Array 1 154903-154538 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV803501.1 Streptococcus sp. HMSC076H08 Scaffold121, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 154902 36 100.0 30 .................................... AACCTTGATAGGCGTACTGTATGGATTCCA 154836 36 100.0 30 .................................... AAATTGTTTTTGTTGTAATATAAAGTCGAC 154770 36 100.0 29 .................................... CTAGCATGGCACAAAAATAGCGTTGGAAT 154705 36 100.0 30 .................................... CTACTGTATTATCTGAAATAGTATCGTTTT 154639 36 100.0 30 .................................... AGATATTTTTTGATAAATTCTAGAGCAATT 154573 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : GCTGTTTCGAATGGTTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCTGTGCTGTTTCGAATGGTTCCAAAACAGAGGGGAAAATATCAATGCCGAATGCTGAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAAATTGTTTTTGTTGTAATATAAAGTCGACGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTTAATAACTGTCCGTTTTGCCATTTCTTGCGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGCTGTGCTGTTTCGAATGGTTCCAAAACTCTCGGGAAATGCAACTGATGCTGCAATCA # Right flank : GATGGTACAAAATCATTTGTTGGTACTGATGTTTTAAAGCTGTGCTGTTATTATGCTAGGGCACCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCGATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCAAGATTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTCTTTGTCACTAATACTTGCAAGCTTACAAGGAAAGTAGTGGAGAACCTATCCATAATCAACTAACAGCTATGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 155292-155058 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV803501.1 Streptococcus sp. HMSC076H08 Scaffold121, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 155291 36 80.6 30 NNNNNNN............................. AGAGGGGAAAATATCAATGCCGAATGCTGA 155225 36 100.0 30 .................................... AAATTGTTTTTGTTGTAATATAAAGTCGAC 155159 36 100.0 30 .................................... TTAATAACTGTCCGTTTTGCCATTTCTTGC 155093 36 86.1 0 ...............................NNNNN | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 91.7 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCTGTGCTGTTTCGAATGGTTCCAAAACGAAACTTCGATTAGTTTGCGTACTCGCTCAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACGAAGTATACTACGGTTAGAGATTGGCTCAAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAAGTATTGTTGCCCCTTACCAGTAACTTTTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAAATTGTTTTTGTTGTAATATAAAGTCGACGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTATCGCAAATGAAACGGGCGCTTTTGCACTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGCTGTGCTGTTTCGAATGGTTCCAAAACTCTCGGGAAATGCAACTGATGCTGCAATCAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAACCTTGATAGGCGTACTGTATGGATTCCAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAAATTGTTTTTGTTGTAATATAAAGTCGACGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACCTAGCATGGCACAAAAATAGCGTTGGAATGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACCTACTGTATTATCTGAAATAGTATCGTTTTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAGATATTTTTTGATAAATTCTAGAGCAATTGTTTTAGAGCTGTGCT # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 3 155680-155446 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV803501.1 Streptococcus sp. HMSC076H08 Scaffold121, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 155679 36 100.0 30 .................................... GAAGTATACTACGGTTAGAGATTGGCTCAA 155613 36 100.0 30 .................................... AAGTATTGTTGCCCCTTACCAGTAACTTTT 155547 36 100.0 30 .................................... AAATTGTTTTTGTTGTAATATAAAGTCGAC 155481 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAATGGTTCCAAAACAAACGATACCTGATTTCTGTATTCTGTCGTAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACACACAATTAAACATAAAGAAGTGCTTATTTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACACAAACCTCTAATGGATAATATAGAACAAAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTCAGGAGATTGTGTGTACTCACGAATTTTTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACATTAGTCCTGTTGTTATGATGGATGATTATGTTTTAGAGCTGTGCTGTTTCGAATGGTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCTGTGCTGTTTCGAATGGTTCCAAAACGAAACTTCGATTAGTTTGCGTACTCGCTCA # Right flank : TATCGCAAATGAAACGGGCGCTTTTGCACTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCTGTGCTGTTTCGAATGGTTCCAAAACAGAGGGGAAAATATCAATGCCGAATGCTGAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAAATTGTTTTTGTTGTAATATAAAGTCGACGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTTAATAACTGTCCGTTTTGCCATTTCTTGCGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGCTGTGCTGTTTCGA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 4 156200-155899 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV803501.1 Streptococcus sp. HMSC076H08 Scaffold121, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 156199 36 100.0 31 .................................... AAACGATACCTGATTTCTGTATTCTGTCGTA 156132 36 100.0 30 .................................... ACACAATTAAACATAAAGAAGTGCTTATTT 156066 36 100.0 30 .................................... ACAAACCTCTAATGGATAATATAGAACAAA 156000 36 100.0 30 .................................... TCAGGAGATTGTGTGTACTCACGAATTTTT 155934 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 5 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTAGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : ATTAGTCCTGTTGTTATGATGGATGATTATGTTTTAGAGCTGTGCTGTTTCGAATGGTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCTGTGCTGTTTCGAATGGTTCCAAAACGAAACTTCGATTAGTTTGCGTACTCGCTCAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACGAAGTATACTACGGTTAGAGATTGGCTCAAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAAGTATTGTTGCCCCTTACCAGTAACTTTTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAAATTGTTTTTGTTGTAATATAAAGTCGACGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTATCGCAAATGAAACGGGCGCTTTTGCACTGTTTTAGAGCTGTGCTG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //