strain ATCC 15551 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 435645 29 100.0 32 ............................. AATCGTCAGGGGGTAGCACGCCCCGAGGTCTG 435706 29 100.0 32 ............................. AATCGTCAGGGGGTAGCACGCCCCGAGGTCTG 435767 29 96.6 32 ............................T TCGATTCTGGAATTCAATTTCGGCGGCTATTT 435828 29 100.0 32 ............................. CGCCGTGCCGAACTGCGGCGCCGCCGCGTGCC 435889 29 100.0 32 ............................. AAGGGCGTGCTCACCTCGTCCGGCCCGCCGGA 435950 29 100.0 32 ............................. CATCCGGTCATGTACCGGTGGGCGAATCGCCT 436011 29 100.0 32 ............................. TATTTGCCCAAGCTCTCGCCTGTTTTTGCTGT 436072 29 100.0 32 ............................. CCCAGCGCCAGCAAGAGGCGCAGGCCACGCCG 436133 29 100.0 32 ............................. GAGCCGCCCAAGCAGGCGCCGCAGCCATCGGC 436194 29 100.0 32 ............................. TGACAATCTCCGCCATGACAGACACTTCTTCC 436255 29 100.0 32 ............................. ATAAAAAAACTGCGTCTGACTGAAGTGGGTCA 436316 29 100.0 32 ............................. CACAGGCGCGCAAAATAAATCGGGTTGAGCAA 436377 29 100.0 32 ............................. ACGCTGAACGACGCCCTGCGTGCTGTGCTGCC 436438 29 100.0 32 ............................. TTTGAGCGAGAAACCCGCTCAGTGCCGGCTGC 436499 29 100.0 32 ............................. GGGGTGTCGTACATTGTCAAAACGGAGCGCGG 436560 29 100.0 32 ............................. CGGAACGTCGTGCAGTTCGATGATCCGGCACC 436621 29 100.0 32 ............................. GGCAAGGAGTTCGCCCACCAGTGATGATTGAC 436682 29 100.0 32 ............................. GTGCTGCACCTGATGATAAGTGCTGCACTTTG 436743 29 100.0 32 ............................. ATTAGCCAGCGCCAGCGCCTCAGCATCCGACA 436804 29 100.0 32 ............................. TGAACAACAGGTTTGTCAAGACTCTGATATCA 436865 29 100.0 33 ............................. CTCTCTACGGCCCGCTTGCGGCGCACCGCTATC 436927 29 100.0 32 ............................. CCCGTACGCGGAAAATAGACCGTGCCGGTTTC 436988 29 100.0 32 ............................. CCCGGGCGCGCATCTGGCGCATGCGCTTGGGG 437049 29 100.0 32 ............................. TTATCAACCGTCGCCAAAGGATCAAAGGACGA 437110 29 100.0 32 ............................. CGAGGGCGGCTAGATCACTTGAGCTGGGTGAC 437171 29 100.0 32 ............................. CATTGATGCCCAACGCTGACGTAACCGGCCTT 437232 29 100.0 32 ............................. ACAGTGGACGGGGCGGGCTCCGGCGTAGATGC 437293 29 100.0 32 ............................. CCGTCCGCATCATGCTCAACCCCGCCCACCCG 437354 29 100.0 32 ............................. CTTATGGAGCACGACAGGCTGACCCTTGAGCC 437415 29 100.0 32 ............................. GACGGCAACCATGATTAAAAACGGTCTGGAAT 437476 29 100.0 32 ............................. AGCGCGACGCCATCCGCAAGGCGCATGATGCG 437537 29 100.0 32 ............................. ACGACAAGCGCTTGCGCCAAGGCGGTCGCAAA 437598 29 100.0 33 ............................. CTCGAAAATGCAACGCAATCGAATTCGACCACC 437660 29 100.0 32 ............................. CGATCATACTCGTCGGATCCCCGTTTGACCTG 437721 29 100.0 32 ............................. TCGTGGACTAATGCTTGATTTGTCTAACGCAT 437782 29 100.0 32 ............................. ACGTGGAGCTGTCTGGATCGCTGGAGGCCCCG 437843 29 100.0 32 ............................. GTGGCGCGAGCGATGCGCAACCTGCACGGGGT 437904 29 100.0 32 ............................. GCCATTAAGGATGCATTTGCAAACGGGGCCGG 437965 29 100.0 32 ............................. ATGCGGATGTGTTCCGGGCGGTCTCGCGGGCC 438026 29 100.0 32 ............................. CAAATCATCGCCGAAGCCAAGGCCGGTGGCTA 438087 29 100.0 32 ............................. CGCGAAGACGACAAGCGCCTGCGCGAAGGCGG 438148 29 100.0 32 ............................. TTTCGGCGGCATCATTAAATGGCGTATGGAAA 438209 29 100.0 32 ............................. GCCGGAGTAATTGGGCTTGTAGCCACACCGAA 438270 29 100.0 32 ............................. GTGTTGTACAGCCATTGCATGGCCGCTTGCCC 438331 29 100.0 32 ............................. ATGACTTGCAAAGGGCGCGACGGGCTTGCAAT 438392 29 100.0 32 ............................. GATTTAATGTCATGAGCGATTCGCAGATGTCA 438453 29 100.0 32 ............................. TTGAATCAAGCGTGGAGCCTGAGGATTTGGCT 438514 29 100.0 32 ............................. GTCATGATCTTGCTCGATCCGGCGGTCGAGTT 438575 29 100.0 32 ............................. TTGAAAACTTGAACCGCATTACTCATCATCGC 438636 29 100.0 32 ............................. CGTTAATGCTGGCTTCGCGCAGCCTGACAGCG 438697 29 100.0 32 ............................. GGCCACCGATATGGCCCGCGAGACCGCCCGGA 438758 29 100.0 32 ............................. CCTGACTCTGCGTGCAAGCGGGTCGTTTGAAT 438819 29 100.0 32 ............................. TATCCGGCAGGGCGGGCGGCGATCCCGCTGTA 438880 29 100.0 32 ............................. AATTGCTGGAGGCGGCATGACGCACGGCGGCA 438941 29 100.0 32 ............................. CAACCATGTTCGGGAAACTTGACAGCCTCAAC 439002 29 100.0 32 ............................. CCTTAGACCTGCTTTCGATGAACAACACCAGT 439063 29 100.0 32 ............................. TTCAAGAGCCAGCCGCACCTGGCGTGCCGCGT 439124 29 100.0 32 ............................. CAATACGTAAATCTACTGTTTGTTTACAAGGA 439185 29 100.0 32 ............................. GATCGGCGAGCATATCCGTCGATGGGTGCTTG 439246 29 100.0 32 ............................. ACCCCCGGCTACCCGATTAGCCAGCGCCAGGA 439307 29 100.0 32 ............................. GCTTCAAAATTCAAGGCTGCGCGGGCCGTGCA 439368 29 100.0 32 ............................. TCGACGATCCGCCGTAAACCGTTTGAATGCCC 439429 29 100.0 32 ............................. CCGGAAAAACTCGCTCATGATCGACTCAAGGG 439490 29 100.0 32 ............................. TGCTGGTGGTGTTCGGGCGCGACATCGACCAA 439551 29 100.0 32 ............................. GCGGTGCTGGCAGTGGCGTCAAGCAGGGCGAC 439612 29 100.0 32 ............................. ACGGGACAGTCGAGGAGGATGTCGACCAGGTC 439673 29 100.0 32 ............................. CCTACGGCGGCGCCAATGGCGATTCATCTGCA 439734 29 100.0 32 ............................. GTCAGCGCGGCCTTGATGGCCGCTTTGGCTTC 439795 29 100.0 32 ............................. GTCATGCACGACACTGACGGTGCCGGTGGCGC 439856 29 100.0 32 ............................. CGCCTGAAGCGTCCCCATGCCGATTTCGGCAC 439917 29 100.0 32 ............................. CCCTGGTAGCTTGGCTCAGTGAGCTGAAGCCG 439978 29 100.0 32 ............................. GATATGTTGTCATGAGCGATTTACTTAAACAT 440039 29 100.0 32 ............................. CGTACCGAGCCGCCCAGGCTGGCGTGTCTGAG 440100 29 100.0 32 ............................. CTCGGCGGATTGGGGTTGTAGCGATGATCGGC 440161 29 100.0 32 ............................. CCGGCACCGCAGCCATCGGCGCGAGAATACCG 440222 29 100.0 32 ............................. TCGATCGTCATTGACGAGCCGGGCGACCCTGA 440283 29 100.0 32 ............................. CAGGTCGCAGCGACCCAGGCATCGGCCCAGGC 440344 29 100.0 32 ............................. CAGATGCTCTGGCCGCAGCCGCGCCGGCAGCG 440405 29 100.0 32 ............................. CCCGTGCCGGGCTTGTCGGGTTGAACGGCGGG 440466 29 100.0 32 ............................. GTCGAAGGATCGAAGAAACTCGAACTTATCCA 440527 29 100.0 32 ............................. CCGGATGAGTGGGTAAAATCAAAAGCAGGGAC 440588 29 100.0 32 ............................. ACACGCGCTGCATCTTGTGGCCCCTGGATTGC 440649 29 100.0 32 ............................. CGATTGAAGCTGCGCTGCTGGCGTCCGGTGAA 440710 29 100.0 32 ............................. TAGCCGTCAGGGCGCGAGACAATCCCGCTGTA 440771 29 100.0 32 ............................. AATAAGACTGCAATCCGCAACGCAACACCAGT 440832 29 96.6 32 ............................C AGGCCAGTTTGCAAAATGCTGGAAAATAACCC 440893 29 100.0 32 ............................. CCGGCGGCGATTGCGTCGGCCTGAGAAAATGT 440954 29 100.0 32 ............................. ACAAAACTGCTCGGATTTATCCCGCAAGAGTC 441015 29 100.0 32 ............................. TCCTCAGTCGGGCATCCTCAAACGCCACGCCC 441076 29 100.0 32 ............................. GTCATTGCGGGTACGGCACGCGCCGGGCGGAT 441137 29 100.0 32 ............................. TCGCAGGGCGTCTCGCATGGCGGTTGTGGTGA 441198 29 100.0 32 ............................. TCCCAGCAAAACAACGGGCAGCCCCCAAAAGC 441259 29 100.0 32 ............................. ATGACGGCCAAGCCTGCGCCTCTTGACATTGA 441320 29 100.0 32 ............................. TAAATGGAAACCTCCGCCGGCATATGGCACTT 441381 29 100.0 32 ............................. ACCGCATGGGCATTTACGCCACGGCAGTGCAG 441442 29 100.0 32 ............................. GCCACAGGGCGCATTGACTTGGCGGTTGCTGC 441503 29 100.0 32 ............................. CCAAGATGAAGCAAGCCGATGACAAGGCCAGC 441564 29 100.0 32 ............................. GCCTCGGCAATGCCGACAAGCAAGTTCGCATC 441625 29 96.6 32 ............................A GCACCCCCAGAGTGGCGGCTAGGGCGAATATC 441686 29 100.0 32 ............................. TCCTGTGCGTCCGGGAATTTCAAGTCAGCATC 441747 29 100.0 32 ............................. TCCTTGGAGCGCGAACTGGGCGACGCTCGCAA 441808 29 100.0 32 ............................. CATTGGTGCCCGTCAGTGTAGTGTCGCGGTAC 441869 29 100.0 32 ............................. GCGCAGCGGCGATGACTGCGGGGCAGCTCGCC 441930 29 100.0 32 ............................. ACCCCAACAAATACGCTTACCGAGTATCGATC 441991 29 100.0 32 ............................. CCCACCAGCCGGCTCAGGCACCGGTGCCGACT 442052 29 100.0 32 ............................. TCGATCCAGCTCACTGTCGAGCTAGACGCCGG 442113 29 100.0 32 ............................. GTTGCGTTGAGGGCTCACGGCCAGCGCTCGCC 442174 29 100.0 32 ............................. TGCTGTGGATTTCTCCCTCTGCTGTGGATCGT 442235 29 100.0 32 ............................. CAGGCTGACACGTTCGCCCACCCGTCCCGCTT 442296 29 100.0 33 ............................. CAGTAAAATGGAATCGGAAAATGGATGCAGTGC 442358 29 100.0 32 ............................. CCCCCTCAAATCGATCTGGACATAGCAGCTCG 442419 29 100.0 32 ............................. TGACCGCGCTGAGAAATATGGAGCGGCGGGTT 442480 29 100.0 32 ............................. ACGCTGGATGAGCTGATGCGCGAGCGCGAGCA 442541 29 100.0 32 ............................. CCCGCGAACTGCAAGCGCGGCTCGCCGCAGCT 442602 29 100.0 33 ............................. GCTCTTGAGGCTCAACGCGCCGCCCAGCGCCGC 442664 29 100.0 32 ............................. GGCGGTCGGCGCGGGACTTTCCTTTTTGTGGA 442725 29 100.0 32 ............................. CAACTGCAAGCCAAGATCAAAAACTTGGAGGC 442786 29 93.1 0 .........................G..C | C [442811] ========== ====== ====== ====== ============================= ================================= ================== 118 29 99.9 32 GTGTTCCCCACGGGGGTGGGGATGAACCG # Left flank : ATCATCCCTGACATTGAAGCGATTTTGGCGGCGGGTGAAGTGGTGCCGGCGCAGGCGCTGCAAGGGGTGGTTGGCCCGGCCATTCCGAACCAGGAGGGCGTGGGGGATGCTGGTCATCGTGCTTGAGAATGTGCCGCCTCGGTTGAGGGGGCGCATGGCGGTGTGGTTGCTGGAGGTGCGTGCGGGGGTGTATGTGGGCAACTATGGCCGCAAGGTGCGGGAATACTTGTGGGAGCAAGTGGAAGAGGGGCTGGAAGATGGCAATGCGGTGATGGTGTGGCGCAGCACGGCAGAAGCTGGATACGAGTTTCTGACGCTGGGCCCAAACCGGCGCATGCCGGTGGACTTGGACGGCGTGCAACTGGTGAGTTTCTTCCCCCCAACCGCCCCGGATTCAGACGCCTGATGCGGCTCTTTAACAATCTGTTTGGGAGGGTCTAAAAATCGGTAGATTTTTGAGGGGTGAAATTTGTCTTTGGAATCATTGAGATAGGATTGGT # Right flank : CGACGATTACCCCCTGGTTCGTCTGGTGCCCAGCAGCCTGGCGCCCGACACGGTGTTACCGCGCCGCCGCATCGAGCTGCTGATTTACTTTGGCCAGCCGGCCAACGAGTCCGACCCCGGTGGCCTGGAAGCTGTTTGCAGCCAATGGCCAGAGATGGAAAAAGCGCTCATCAACGCCTGCTACCAGTGCCCCGGCATGATCTGCCTATGCCAAGAAACCATCACCGATGAAGACCGCGTGGCCAGCTACAAGCTGCAGGCCCTACGCGTGATGGTACGCAGGTGAAAGGTGTAGACTCCGCCTGCCGGCGCGGGTCATCAGGCTGACTCGGCCCCAGCTCTCGGGCTGAGGATGAGCCGACCAGGGTCGCCAACCTGGCCCACCGGCGCTCTACCGAATACGAACCGCCCCCTTGGGCGGTTTTTGCTTTTCGTTGTAGATCAGCGAGAGAAACCACGCCTCGGTTCCGCTCGCATCGATTTTTAGGGCCGCACGGTAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGGGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.10,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1553505-1554849 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022423.1 Vitreoscilla filiformis strain ATCC 15551 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 1553505 37 100.0 32 ..................................... TTCCCTCTGACTACTAGCGCAATCTATTATTT 1553574 37 100.0 32 ..................................... GAAATCCGCTCTCGGACTTGGCCTTCTTGGCT 1553643 37 100.0 32 ..................................... ATTTGTGTTTTCACGCCTTGGGGTGGGGAAAT 1553712 37 100.0 33 ..................................... GTAGGAGTTTTCTATGGGAGCTCCACTCCAGCC 1553782 37 100.0 30 ..................................... AGCCTCAGCTGCTCTCAACTGCGTTTCAAC 1553849 37 100.0 32 ..................................... GCCGTGCTGAAACTGTAACAAAGCGGTTAGCA 1553918 37 100.0 31 ..................................... ATCGATTGCAGCTCTCATGCTGGCGCTGGCA 1553986 37 100.0 32 ..................................... ATCCCATACGATGTAGCCGACGACCCCCACGG 1554055 37 100.0 31 ..................................... ATTATGCCGGAAAGTTTTTCAGCGTCGTCAT 1554123 37 100.0 32 ..................................... AATAGTAATGAAATCACCGCTGGTGCTAACGA 1554192 37 100.0 31 ..................................... AAAGTATCGTGTTTGGTGCGCGAGCCAGTGT 1554260 37 100.0 33 ..................................... ACGAATTCCGGCGGCGGCTCAATCGCAGTGGTC 1554330 37 100.0 34 ..................................... ATTATTGCCAGCAATAATGTCAAATGTGCTAAAC 1554401 37 100.0 32 ..................................... CGCCCGGATGGCGCGTAACCACCAGAATCTTG 1554470 37 100.0 32 ..................................... TGCCCAACGCTTGCGACAGCCAGCATGTTGTC 1554539 37 100.0 32 ..................................... CCGGTGAAAGTGGCCGCTGCGGCCACGTCGGA 1554608 37 100.0 31 ..................................... ACTCCAGCTCATTTCTCGTTTCTGAGATGTC 1554676 37 100.0 32 ..................................... ATCACGCCGTAGTAGGCGCGATAGCTCTCAGT 1554745 37 100.0 31 ..................................... TTCAGATCGCGCAGCACCGGGGCAATCACAT 1554813 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================== ================== 20 37 100.0 32 GTCTGACTGGCTTCCCTGGCTTTGAAGGGATTAAGAC # Left flank : CGCAAGCTGCGGTTGCCGGCGCGGACGGTGTTTGGTTGTTTTGCTGAGGCGCTGGCGTTGCACCGGGCGATTTTCACGGAGCACAACCCGCTGATGCTGGGGCGGGATTGGTTTGATGTGAATCCTGCGCAGATGGCGTTGGTGGCGGGGACTTTTGAGGACATGGGGCTGGGTTTACCGGAGCCGCATTGTTTTGGGCAGCCGGTGGGGTCATTTGATTTGTCTTTGCCGGAGGTGGGCGCGGGGGCGTTGGCGCTGCCGTACCGGACGCCGGCCAATGCATACTGAGGGGTGAGGGGGGACGGTGTGGCGATGAAGCGTGCAGAATGGCGCTTGGTGTGCGGCGTGTGTGAGGGTGGGTCGCTGAAGTGGGTTACACTGGCTGCTGCCAGTCAAACGTTGGCATGAGAGATGCTTTAGCAGTCAGCTCGATGTTCGGAAAATTTTTTGTCAACCCCCGTTGTAAGTGCTTGTCACACAAAGGGTTTTTCGAACGAAGT # Right flank : CCCTGCTCGATCGAGAGCCGATACCGGTATCCGTCTGACTGGTTTCCCTGGCTTTTTAATCCCCCCATCTCCTTTGGGAAAAGGGGCAGGGGGATTCTCCTCAGTCCACCGACTGAGCCAGCACCCGCAAAATCTCCTCCCCATACGCCGCCAACTTCTTCGACCCCACTCCGCTGATGTGGGCCAGTTCGGCCAAACTCTTCGGGTGACTCTGGGCCATTTGCGCCAAAGTGGCATCGTGGAACACCACGTAGGCCGGTAGGTTGTGCTCCCGCGCCACCTCACCCCGCCAAGCCCGCAACGCTGCATACCGCGCTTGGCCCGCCGCATCCAATGTGGCCGCCGAAGCCGGCAAGCGCGGGGCGCCGGACACGTCGCCCAAACGCGCCGTCCTGGCGGCCCGCGTGCGCTGGCGCGATCCCGCCTCACGCGCTTGGCGCAACACCACCGGCACCTCACCCCGCAGCACCGCCCGGGCACTGTCGCTCAGGCTCAGGACG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGACTGGCTTCCCTGGCTTTGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.40,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 3 2202005-2200453 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022423.1 Vitreoscilla filiformis strain ATCC 15551 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================= ================== 2202004 37 100.0 32 ..................................... AAAACCGCTTGGCTCCAGTGGAGCCGCCATTG 2201935 37 100.0 33 ..................................... CTGGACGACCCATTCATCGACCCACGCGCCGCC 2201865 37 100.0 31 ..................................... CGAAGCGCCTCATCCTCAGCGGCCTCCCAGA 2201797 37 100.0 33 ..................................... ATCACTCCTCGTCATCTTCGTGGGTGACAATCA 2201727 37 100.0 32 ..................................... AACTTGGTCATGGTGGTGTCAGTCGTCGCCAG 2201658 37 100.0 32 ..................................... ATGCCAGCATTTTGGCCATCACTTCCTTGGGG 2201589 37 100.0 31 ..................................... TAGTAACATACTGAGGTGCAGTAGCGGCGTT 2201521 37 100.0 32 ..................................... TTGGTGGGCAACTCGTTCGGCGGCGCTTTGGC 2201452 37 100.0 31 ..................................... TTGCCCACCATCACGTCAACGGCTGGAAGCT 2201384 37 100.0 32 ..................................... GAATCCAACGAGGTGTTCAGCCCCTTGGTGGG 2201315 37 100.0 33 ..................................... AAATGTCACCACATGCTCAGGCGCCCCCTTGCG 2201245 37 100.0 31 ..................................... GGACTAGACTCAATTGTTACGATGCGCGGCT 2201177 37 100.0 31 ..................................... AGCACAGCCGAATCGATCACCATGTCCTCGT 2201109 37 100.0 32 ..................................... AATTCCCCCACCTGTATCATCCGAGTATAGGT 2201040 37 100.0 32 ..................................... AAATACCCGTGCATCACCAAATACCCGTGCAT 2200971 37 100.0 31 ..................................... GTTCATCATGATCTTAGCTCATTTCCTGTTT 2200903 37 100.0 33 ..................................... CTATTCAGCGCATTCGTGAGCTGCTCCATTGTC 2200833 37 100.0 31 ..................................... TCAATAAGTGCTTGAGTGCGTGCATCAAGCA 2200765 37 100.0 33 ..................................... CTTACAGGAAGCACCGATATATACCCCAATGAT 2200695 37 100.0 32 ..................................... ACCGCAGCCGTCCCGACGCGGGCAGCTTTGTC 2200626 37 100.0 31 ..................................... CCTTGAGGAACCCAGCCGTCAAGGCCGTACA 2200558 37 100.0 32 ..................................... TCTTTCGCTGACTCGTCGCCTGCAATCTGGGT 2200489 37 81.1 0 T......G..T......................TTTG | ========== ====== ====== ====== ===================================== ================================= ================== 23 37 99.2 32 GTCTGACTGGCTTCCCTGGCTTTGAAGGGATTAAGAC # Left flank : AGTTGTTATTTAGCGCCGGAGCCGATGGCGGTTTTATTATTATTGGCGCGTCGGCAGGTGGCGGGTTTGGCGCCGTTGCCGGCGCCGCCGAAGGAGGCGGGTGATTTAGACTTGGCGCAAGCGTATTTAGGGGCGTTGCGGGATTGTGGGGGGCCGTTGCGGGATTTGGAGCGAGCGGAGCGGGCGGTGAGGAGTGGGATGGATGGGTCGCAGTGGTCGTCGAAGTTGAGTCGATTGAGGCGGGTACTGGGGGAGGAGTTGGGGCCGGCGGGGCGGCAGTTGATTGATGACGGGGGTCGGCGTTCGGTGAGGAACCGATACAGTTTGGTGCTGCCGGCGAGCCGAATTCAGCTTGAACCGTGAGGTGGTTGTAGTACACTGGCCGCCGCCAGTCAGACATTGGCATGAGAAATGCTTTTCCAGTCAGCTCGTCGTTCGGAAATTTTTTTGTCAAGCCCCCTTGCAAGTGCTTGTCACACAAGGATTTTTTCGAACGAAGA # Right flank : CGCTCACTGAACTGACGCAATCAACCTCGCATTCAAAGGGAAACTTTCATGAAATACGCACCGGCCTCCCTCGCCATCCTCGCCGCCAGCTTGGCCCTGCCCGCGCACGCCATCGAATTCTGGCACTCCAACACCGTTTGGGCCGGCCAAGGACAGTGTTCCGCCGTCTTCACCTTCGACAGCGGCACCGAAGACACCAAAAACCTCCAAGTTGCCGTCAACCTCCTCGATAAAGCCGGCAAAAAACTCGCCTCCGGCACCCTCGAAGTCCAACAGTTCGGCCAATTCTCCGCCAACCGCTACGCAGACGCCTTCCTAGAAAGCGAAGAAACCTGCGCCGACGATCTCATCATCACCGTCGCCAAAGCCACCGCCATCATCAACGGCAAACGGGTCGATCTGCTCAAAACCAAAACCCTCACCACCCGCGAATTTAAACCTTTTAAAATTCGCGTTGGCAAATAAACCCCTTTCGATTATCATCATAGTGGCGTCAATTT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGACTGGCTTCCCTGGCTTTGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 4 2206740-2206103 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022423.1 Vitreoscilla filiformis strain ATCC 15551 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================= ================== 2206739 35 100.0 33 ................................... ATGCGCCCTTCCTTCGGAGATGACAGGATTGTG 2206671 35 100.0 32 ................................... ACATCGCCAACCCGGAAGGTTCAAACCCGTCT 2206604 35 100.0 30 ................................... TTTCCCTTACCAGGAGAAGCTCCCATGCAG 2206539 35 100.0 31 ................................... TGCCGGCGCGGCCGGCCCCCGACTTGATGTC 2206473 35 100.0 32 ................................... CCTCGGTGAGGCGGCGCAGGAACTCCTCCCCG 2206406 35 100.0 32 ................................... CCGACCACCCCAATTGCCCACGCGCGTATTCG 2206339 35 100.0 32 ................................... CAATATACATCTTTGACACTGTACACTGATCC 2206272 35 100.0 32 ................................... TGTCAAGGACCCATGGCCCTTAAGAACAACTT 2206205 35 100.0 32 ................................... CGCCTGATGATGATTGAGTAAGTCCTCATCAC 2206138 35 94.3 0 ................................T.T | T [2206107] ========== ====== ====== ====== =================================== ================================= ================== 10 35 99.4 32 GTTCAAGCTCCCCGGTTTCTGAAGGGGATTAAGAC # Left flank : GTTTGGAGGATTCTGTCGCGCACGGTGGGGATGGCGAGGGTACGGGTGCCGCCGTTCTTTTTGGGAATGGGGACGTATCGCAGGGGTTGGGGGCGATATTGCCCGGAGAGGAGTTCGGTTTTGAGTTGTTGGAGGTGGTGGAGAATGTGGCGGCTGAAGTTTTGGATGGTTTCGCCATCGCTACCGGGTGCGCCGGCGTTGGTGCGGACGTGATCCCAAGCTTGCAACAGGTTTTGTTCGCTGAGGGCGAGGTCGAGGAAAGAGGCGGTGTGCATGTGGCCCATGATGCACAGAGGCGGGTGATGGATGCACGGACGGCAAGGTTGCGGTGGTGGTTTGAGAGTGTGTTATCATATTTTTGGCAGCACGTTGATTTATAAGGATTTTTTGGTGTTTTTGGGGGTCAAGCGAGGTGAATTTTTCCGGTTGTTGTCAGGAAAGTCGGTCTTGTCCGCAAAACGCTTGTAAGTGCTTGACTTTAAAGGGGGTTACACGCTAGA # Right flank : GCAAAATAAAAGCGGGGGCTGATTTGTTCAGCCCCCGCTTTTATTTACGCCGTCACCCTCACCCACGCGGCGCCAAATCCAACGCCCGGCTTAAATCCACCAACCCCACACCCAACCCCCCCTCCACCACCTTCAACCCCAACGCACCCGCCAACATCGCCGGCAACCCCGCCATCCCCTGCCGACCATGCACCACCTTCACCCCATACTGGCGCGCACGCTCCAACACCCCACGCTGCCACTCCGGATGCAACGTCAACGGCACCAACAACCACGCCTCACCCAACGAGCCCCCCACATGCGCCTTCAACGCCTCCAGACGATTCAGCACCTCCTGGCCCGTCCCGCTCGAACGGTGTAACTGCTGCCCCGCCTTGCACTCCACCACCCACATCCGGTTGCCCCACACCACCGCCAAATCCAACTCCTGGTAATCCACCCCTGCCTGCAATTGGCTCCCCTGCGGACGCAACCGCACATTCACCCCCCATTGCCCCAGC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAAGCTCCCCGGTTTCTGAAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.50,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 5 2211069-2209576 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022423.1 Vitreoscilla filiformis strain ATCC 15551 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================= ================== 2211068 35 100.0 32 ................................... GCGCTTTCTGCCTGAAGATCCAGGCAAGTGCG 2211001 35 100.0 31 ................................... TTCCTCAGCGGCTTCTGTGCCTTCTTCAAGA 2210935 35 100.0 31 ................................... CGTCAAGGCCTTGGTGGCGACAGTAGGAGAG 2210869 35 100.0 30 ................................... TCTCAGTTTGAAGGACTTTCGCAAGTTCTT 2210804 35 100.0 31 ................................... CAGCCTGCTCAGCTGCCGCAGCGGCCTGAGT 2210738 35 100.0 31 ................................... TATGTCGCCAAACTGGAGGGAGAACTCCTTC 2210672 35 100.0 32 ................................... TTTTTTGGCAGGGGGTTGGTGGAAACACTCCA 2210605 35 100.0 30 ................................... CCGTTCCCCCAGTCAATGCCTCGACATCGG 2210540 35 100.0 32 ................................... CGTCGAGCTCTGCATGTGTGAGGGCTTCTCGC 2210473 35 100.0 32 ................................... CCGGAGTCTGTCAGGTTGACTGGTTCCTCGCA 2210406 35 100.0 32 ................................... CAATCTCAGCATGCAGAAATCCGTCCGCCTTC 2210339 35 100.0 32 ................................... CTTCCCAGACTTCTCCCGGGATCTGGTCTTCC 2210272 35 100.0 31 ................................... AATAGCTCATTGGCACGGGGGCTCTCCAAGC 2210206 35 100.0 30 ................................... TTGGCGAACTGCGCTGCATCTGCAGCATCG 2210141 35 100.0 31 ................................... TCAGCCCCGAGGGGTCTTTCTCCTCGTCCCA 2210075 35 100.0 31 ................................... CGAGACCGGAGCCCGTCAGGTCGACTGGCTC 2210009 35 100.0 31 ................................... AAGCTTGGCGAGGTCCTCCACGAATTGGGTG 2209943 35 100.0 31 ................................... AGCCAGGTGTGATCCACGGTGGCCGCATCGA 2209877 35 100.0 31 ................................... ATCCACGGTGGCCGCATCGGCCGCCTCAAAC 2209811 35 100.0 32 ................................... TGTCGCCGACTACGAAGTGCTTCGATTTCGGC 2209744 35 100.0 32 ................................... GATCAAGGAATGAAGCGGTGGATATCCTCACC 2209677 35 97.1 33 ......G............................ GCAATAATTTCATCAAACCGACGTGCCTCTTCC 2209609 34 91.4 0 ......G........................C-.. | ========== ====== ====== ====== =================================== ================================= ================== 23 35 99.5 31 GTTCACACTCCCCGGTTTCTGAAGGGGATTAAGAC # Left flank : GTGGATTTCGTCGGGGAGGAAGGGCCCAGACTCGTCGGAGACGAGGGCGTAGAGGGTTTCGGTGACGATGGCGGGGGAGGTGCCGGAGACGCACACCAGGATGCGTTTGGGGCGCTGGGGGGAGGTGGAGGCGGCGTCGAGGGTCATCGGGGGGTCATCCTGTCTGGGTTGGTGGATTCGCCCCCTATTGTGTCGTTACCGACTGAGGAGGGGGCTGAGGTCTGGAGTTAACTGTGACATGGTGATGAGGGGTTCGGGGTTGACTGCAAGCTTGCGGTTTAGGCTGTTGGCATGAGGTGTGTGGCAGGCTGCGCTGCCATGGTTGGCGGGGTGGTTGTTGAGAGTGGTTCTCAAATTCTTGTCAGCAGCTTGATTTCAAAGGACTTTTTGGCATTTTTGGGGGGTGGGTGAGGTGAATTTTTCCGGTTGTTGTCAGGAAAGTCGGTCTTGTCCGCAAAACGCTTGTAAGTCCTTGACTTTAAAGGGGGTTACACGCTAGA # Right flank : AACCACCGCGTGGGTCGGGGGTTCGGGGCTGGGAAGCCCTAATTGAATCGCGTCGGCGTGATCCGCTTCACACAACGGCCACGCACGCCATTGATCCTCCACCGGATCAATCAAACCATTCAACACCCCACACAATACCCCCCACTCCCCTTCCCTCAATAACAACTCATACACACTCTCCTGCACCCTCTCCCCATGATCCAGCAAACATTGCACCACCCGCCGCCGTCGGCTCGGACTCGCAATGTCATAACTCACCACCCATCGCCTTTTCATCTCCCCTCCCCCTCACACCACATGGTGCGCACACGGCCCCACCCGCCGCCCCAATCCATTCACCTTCGCCGCCCATAAACACCGCCGACAAATCGGCACCAACCACACCCGATCTTGCGCCGGATCGATCAGCCCCGATAAGTCTCCCACCACCTTCTCTAATTGATCCGCCCGCCAGACACACTCAAAAACACTCTCCAACACCCGATCCCCCCAGCCCAATA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACACTCCCCGGTTTCTGAAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.50,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 6 2223779-2223398 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022423.1 Vitreoscilla filiformis strain ATCC 15551 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== =============================== ================== 2223778 38 100.0 31 ...................................... GTTCAGAGTGAATCTTGAAAGCACTTTCTTC 2223709 38 100.0 31 ...................................... CGTTTCGCCGACGATGGCTTGGCCCTGCTGG 2223640 38 94.7 30 AC.................................... CAGCAATCGCGGCGATGCTGGCGCACCGCT 2223572 38 100.0 30 ...................................... ACAGACCTCTCCGCTATTTAAACTCTATTG 2223504 38 97.4 30 .....................................C CGGCTGATTGACCTGGCGCGTGCGGGTGGT 2223436 38 97.4 0 .................................G.... | A [2223400] ========== ====== ====== ====== ====================================== =============================== ================== 6 38 98.2 31 GTCTGACTGACTTCCCTGGCTTTGAAGGGATTAAGACA # Left flank : GCCGAACACGCTGCGGTAAAGCGCCCCCAGCCCGCCCGGAGCGGGCAGGGAGAGATCGTCCAGCAGGCGATGGGTGAGTTCGAGGTGGAACCACTGCATTGCGGGCAGAGCCAAGCCGGCGGGGGGATTGCAAGGCGGAGGGGGTGGGGTGTCCCGGGTCATGGTGACGAGGTGAGGGTGAAGGGCGTCCGCCTCATTCTGGCGTTAGATTGCAGAAATGCAGGAGGAGGGGCGCACTTTGTCACAGCCTGGGTGGATTTGGCGGACTCTGCAAGCTTGCGGTTTTTGACGGGTTTGGCGGAAGGATGGCATGCTGCGCGCGGTTTTGTTGGGGCGGCGGCACGGGGGTTAGGCTGTGGGCCTGCAAAGATGTGCTAAAGTTTCCTCAGTCAGTCAGACATTGGCATGAAAAGTGCTTTCGCAGTCAGCTCGTCGTTCGGAAAAATTTTTGTCAACCCCCGTTGTAAGTGCTTGTCACACAAGGGTTTTTTCGAACGAAG # Right flank : CGTCAGATCAGGGGTGCGGGGGTGCATTGCCCCCGCTTCGGACATAAAAAAGCCCAGCAGCCGTATTTCGCGGCTGCTGGGCAAAACATATCCGTCCGACAGGCTTCCCCATTCATCAATGCAGGACGCCCGCCTCCCCCAAATGAAACCGTTCAGAACCGCGTCGGGCGATTATCCTGATCCGGCAACAGCGGAAAATTGCACACCACGTCATTGTGCAGAAACAGCCCCATCTCCCGGGTGCGGGTAAGCTGGGGCACGATGCGCGTTTCCAGCATGTCCCGAATCTGGCGGCCAAACTCACCCTGACCACAGGCATCCATCTGGACTTTGCGCACATCCCGCAAGTGCTGCTCCGCCAATTCAATCATGGCGCCAATTTCCCCACCCAGCAAACCCCGCGTGTGCTCGAACGCACTGTGCGCCGCACGAATCGAAATCGCCCCCTGCTCACGCTCCACATCAATGCCCGCCAATTTCTCGACCCGCCCAATCCCCGC # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGACTGACTTCCCTGGCTTTGAAGGGATTAAGACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.63%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 7 2236068-2238445 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022423.1 Vitreoscilla filiformis strain ATCC 15551 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================= ================== 2236068 36 75.7 31 ...-G.G.GG..G....AA.............T.... CTGTTATCGCGGCGGTGCGAGACGTATGCGC AT [2236082] 2236137 37 100.0 33 ..................................... TTTCAATACGCACAGGTCGAAGAGACCTGGCAA 2236207 37 100.0 32 ..................................... GGAAACACCTGTGATGGAGTCACATACATCCA 2236276 37 100.0 31 ..................................... CTGTGTGGGATGAAACCGCTGACCGTTGGCT 2236344 37 100.0 31 ..................................... CCTTGCAAGCGAGAAAATGCCCACGGCATAA 2236412 37 100.0 33 ..................................... GAAGATGGATGCAACCATGCATCTGAGCAGCGT 2236482 37 100.0 32 ..................................... AGTGATCAACGACCCGACGATGAATGACATTG 2236551 37 100.0 31 ..................................... AGCGCGGCGAGTGATCATCGACGCACCCAGT 2236619 37 100.0 32 ..................................... GGATCACAGTGCCGCGCAGGCGGCCAGCGACT 2236688 37 100.0 32 ..................................... GGATCACAGTGCCGCGCAGGCGGCCAGCGACT 2236757 37 100.0 32 ..................................... GGATCACAGTGCCGCGCAGGCGGCCAGCGACT 2236826 37 100.0 32 ..................................... TGGCTGACCGGCCCCGGGCGATCGATCATCGA 2236895 37 100.0 32 ..................................... GAAAAACCGCGAAACAACCCACACCCAGAACC 2236964 37 100.0 32 ..................................... ATTACACGTTCACGCTGGGCATCAAGGGCTAT 2237033 37 100.0 32 ..................................... GGAAAACATCGATGCGTTCATGCGTCTGTTCC 2237102 37 100.0 30 ..................................... AAAGACCACCGGCTCATGAACATTCCCGGC 2237169 37 100.0 32 ..................................... CGCGAGTCGGAAGTGGTGGGGTACAACCTCAT 2237238 37 100.0 32 ..................................... CGCCTTGGAGGAGGCCATCGCGGAGGCTTTTA 2237307 37 100.0 32 ..................................... TACGGTTGCCTATTCCAAAAACAATCGTTTAT 2237376 37 100.0 33 ..................................... CCAACTGGCGCGCATGCACGGCAAAGACGTGCT 2237446 37 100.0 32 ..................................... GACAGCAAAATTTACGAAACCAAGTTCGACTT 2237515 37 100.0 33 ..................................... TGCTCCAAGTGCAGTGCAAAACACCACGGTAGC 2237585 37 100.0 31 ..................................... CTCAACGGAGCCAATTATGTCGTCTTTGATA 2237653 37 100.0 31 ..................................... GGAGCCCTAGGTTCAGGGTGTCGGCTTCGGG 2237721 37 100.0 32 ..................................... TAAATCGATCGGAACAACGTGCCGTGTGATGA 2237790 37 100.0 32 ..................................... GTGCCGGCGAAACCGGCTACATGGCCGCCCAC 2237859 37 100.0 33 ..................................... CCACAGCACCGCGATGGTCATGGGTGATCCGGT 2237929 37 100.0 32 ..................................... GGGGAGGACATTCATCATATCCGCGCAGCATT 2237998 37 100.0 32 ..................................... TACTACCGGTATGAGATGTGACCTCATAGCAC 2238067 37 100.0 32 ..................................... TGTCACGTGGCCGCACCAACCGAAGCCGAGAC 2238136 37 100.0 32 ..................................... AGCATTGAAATAGATGATGGCGACATCATCAG 2238205 37 100.0 31 ..................................... CCGACGCCGCGTGGGAGGCGGCCGGTGGGGC 2238273 37 97.3 31 ...................................C. GCGCAGCATTCGCCAACCCCCATAAAGTGGC 2238341 37 94.6 31 ...................................TT GTATCCGAGCAACTCGAAGAATATGTCGGGC 2238409 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================= ================== 35 37 99.1 32 GTCTTAATCCCTTCAAAGCCAGGGAAGCCAGCCAGAC # Left flank : CGCTGAATCCCCAGGTGCAGGAGTGGACGGGCGGCTGGCTGTTCAATTTCTCGGGTGTGGAGATGGATCTGAACCCTTATGCGGCCAAGGGCCAGCGTGCCGCCAACATTCGGGTGTTGGATCGTGCCAGCCAGCAATGGCAACCTCTGGACCCCGAACGCACGTACAGCTACGCCTCATACCACTACGCGCATGACCCGGATCTGATCAACGTGGTGCCGGTGAAGAACGTGCAGATTCTCAAGGACGAGCAGGGCCAGCCGCTGGATGGGGTGGAAGTGGTGGTGCGCTACCTGCAATCTCTGCCGAACCAGACCGCCAGCCCGGTGCTGAACCGCATCCGCCTGACGCAGCCTCTGCCCAAGCCGATTTCGGCGAGCCCCGAGGTGCAGCCCTGGCGTGGGGCGGGGCGCTGAAGCTGATACCAAAAAGGCCACACCGACATGGCGGTGTTGGCCTTCGGTCAAGGGGGCGCTAGCCCCCTTTTTTTCTGCCTGCTC # Right flank : CTTCGTCCGAAAAAACCTTTGTGTGACAAGCACTTGCAAGGGGGCTTGACAAAAAATTTTCCGAACGACGAGCTGACTGCGAAAGCACATTTCATGCCAATGGGGTCTGGCTGGCGAGGCGCAGTCTAGCACACCTCAGCGACCTTCTGGCAACCACATGCCCTCCGGCACCAACGACCGGCCCAGCCGCACCACCGCATCCGGCCCCGAACACCGGTACGCCCGCAAATCATCATCCTCCGCCGCCAACGCCGCCAATTCATCCATCAAAATTTTCATCCCCTGCGCACTCTTGCGCACCTCAAATAAACTATATTGCAATGGAATCCCCACCCCCTTTAACCGCTTCAAAATTTTCGCAGAGCGGCGCGGATCATGAATATCATAACAAACCCACCACACCGCCACATCATGATCCGCCATTTTAAAACCCCCTCACCACGGCTCAACCTCATCCCCAAAACCATCATCAAAAAATAACTCCCCCTCATCCCGCAACT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCCCTTCAAAGCCAGGGAAGCCAGCCAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 8 2498811-2502595 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022423.1 Vitreoscilla filiformis strain ATCC 15551 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 2498811 36 100.0 37 .................................... GAGCGCGAGGCGCAGCGGCTCAGGCGCCGCAGTTTGA 2498884 36 100.0 35 .................................... GAACAGGAACGGCACGCCGGCGGCGGCGCACTGGT 2498955 36 100.0 34 .................................... CCGACAATGTTCAGTCCAGCATTTGCTGCCGCCA 2499025 36 100.0 33 .................................... AGCCGACTTGTCACGGCATCACCTCAAGATCGG 2499094 36 100.0 34 .................................... CCGCAGGAATCAAGCATCCCGCTCCAGCCGCGCA 2499164 36 100.0 34 .................................... ATCAAAGCCAAGGGTTCGCGGGTGACTCTCACGC 2499234 36 100.0 34 .................................... GACAGATCCTTCCGCCTTGCGCATGCCGTGGCGC 2499304 36 100.0 36 .................................... CGCGTGATGCGTGGTATGTGTCAGCAGCAGCTACGC 2499376 36 100.0 38 .................................... CAGGTAGGCGTCTGCGCGCTGCTGGCGCGGGGTGGGGT 2499450 36 100.0 33 .................................... TCGGTGGTGAAAAAGTCGCTGGACGAAAAGGAC 2499519 36 100.0 38 .................................... CGCCCTCGCATCGGCTGAGGGTGGCTGGCTGGACGTTT 2499593 36 100.0 35 .................................... TGCTTGGACTCAATTTCCTTGATGAAGAAATCTAT 2499664 36 100.0 34 .................................... GCGGATCGTCCGCCATGTCCCGCCCACCACGATG 2499734 36 100.0 33 .................................... ACTTGTGGGAGGCGTACTCGCCGCACCAATAGT 2499803 36 100.0 35 .................................... ACGACGTAGCGAACCGAATCAGCGCCAAAAGTGCT 2499874 36 100.0 33 .................................... GGGGCGCACTTGTTATGTCTCTCAATCCGAGGC 2499943 36 100.0 36 .................................... TCTCTCCTCAAACTGACCCTGCCACAAATCCTAATA 2500015 36 100.0 34 .................................... TTAACTACTCAACAAGGTGATGCGATGGCAAAGA 2500085 36 100.0 34 .................................... TTTTAGGTAACTGCGCATCATTCGAGACGCATAC 2500155 36 100.0 35 .................................... TGCTGCTGGTGGTGTTGGTGGTCGTAGTAGTCCCC 2500226 36 100.0 34 .................................... ACGGTGGCGCCCAGCGTGCAGCAGCGCCTCGAAC 2500296 36 100.0 35 .................................... AAGTCCATCGGCTACGCCTGCATGGGCGTGGTGTC 2500367 36 100.0 34 .................................... AAGGCCATGGGCTACGCCTGCATGGGCGTGGTGT 2500437 36 100.0 35 .................................... TCGCCTTCGACCAGCACCACGGGCCGGCCAACATC 2500508 36 100.0 33 .................................... ACCTGGGGATTCAAAGACAAAGGCGGCGGCGGC 2500577 36 100.0 35 .................................... ATCAGCTCGGCATCGGATCGGTTCCGGGCCTCGTT 2500648 36 100.0 36 .................................... CCCTACGTCCTCGACCACGATGCTGGCCGTCGCGTG 2500720 36 100.0 33 .................................... CGTTTGCCTGCTGCTACGCGCTACGAAAAGCCG 2500789 36 100.0 35 .................................... AACTGAAAAATTAGTAACAGGTGGTGCGGATACTC 2500860 36 100.0 33 .................................... TCGCTACGGTGAGCCTTGGCGAGATTTGACGGG 2500929 36 100.0 36 .................................... TGGTTTGGCCTCGGCTGAATTGATCGACACGGTCAG 2501001 36 100.0 34 .................................... ACGCGCCGCCTCTGGCATGGCAGTGATGTCGCCA 2501071 36 100.0 34 .................................... ATCGCCGCGCTGCCGAGCTGGCCCGCCAACGTGT 2501141 36 100.0 33 .................................... AAGCACCGCTGGCCGGCATGCTGTCCATGGTGG 2501210 36 100.0 35 .................................... TCGGGCAGGCACCAGCCGCAATCGTCGTCCCAAAC 2501281 36 100.0 36 .................................... GTGGGCACCACGAACGAGGCGCACTACCTATCCGAT 2501353 36 100.0 35 .................................... GAGGACGCCACCAAATGCGCGCACCTGGCCAACAG 2501424 36 100.0 37 .................................... CGGCCCGAAGCTGGGGCGCCGTCAATGCCAAAAGGTT 2501497 36 100.0 36 .................................... CAAGCGCGGTTTGGTGTCAACCCGGCTCGACATGAT 2501569 36 100.0 33 .................................... TGTTGTATCAACTACATTACAATACAACACTAC 2501638 36 100.0 37 .................................... GGCGCTGGGGCGGGTCGGTGAGATTGTCACTTGCCTG 2501711 36 100.0 36 .................................... ATCTTCGACCGCCTCAACGGATTCACCGCAAGACGG 2501783 36 100.0 37 .................................... CGGCACAACCCATGTCCCGCCAGCCCCAATAAAGACA 2501856 36 100.0 35 .................................... CCACGGCATGGTAGTTGGTGGCACATGGCGCACAA 2501927 36 100.0 33 .................................... TCTCGCGTGCAACTGTGTCAGTGGGTTGCCGGC 2501996 36 100.0 35 .................................... CATCGGCGCCCAGCAAGAGCCCAGCGTGCTCATCC 2502067 36 100.0 34 .................................... AGTGCCAGTTTGGGCGGGTCAAAATCTTTGATTT 2502137 36 100.0 35 .................................... TCGCCTAAATTTGTCGGCGTGGACACTGTGCAAGT 2502208 36 100.0 34 .................................... CGCAGTGACAAAAGCGGTACAGATTACGGTGCAG 2502278 36 100.0 33 .................................... CCCCCCGCCATCGTGGCAGCAATGGACGCCCTC 2502347 36 100.0 34 .................................... GCGTTCATTGCCGTCGAGAAATCCACCCCGCACC 2502417 36 100.0 36 .................................... TGGCGTGGCTCGCAGCTCGCGCACAAGCCAACGCGG 2502489 36 100.0 35 .................................... AGCATACCCACAAATATACCCACATTTACCCAAAT 2502560 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 54 36 100.0 35 ATTTCACCCGCTGGGATGGCGGGTGTGGATTGAAAC # Left flank : AGGCAGAGTTTGAGGAATTGGAACGGCGATTGTTGGATGAGATTGATCTGCAATTGGATGTTTTGCGGTTATACCGCTTACCGGCGACGCGCGGCATGGTGGTGAAAGAATATGGGCAGTTTAAAGCGACGGATTTTGAAGGGCCGTTGGTGATTTAGTGCTATCATGCCGGGCTTGGAAGTGGATGCCGAAGGATTCTTCTCAAAGCTTCAAACACCATTGAAACGGTGTTGTGCTCTATAACAATCAACAACTTAAGCTGTCGTTGTTGTGGGCAATTCGGTTTGGAGAGGTGTTCTGACGTGTTGTCTTCTGAGCCCAAGCGCGAACCCTGAGTGCTGGCCTGTGGCCTAGGAGGTTCGCGCTGTTCGTAAGTGCTTGTCGTGTCATGCTTTTTTGGAAGCGTTGTTGTAAAAGTGCTGTTCACGAGACAGCTTGCGGTTCAGGTCCGCGCAAAACGCGGATTTTTCCGAGCCCCGACACCAAGTTACAAGCGAACT # Right flank : CATGGAAATGATGTGCCAGAAGTAGAACCAAACAAGCAAGTAAAAAAACGGCTTTAAACTCTCTCACCATGTCCGATACCATCGCCCACAGCCCATACTCGCCCCCTCAAAACAGCGCAGGCGAATTCCCCGCCCTGCGCTGGGACATCTTCTGCCGCGTCATCGACAACTTCGGCGACATCGGCGTGTGCTGGCGCCTCGCCGCCCAATTGGCCGCCCGAGGCCAGCGCGTGCGCTTGTGGGTGGACGACGCCCGCGCCCTGGCCTGGATGGCCCCCAACGGCGCCCCCGGCGTCAGCGTCCACGCTTGGCCCACCGACGCCGACACCTTCCCCTGGCCCACCCCCGGCAACGTGGTGATCGAAACCTTCGGCTGCGACCTGCCCGACGCCTTCATCGCCCGCATGGCCCACGCTGCACAAACGGGCCCAGCGCCGGTATGGCTCAACCTCGAATACCTCAGCGCCGAGGAGGACGTCGAACGTTCGCACCGCCTGGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCACCCGCTGGGATGGCGGGTGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.60,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : NA //