Array 1 2897528-2897927 **** Predicted by CRISPRDetect 2.4 *** >NC_016640.1 Arthrospira platensis NIES-39, complete sequence, *** SEQUENCING IN PROGRESS *** Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 2897528 35 97.1 40 ....T.............................. GCTTATGTACAAGCATCGGCTAATTATAGTCCGTGCTTTG 2897603 35 100.0 37 ................................... CCATTGTCGATTCCGACAAAAAACCTTGTTCTTATGA 2897675 35 100.0 35 ................................... TAGAAAAGGTCGGCGATCCGACCAAAAAATACTGC 2897745 35 97.1 37 ..................G................ GCTGGTCAATCGTCTGTCAATACCAGCGGTAATGTTG 2897817 35 100.0 41 ................................... CTTGAACAATTACTGCTTGTTCAGAAGCGCAAATCATACCA 2897893 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================= ================== 6 35 99.0 38 GTTTCCATACGTTTAACTTTCAAAGAAGTTTAAAG # Left flank : AATCGGTGCAAAATCTTTGGGTTAAGACTCTTTTGGAAGCTTATTGCAAAGACCTTGAAATAGGTGCAATTGGGTATGCTGATGGGGTTGAGACGGTCTTACTAAACACCCCAGCGACACAGTGGGAGAGTATTTTAACAACCTTGAAAGGGCTGAACCAATCACTTTGGGGCAGACAGAAAATTAAACAGTTATTGGAGCGACGGGAGAAACTTAAACAATCTCCTCTGGAGGAACAGGATTTTGATGAAATTTTTCGAGACTATCAAGAAAAAATAGAAAAGTATATTGCCCAACGCAATCGCCGCTCCTATTGAAAAGCGATTGAATTTTTACAAAACCTGAAATCCATTTGCGATCGCACAGGTCAGCAGTCTCTTTGGGATTGTTATATTGAAGTTTTGCGATCGCGTTATGCCAATCTCAAAACTCTATGGCTTGAAATTGATGCTTCAGATTTACAGTTAAAATAAATCATTTTCATTGATTTCAGTCAACTC # Right flank : GAGTGCCGAGTTGAAACCCTTGCTCTGACTGTACTCTAGCACTCAAATTTGTGGGGGTCAAGCAAACACCCAAATTATTGAGACATATTTGCAATAAGACCCCAGAAAAAATGGCTCAAACCTTTACTCTGACTGAGCTTTGTGTGGGTCAACGAAATCATCAGGGTTTCAGCGATTCTTCAACCCCCACAATGATATTTACCTTACATCTTTGTTAGCATGGGCCGATAGACTTCCCGCTCTCCCATCAGGCAAGAAATATACTCCCAAACCTGCAACTCCAAACACCGATAATAACTAACCTTGTAACCCGTATGGGGATGAGTGGTTTTCAAAGAAAGCTTATCGTGCCAATGCTTCAGATATTTCTTGAGAGCATCGGAATAAATATAAACCCCACCCCGTTCGTCACTTGGGGTAAAATCTTCCGGGGTAAAAATTCCCGAATTCACCAGATAGATAACGAGAGAATCCACCACCGGGGCGCGAAACTCCTCAAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACGTTTAACTTTCAAAGAAGTTTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 2 2904080-2903090 **** Predicted by CRISPRDetect 2.4 *** >NC_016640.1 Arthrospira platensis NIES-39, complete sequence, *** SEQUENCING IN PROGRESS *** Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 2904079 35 100.0 38 ................................... ATCAATGATGGTTACTCCTGGGTTTCCGCCAGGCAAGA 2904006 35 100.0 38 ................................... TGTCCATTCCTTGGGCACTGGTTTCTGCCCTTGCTCTG 2903933 35 100.0 41 ................................... GCCAGTAGTTTGGATCGCTATGGCAGTAGTTACCAGTACTA 2903857 35 100.0 39 ................................... TACGGTATTTTCTAGCATCTGTTTAGATACTGTAAAGTT 2903783 35 100.0 37 ................................... CAACCTTTATCGCTGGTCCAGGCGGAAGGTGGAGAAT 2903711 35 100.0 41 ................................... CGGACTATAGTTAGCCGATGCCATCTCCACAGGAGAGAAAA 2903635 35 100.0 38 ................................... CTATTTATTTCGTAAATTTTAGCGGGGCAGACCCCGCT 2903562 35 100.0 34 ................................... CATGGGCTATAATTAGCCTTAGCCCATACGGTTA 2903493 35 100.0 42 ................................... TAAAAGCATCTTTCGCAGAGAGATAACTATTGTAGCTTCCCA 2903416 35 100.0 35 ................................... GGGTCATTTCCAAGCGATGCGACGATGATGTCATC 2903346 35 100.0 43 ................................... GATCAATGTTGTTAAAACAAAGTTCCGCAAGTTGGCTATCAGT 2903268 35 100.0 39 ................................... CTCGTAAACTTTTGCGGGGCATGACCCACTTCCCCGCAT 2903194 35 94.3 34 .........................A.......C. CCCACCAACCTCCCACTCAAAGGAGGAGGCCTAA 2903125 35 74.3 0 T.........A.T........C...C...A..GCA | A [2903117] ========== ====== ====== ====== =================================== =========================================== ================== 14 35 97.8 38 CTTTAGACTTCTCTGAAAGTTAAACGTATGGAAAC # Left flank : TTTATTGATTCATGGAGCAAAGGGAATCTCTAAACAACGGATGGAAGATTTGCGCTCTGAAGATTTAGAAAATCCAAGGAATCAGAAGATTAAAGATACGGTTCGTGTTTCCTGTTTACCCACAGATATTATAGTACAAATGAGCCAAATTTATCGCCTTGTTGTTGAGTTGATGCCACTTTCTGGCTTTCAAAATGTACAAGATTATCTAACGGTGAATCAGGAAACGGGCGATCCGATTTAACCTTATTATCTTTACTCGGAATTTAAGGAGTGGGTTGGGCAAATTTTGGATCGCGAGCAATAATCTTGTGGGGGTCGGGCGATCGCTGAAACCCTTATTCTTTCGTTGAAACCCCCGGAAAGCCTTCTCTGTCTAAGTTTCAGCTATTCTTATTGGGGTATTATTGCAAATATATCTCAATAATTTGGGTGTTTGCTTGACCCCCACAAAATTGAGTGCTAGAGTACAGTCAGAGCAAGGGTTTCAACCCGGCACT # Right flank : AATAACTTGAAAAAATACCCTCAACTTTTGGGTTATTTTGTTAGAATTAAATTCAGTTTCTTTCCATACGTTAGACTTGCTTAGAAGTCAAAGCGTTGCTGTTCTCAAATGGGTTTTAAACCACTCGATATTCAGCTTTGGGAACGAGCTTTTGCAAAATGCGCTGATGATTAACCGCATCATTTTGTGAACGAAAACGACCCACAACCAAACACTGATTATTAGTAACAGATTCTCGTTCTGAGGCGTTTGGCGATCGCACCAAACACCAGGGATGCAATCTTTCAAAAGCTGTCATTGCTCGTTCTCCTTACGCTTTGACCCCACGATAAGCCGAAGAATTTGCACAAAACAGGGCAGGCAACCCTTGACAAAATCAATTATTTGTGCAGCTCAACTGTTCTTTGAATTCAACAGGCAGATCGTCCCATCGTTCCCAGAGCAAATCCATCAGCGCCAAATGTCGAAGATCGGTTTGAGTCGGGCGGCGGTAACGTTTA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAGACTTCTCTGAAAGTTAAACGTATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.30,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 3 3589799-3587398 **** Predicted by CRISPRDetect 2.4 *** >NC_016640.1 Arthrospira platensis NIES-39, complete sequence, *** SEQUENCING IN PROGRESS *** Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================ ================== 3589798 37 100.0 47 ..................................... AATCCTGTCAAATAAATAAATAAATAAATAAATAAATAAATAAATAA 3589714 37 100.0 39 ..................................... TGCACGTTTTTTTTCCCGCGTGCCGTGTTCGGCTTCAGG 3589638 37 100.0 40 ..................................... TTCCCCTTAGTGCTGACTCGATAGCCATTTCTATATTTTG 3589561 37 100.0 36 ..................................... GTCTGGAACAACCGATAATCGTGTGTGGTGCAAAAA 3589488 37 100.0 41 ..................................... GTGTGACTTTTTTGCCTGTTGCTAAAATGAAATTTTCTGTT 3589410 37 100.0 43 ..................................... CACGAATCACCATTTCAATTTCGGGTATTTCCTTGATCGCGTT 3589330 37 100.0 44 ..................................... TCATCACTACCCAGAAGTCTTTGTACTTCATCCATGTCACCAGC 3589249 37 100.0 43 ..................................... AAGTATATACATTCTGCCTGGTTGAACTGCTCCATTATCTGGA 3589169 37 100.0 39 ..................................... AATTCATCTCCGTCTCCGTCGGAGTCTCCTTCGTGGATC 3589093 37 100.0 45 ..................................... TCGGATAGGAATGCAACTGATGCTTTTCCTCTTTCGATTGCCCCC 3589011 37 100.0 44 ..................................... TTTTATTTTATTTTTAGCTCCTTAGTTCCCTAGCAGTTTTTCTT 3588930 37 100.0 42 ..................................... AATAAATATAACATAGAGAATAGTAAAAATTATGAAGAAGAA 3588851 37 100.0 45 ..................................... CCGGAAGTCATCGAAGACTTACGCAAGGGGGCGGCTGGCCCCCTA 3588769 37 100.0 39 ..................................... ACGAGAATTGCTTCTCCTGCCACTTGTAGAAGGGGGCCT 3588693 37 100.0 44 ..................................... CCTCCTTTGAAAATCCGACTACCCTTCCTCTTAAAATTGGAAGG 3588612 37 100.0 48 ..................................... ATTAAATCTTTTACTGTTACTGTCCTTTATGCGGCACACAAACTTAGG 3588527 37 100.0 44 ..................................... TCGACATCGGTATCTAAATGCCCATCAAACACTCTGCCTATCAA 3588446 37 100.0 41 ..................................... TTCCCGAAAATGATGCTGAAACGCTTCTGGCGTTTGCCAGG 3588368 37 100.0 46 ..................................... GCGCGTAACGTCTTAGCACCGAAGAGCCCATCGATTTTACCCGGCG 3588285 37 100.0 41 ..................................... TCTATCTTCCGTTTGTCTTCTACATACTCCCACCCCACCCA 3588207 37 100.0 35 ..................................... TAAAAAGCGTGTTGTGGCTGCATCACAGGGAACCA 3588135 37 100.0 40 ..................................... TCCAAAATAGAGAGGCCGCTCTCTCTTGGTTGGAAAATAT 3588058 37 100.0 42 ..................................... GTTTCGCTTTTTTTGGGGCTTGCGTTTTTGCTTTGGTTTGGT 3587979 37 100.0 40 ..................................... CACATACCCCGAGGGGCGTAGATTTGCCACGACAGACCTA 3587902 37 100.0 44 ..................................... TACTGTTAATTCTAATTTTTCTTTTAAAAAGCTTACTATACTGT 3587821 37 100.0 36 ..................................... TTTTATATAGATTAAAGGAGGTTTATGCCATTTTCA 3587748 37 100.0 41 ..................................... TTTGAAGCCCATTTTATTTTCCTCAAATTACAACAATAAAA 3587670 37 100.0 42 ..................................... ATTTTCTAAATCCTGAACCCAGTATGTTCCGCCTCCTACGGG 3587591 37 100.0 45 ..................................... ATAATATTATTTGATGACCAGGGTACGTCTCAGGTCGTTAGGGGA 3587509 37 89.2 38 .................AAG.A............... GGCTAGGGAATGCCGATCGCATTTTGTGATTTTCCAAA 3587434 37 83.8 0 ...AT................AA.......G.....G | ========== ====== ====== ====== ===================================== ================================================ ================== 31 37 99.1 42 GTCCAACCCTACCAATTCCCCGCAAGGGGACGGAAAC # Left flank : CCTGGAGGAAAAAATTCTGGAGGACTTATTGAATAAGCGGTGGCTGAAGGTTTTGAATTTAGAAAAGGATAGTCTGCGGGCTTATCCCCTCAATCCCTCGACTAAAGCTCAGGTTAAGGTCTACGGGGGACCGCTTCCTTACGAACCACCAGACTTTCTCATTTTGTAAGGGTGGCGATCGTCCCAATTTTGATGGCTTTGGGGCTGAAATGCCCTTGAGTCAATGATTTTCAGCAATGTAAAGTTATATTGCAGTTTTTAATAATATGGCGCGACGAGGATACAACAGAAACCTGATATAAACTTGAGCTAAAAAAAGAGAAATTTGTTTTTTGGGGGGTTGACAGTCTCGCACAACTCCTGATAATATAAAAACATCGCAAAACAAACGAATTTACTCGCGCCAAACAAGCCTGTAAAGTTTTGTTAAGCACCTTCTACGTGTTCTCGCGCAAACGCACCTTGAAAACCGCATACTGTAAGGTTTCCAAAGGTATAGG # Right flank : GCGAGAAAACCGAGTCTTAAAAAGCCCCCAGGGTGAAGTCTTGTTAATGAGGGGGTAGGGTAGGGAAACAGTGTCAGTAGAAGATATTTCCCATCAATTAACCTTCCACTTCTCCATGGGTTTGGTGGGGGGAATTTCCTAACTTCACCTGCTTACCAATGAGATTTAAAAAAGTCGAGCCAAAATGCTGAATTTCCAAAAAGTTCGCATAAGCCGGGGCAGGTTTATAAATCCTAAAACTCTTCATAATTCCCAGAGTTGCCGCGCTTTCCAGGGGACCCACAAAACTGCTATCTCGGTCTAAAAAATAAGGTTGTTTGACCCAATGTTCCATCTGGTTATTGTTGAGAAAATAACAGCCAGCGTGGGGGTTTAAACTGCGATTAAATTGAATGGGTTGCTCCATCACCTTACCCACCAATTGGGGGCGATCGCGTATATTTTGAAACTTCGCCGTCACATGGGGTAATAAATCCCCATCAACATAGGCTTTATTAATA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCAACCCTACCAATTCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 4 4225592-4222943 **** Predicted by CRISPRDetect 2.4 *** >NC_016640.1 Arthrospira platensis NIES-39, complete sequence, *** SEQUENCING IN PROGRESS *** Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================ ================== 4225591 37 100.0 39 ..................................... GTCCGGTGGGCTTCATAGTAGCTGTAATTTGGACGGAAG 4225515 37 100.0 44 ..................................... TTCGCGCGATTAAAGCACGTAATCAAGACATTTGATTTGCCACA 4225434 37 100.0 44 ..................................... TGTTGGGCTCGTGGCAGCGCAATGCTGCGCTCACACCGCCAGAT 4225353 37 100.0 44 ..................................... CGCCCATCCCACGAGGCAATCCTTACCTTGATATCTTTTCTGAA 4225272 37 100.0 41 ..................................... TTAGAATCAAATAAGGAAAATAAAGAAATATTAGTTTTAAT 4225194 37 100.0 46 ..................................... CCAGGCTTTGAGGATAGGGTAGATATCCCGCAGACTCATCACCCCG 4225111 37 100.0 44 ..................................... TTTGAAACCTTCCTTTTCTAGCAACTCGACAGAAGCGATAACTA 4225030 37 100.0 40 ..................................... ACTCTTTTATTCTATGTAGTTCCGTGTAGTTGTAGTATAA 4224953 37 100.0 47 ..................................... CTCCTGCGTTAACGCATTTTTCGACTACGGAATCGAAATCCTGCAAC 4224869 37 100.0 48 ..................................... CTTAATCTTGTTTATTGCTTAGTTTCCGAGATAATAATCAGCGTCCTC 4224784 37 100.0 38 ..................................... CTATGAACGGGACCTCCACCTCCACGGATAAGGAGTTT 4224709 37 100.0 45 ..................................... GTAACTTGTTTTCCTTCTACGGTTGTCACTAGAGAAGCAGATCTG 4224627 37 100.0 41 ..................................... GTTCGTCTTGCAGGATAGCATCTGCTCGTTGATTCAGTTCA 4224549 37 100.0 43 ..................................... AGTCGTAGGTACTGGAACCGCATTCACCGCTGACTTTGCTATT 4224469 37 100.0 48 ..................................... TTGTGAATTTTCTACTGTTTCTCCGTTGGCACTTATGTCCACATAAGT 4224384 37 100.0 40 ..................................... CGGCCCGTAGGTATACTACCAGTTCGAAGGTAGTCCTGAA 4224307 37 100.0 43 ..................................... ATGGGCATTGTCGTTTTACTACAATCCTCCCTTTTTACTTTTT 4224227 37 100.0 41 ..................................... CAGACATGATTTGTATGGATAAATACTCCCCCTTCTGGGTG 4224149 37 100.0 43 ..................................... TTAGCTGTCTTTGGTGTTCATTCATCTGGAAATCCTCAGCAGA 4224069 37 100.0 41 ..................................... TAATTCAGGGTGTTACACCAAATAGGTGTATCCGCTTCCCA 4223991 37 100.0 41 ..................................... TTATAATATTTTTAAAGAACAAGAACCAAAACAAGAACAAG 4223913 37 100.0 39 ..................................... TTCGAACAATAGCAGTTCTGAGATTATCAAAATAATCTT 4223837 37 100.0 44 ..................................... TTAAATGACCTCATAGAAGGTATTTGTAAATTATTTCCTTTTAT 4223756 37 100.0 36 ..................................... TTCTGACCGGGGAGAAGCCCTCCCCTTACCGAGTTT 4223683 37 100.0 42 ..................................... TATGCTTTTGATTCCGCTTCTTTTATCTCTTGTCTAGTGGCG 4223604 37 100.0 41 ..................................... AGTCCATATTTTAAAGTACCCGGTTACCTTTTTATTATTTA 4223526 37 100.0 45 ..................................... ATAATCCACCTTCCGATTTGACCGTTATTCTTTACAGCCAACGGA 4223444 37 100.0 42 ..................................... GAACCTGGGGCATATTACCCTCTTGTCCTGCAGAGAAAAGCC 4223365 37 100.0 39 ..................................... TTTAACCAGACTACATCACAGTCTGTTAGCGCTTCCTCG 4223289 37 89.2 43 .................AAG...C............. GATCGCAATTCTCTAGTGCCCTTTTCCTGTGATACCCGCTGAG 4223209 37 89.2 39 .................AAG...C............. TTATCGAATGTCGTCTTAGAGTGCTTTTTTGGATTTGAA 4223133 37 89.2 41 .................AAG...C............. AGGGGGAAGACTCCCCACTGGTAAGCGCCATATTCTCCCAG 4223055 37 89.2 39 .................AAG...C............. GAAATCCGAGCGATTCCACTGGGTTGGTTGTGTTACTGT 4222979 37 86.5 0 .................AAG...C............G | ========== ====== ====== ====== ===================================== ================================================ ================== 34 37 98.3 42 GTCAGACCCTACCAATTCCCCGCAAGGGGACGGAAAC # Left flank : CAGGTGCATTGGACTCAGTTCACCGCTGACGGACAATCTGGGGATGCCAAAATGTTGACAATTGCTGAAATTTCTTGGGGTGGACTTTGGTTATCTTCCAGGGTTAGGTGGGCTTGAAGGTCTCTCCCCTGCCCCAGGGAATGAGTCGGTGGGTTGATTCTCATAATTATTGGGGCTTTTTAAGGCGATCGACCCTCCCTAATGGATGGATTCCTTTCTGGGTGAGTGTTTGGGACTTTGTAAAGTTATATGACAGATTCTCATAACCTCGCGCGACTGGCAATCCTGGGCTAGTTCAGGTAAATTTGAGCTAGAAAAAGAAAAGTTTTTGTTTTTGGGGGTTGACAGTCTGGCACTATGGCTGATAATATATATCCAGCGAAAACAAAGGAATTTGCTCCCCAAAAAAAGGGCTGTAAAGTTTTGTTAAGCACCTTCTACGTGCTCTCGCGCGATCGTACCTTGAAAACCGCATACTGTAAGGTTTCCAAAGGTATAGG # Right flank : CTAACTGGTGTGTTGATTTTCTCAGGGTCGAAGTTGATAGAGGTCCGCCAGTGGTCAATGGGGTAGTTAATAGCCATCACCTTTTGCGACCCTAGAGTTAGGGATTCATCCCCAAATTGGGTGGGGTATGATGGTGCAAAATCCGATTAATAATCCCACTGGTAGAAGTAGGCATTTCCACGGCAATTAGGACAATCTTGCCGCCATAGCTTTGAACCGTGGGCGCTTCCGGTAGCGTGTCAATGGTGTAATCACCACCCTTAACATAGATATCAGGTTGTAACTGTTCAATAATCGCCCTAGCAGTGCTTTCTGGAAAAATCACCACTGCATCTACGGGTTTTAAGTGGCTGAGAACTTCGGCTCGCTGTAATTCTGGTATAATAGGACGGGGAGGATATCCAGCCGAGTGGGGTTTAATCAGGCGAACAGATCGATCGCTATTGAGACCGACCACCAGCGATCGCCCTAAACTTTTGGCTTGGGTCAGGTAGCGAATA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGACCCTACCAATTCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 5 4296783-4301140 **** Predicted by CRISPRDetect 2.4 *** >NC_016640.1 Arthrospira platensis NIES-39, complete sequence, *** SEQUENCING IN PROGRESS *** Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================================================================================================ ================== 4296783 37 100.0 44 ..................................... GCTTCGGGAAATTGTCGGGACTCCTTCTGGCCAGAGCGGAGTAG 4296864 37 100.0 42 ..................................... AAGATGATGCCTCTGTCCCCACTGAAGGGGAAGATAGGGGCC 4296943 37 100.0 44 ..................................... GAACGAGGACTTCGCCATCCTCGTTCTCGCTGGTTGTTTCCGTG 4297024 37 100.0 37 ..................................... TTCCGTCTGGGGTAATCGCGACTGCTAATACCCCGCC 4297098 37 100.0 41 ..................................... TCGATTTCAACTACCAAGCTACGAGGTGTTGCTAGTAAGTT 4297176 37 100.0 43 ..................................... CCGCGCTTCTCAGCGAGTTCCCTCATCTTTTCCTCTTTCGAGG 4297256 37 100.0 34 ..................................... CACAGCACGGGCTCAGTGCCGTTGTATAGGGCAA 4297327 37 100.0 40 ..................................... TTTCGTGTTTAAGCGCCTTTATCACAGGGTGTTCTAAAGG 4297404 37 100.0 45 ..................................... TGAACTCTTTAAAGTCCCCCCATATACTGGAGAGTGTCCCCTCCG 4297486 37 100.0 45 ..................................... TTCATGGCACACATAGACAGCTTCGTCTTTAGGGACTACAAAAGG 4297568 37 100.0 43 ..................................... AGGGATGGCATCCAAGCATACCCCTTTTGTATGTGCTGTGCCA 4297648 37 100.0 41 ..................................... TTTTCCTCGGATTATTCCGTTCTTCCCAACTGGAGACAAAA 4297726 37 100.0 97 ..................................... AATCAGTGCTAATCTCGTCCGGGGGCTGAACCGACAAAATACCTTGTCAGACTCTGAGATACTGAGGCCTTGATAGAAATAAGGAGGAAAAAACAAT 4297860 37 100.0 41 ..................................... TTTTCCTCGGATTATTCCGTTCTTCCCAACTGGAGACAAAA 4297938 37 100.0 45 ..................................... AATCAGTGCTAATCTCGTCCGGGGGCTGAACCGACAAAATACCTT 4298020 37 100.0 44 ..................................... CTTTGAAGATATTTTTATAAAAAATCAAAAAAGGTTTATTAAGT 4298101 37 100.0 46 ..................................... ACGGTCCCTGTCCCTGTGTTTGTTAATACCGCCCCACAGGGGTGCG 4298184 37 100.0 43 ..................................... TTTACCAATAGTATTCCTGTTCCTGTTCATGAAGGACCGAGCG 4298264 37 100.0 39 ..................................... GTTTTTTCCCTAGCAATCAAACCCTTTAGCTTTGTTTGT 4298340 37 100.0 41 ..................................... CCTGGTTGTGTCACCAACCAAAAATTACTTTTGTCCTTATT 4298418 37 100.0 39 ..................................... AAAAGCCGTGCTACAAAAGGCTCCCAGGACATACAGCAT 4298494 37 100.0 124 ..................................... AAGAGGCACTGAGCCTGGATGAGTGGAACGATGTTATCATGGTGTCAGACGTTTGTCCTAAGCCACTTGACTTTTTATACTCAATGCCTTATGGCCTGGATGAGTGGAACGATGTTATCATGGT 4298655 37 100.0 45 ..................................... TCGAACGCACCAAATTCGAGGTAGCTTTCCGCTCCGTCCCCTCCG 4298737 37 100.0 42 ..................................... AAGGATATTTTTTAGAAAAAATTGAACTAATTTATAAAGAAA 4298816 37 100.0 45 ..................................... CAAACCCAGCACAGTACGGGTTCTTGTGGGTCTTTTGCGTGAATA 4298898 37 100.0 40 ..................................... CTTACAAATCGGCAAATTCTTGTTTTTTGATTTTTTAGGT 4298975 37 100.0 43 ..................................... AAAGGAGCGGATATAGGCTCTCCGATATTTTCTTCCCCGTTTT 4299055 37 100.0 47 ..................................... TTAAATCATCCTTTGATATGATGTCCGATTCATCAAATATATATAGG 4299139 37 100.0 39 ..................................... TTGCTTACCCCGCGTTAGGACTACTGCTTGTATTAAGCT 4299215 37 100.0 42 ..................................... TGTCTTATAGAAACCAGGTTTCCATAATTCTGATGCTGGTAT 4299294 37 100.0 45 ..................................... TTGGATTGCCTTGCTAGTGTTTCTCCAGGCATTTCTGCTGTCAGC 4299376 37 100.0 38 ..................................... TGGAGGGGTTTTTTCGTTTCCCCGGAGGATTTTACCCA 4299451 37 100.0 42 ..................................... CCTGCTCCTTGGAGGATGATTTGGTCAGCTTGGAGGATTTCC 4299530 37 100.0 46 ..................................... TATCTGGAACAATAGCAGTTCTGAGATTATTAAAATAATCTTTATT 4299613 37 100.0 44 ..................................... TATGCATAAGAAACATACTCTTCCACTTTTATCGCCTCTTCACT 4299694 37 100.0 41 ..................................... TTGATTAACGGCATCGCGTTAACCTGTTTAACTTGAGAAGC 4299772 37 100.0 41 ..................................... AAACCTTGGTCCACCAACTTCGGTCGGCATCCTCTTTGTCT 4299850 37 100.0 39 ..................................... TTACCAATAGTATTCCTCCTGTTCCTGTTCCTGTTCCTG 4299926 37 100.0 49 ..................................... CCCTAACCACAGGTTTAGCTCGGGGTCTAGTTCGATGCAGGCGCAGCAA 4300012 37 100.0 43 ..................................... GATACGCAACCATCAGCGCTGCTTCTAATTGCTTATCATCCAA 4300092 37 100.0 39 ..................................... TGTTGCTCTTCCGGGGTAGGTCCCCGCGAGTTGAACTCA 4300168 37 100.0 45 ..................................... TTTTGGTTTTATTATCATTGTTGCTCCTTTTGCCATAAAGCTAAT 4300250 37 100.0 45 ..................................... ACGCTGTCAGCTCTTCCGGCGAGTTATCCCAAATCAACTCGTCCT 4300332 37 100.0 43 ..................................... ATTAGGTTGACGCAATGCGATTGAGTGTACCTTACAGAAGCCA 4300412 37 100.0 38 ..................................... CCACTTTCTGTACTACTTTAAGTACTTCTCTCAGGATA 4300487 37 100.0 43 ..................................... AACCCTTTTTCGGCGTTTTTGAATTGAGTAAAAAAATCAGGCT 4300567 37 100.0 35 ..................................... ATTAAATACTCCCCCATATCGGGGTCATAGATAAT 4300639 37 100.0 38 ..................................... GAAAACTCGCCAATTCTCATTGTTCGGGGGATTGAGCG 4300714 37 100.0 47 ..................................... CTGTCACAATGCTCCAGTGGAGGGCGGGCCTATCGATAGCATAAATA 4300798 37 100.0 38 ..................................... CAGGGAGCTATCTCTTCTTTCTCAATTTCAAGAATGAG 4300873 37 81.1 42 ...TA.........G..T..T.TC............. AACCCGGAACCACAAATAATATCTGTTCCGGGTTCTCCTACC 4300952 37 83.8 38 T..TA............AAG................. CAGGGAGCCATCTCTTCTTTCTCAATTTCAAGAATGAG 4301027 37 86.5 40 ...TA............AAG................. AGCTTTTGAAACTTAGCCTTAATAAAAAGAGAATCAGATA 4301104 37 89.2 0 .................AAG..........T...... | ========== ====== ====== ====== ===================================== ============================================================================================================================ ================== 54 37 98.9 45 GTCAGACCCTACCAATTCCCCGCAAGGGGACGGAAAC # Left flank : TCGCGGATGTGGTGGCCAATCTTGGCGACAGGTTCCCCCATAGCCAACTACACCTCACGCCTCCCCTAGACCACAGCACACACCTGGGGGATTTGATTTGTACTTGGGCGAAATCTTACCTCTAAGATATCTTCCCCCTGCTCGGGTGGGGGGTGATTCTCATAATTATTGGGGTTTTTTGAGGCGATCGACCCTCCCCAATATCTCTGTTGGTTTCGGGGTAAGTGTTTGGGCTTGTGTAAAGTAATGTTACAGATTCTCATAACCTCGCGCGAGTTTTAATTTGGCGATCGTTCAAGTAAACTGGAGCCAACAACAGAAAAGTTTTTGTTTTTGGGGGTTGACACTCTGGCGCTCTCTCTGATAGTATTAATTTCAGTGAAAACAAAGGAATTTGCTTCGACAAAAACAGCCTGTAAAGTTTTGTTAAGCACCTTCTAGGTATGCTCGCGCAAACGCACCTTGAAAACCCCATACTGCAACGTTTCCAAAGGCATAGG # Right flank : CTTAACTCCACAAGGACACCTCGTCGCTTGTGGTGAAAGCGACCGTCAGACCCCAGCAACTCCCCCCAGCAGAGCGATCGCATTTTCACAGCCAGCAACTCCTCTAGGGGCGATCGCATTTTCACAGCCAGCAACTCCCCCCACCAGAGCGATCGCATTTTCACAGCCAGCAACTCCTCTAGGGGCGATCGCATTTTCACAGCCAGCAACTCCCCCCAACCAGAGCGATCGCATTTTCACAGCCAGCAACTCCTCTAGGAGCGATCGCATTTTCACAGCCAGCAACTCCCCCAACCAGAGCGATCGCATTTTCACAGCCAGCAACTCCTCTAGGGGCGATCGCATTTTCACAGCCAGCAATTCCCCCAACCAGAGCGATCGCATTTTCACAGCCAGCAACTCCCCCCAGCAGAGCGAAACCCCAGAAATTAGTTAATTTTGAGAGCGATCGCCAGGGTATAATCATCTGCAAGGGATTTTTGCTAATTGACTCAATGAAA # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGACCCTACCAATTCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 6 4341849-4342191 **** Predicted by CRISPRDetect 2.4 *** >NC_016640.1 Arthrospira platensis NIES-39, complete sequence, *** SEQUENCING IN PROGRESS *** Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================================== ======================================= ================== 4341849 43 100.0 34 ........................................... ATGATTGGGTGTAGGGTGCGTCAGACACCGAAAA 4341926 43 97.7 34 ..........................T................ ATGATTGGGTGTAGGGTGCGTCAGACACCGAAAA 4342003 43 100.0 39 ........................................... GGCGGCTGAAATCCACACCGGATAATTGAGGGCTGACGC 4342028 43 100.0 39 ........................................... TTGAGGGCTGACGCACCACAAAAGGCTGCTGAAATCCAC 4342076 43 93.0 28 .....................................GG.T.. TTGAGGGCTGACGCACCACAAAAGGCGG 4342147 43 90.7 0 ........................T...............GGT | CT [4342176] ========== ====== ====== ====== =========================================== ======================================= ================== 6 43 96.9 35 CTGAAATCCACACCGGATAATTGAGGGCTGACGCACCACAAAA # Left flank : GATTGTTTATATGGTGGTCAGGGTAATGATACTCTCTATGGGGGTCGAGGTAGGGATTATTTAAGTGGCGATCGCGGTAATGATTTCCTGGTTGGTGTTGATACTAGCGCTGATTTTCCGGGACTGACAACTATTGACACCCTGGTTGGCGGAGAAGGTTTTGATACTTTTGTATTAGGCAATGAAAACGGACCGTTTTACGATAACGGTAATGATGATATTAATGGTGTGGCTGACTATGCTTTGATTTTGAATTTTAACAGCACTACTGATGTCATCTTACTGAGTAATGACGATTATTTATTCTCTACTGATATCCCCCAACCCCTCCCACAAGGAACTGCTATTTTCCGTCGGACTCCCGGCGAAAATGAGTTGATTGCTATTTTAGAAGGGGTGGTCGGTCTTCAATTTGATGGCACTAATCTTGATGATGGACCGATTAGGTTTATCTAGCACCACAAAAATGATTGGGTGTAGGGTGCGTCAGACACCGAAAA # Right flank : TGAATGTATGCACATAATGGCGTTTTTGTCAAGAGGTACAAAAAAAGCGATCGCTTATTACTCGAAAACTCGTGCATCGTGAATTTAATATTTTGCTGAGAGAATAATTTATCTGGCGATATAATCGTAGTTGTAGCCTTTATTTTTGCATAATGACAGAGTAGCCCCTTGGTATCTATTTCTGAGATGATACCATAACCCCTATAATCTCGTCAACTTTTTGCGAGGGATTTTCAATAAAAATGTATTAATTCTTAACGTTCTTTGGAAATTCCAATCGATGGGGCTGTATAAATTAGTAAAGTTTATGTGATGGTGGGTTTTGGGGGGATGGATTGTTGATGAAAAAAAAGGCTATCCTGAAAGTGGATAGCCTGTGAATTATGAAGGAAAAATGGGGTTAAAAATGAGGCTTAGGCGATCGCAGCCATTTTGACATCGCTAGAAGCTAATAACTCCTGCAACTCCTCAGAATCAACGGTTTCTTTCTCGATGAGCAT # Questionable array : NO Score: 2.71 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAAATCCACACCGGATAATTGAGGGCTGACGCACCACAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 7 5189874-5191453 **** Predicted by CRISPRDetect 2.4 *** >NC_016640.1 Arthrospira platensis NIES-39, complete sequence, *** SEQUENCING IN PROGRESS *** Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 5189874 35 100.0 34 ................................... CATCATCTCGATGGCATGGGAGTGTTCTCAACTT 5189943 35 100.0 36 ................................... CTGCCCAAGGCCTGCCGCCCCTTAAGTCCCTAAAAC 5190014 35 100.0 37 ................................... GTTACATCGTTACAGATGTCTACTTTGGCGGTCGCGA 5190086 35 100.0 32 ................................... CAGTATAAGGTTGCATATGCACATGTCAACCA 5190153 35 100.0 41 ................................... AGGAAGGGTGGATCGTGGTATTGACATGTAAACGAGGTCAA 5190229 35 100.0 36 ................................... TGTTTCATGGTCTACAAGGTCTACAAGGGGGGGCGA 5190300 35 100.0 37 ................................... ATTGGTGTCCTGAGATATCATTGTGGTATCAAGACAA 5190372 35 100.0 35 ................................... TGCTTCGTCCCCTTCGTCCTTGGGACTGGGAACTT 5190442 35 100.0 40 ................................... CTTTGATGTCTTTATTCCCAACGGCTACGGCGGCTTCAAG 5190517 35 100.0 35 ................................... GAAGGAAGAGGCTTTGTCGTGGAAGGAAGCGACAA 5190587 35 100.0 34 ................................... CAGTGAACGATGTAAGCATCATACGGTCCATATC 5190656 35 100.0 32 ................................... CGAAAGACAAAGTTTTTGTCCCCCACCTTCCA 5190723 35 100.0 35 ................................... TACAAGGTCCTCCTCCACGGGGAACGACAAGTATT 5190793 35 100.0 34 ................................... CGGAGGAATGTTTGTTGTTCGGGCAGCAACCTTT 5190862 35 100.0 33 ................................... GAATAGGTCTAGACGCATTCAAGTACCCATCTG 5190930 35 100.0 34 ................................... CAGTTCGCTCCTTAAAGTGCGAACTATTTGGGTT 5190999 35 100.0 32 ................................... CAGGGGGGAAGCCAAGGTCTATCTCGGAAAAA 5191066 35 100.0 34 ................................... ACCAACAGCGGCTTCGTGCCGTTCGTAAACTTTC 5191135 35 100.0 37 ................................... AAAGTTTCGGCAAAGGGGCTGACAAGCCCCTCCTTTT 5191207 35 100.0 35 ................................... AATCGTAGAAATCGTAACTTACAGGTCACTCCATT 5191277 35 100.0 37 ................................... TTCTTTGGGACGACGAGTGCAACTACTCCGAAGAAGA 5191349 35 100.0 35 ................................... GTAATTACTTTACATTAATTTCAAAGATTGATCAA 5191419 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================= ================== 23 35 100.0 35 GTTGCCATACGTTCGACTTTCAAAGAAGTCTCAAG # Left flank : ATGTTTTTGATGGTAGCTTTCAGATTCGTTTAACTCTCCCAGGGCATCGTAAATATTCCCCAAGCCGTTGTAACAAACCGCATCACAGCCCGGATTCAATTTTCCGAGGAGAGATTTATAGAGTTTTTCTTGTTGGTCATAATAACCCCAAACTCCCAATTGGTCGTGTAATTCTTGGTTGCTTTGGGGGTCAGGAATCACTGTCAAAATTTGGGTCGCCCGCCGCCAATCTTCCACCTCCCATAGGTGATAAAAAGACTCCAGGTAATGCTGCACCCGTTGCAGGGGGGTGGCTTCTTGGGGGGGGATGCTTTGATGACACAAAAAATATTCGACGGCAGTATAAGTAGCTAACTGCTCGATGGGAACTGTATTGATATCGATATCAAGTTCATCCCACAGCATTGGATGTCTCCTTTTGGGTATCCCATTGGCTCTGAAACAGTTTAGCACTACTTCCGTTCAAAAAGCGATCGCTTTTTGACATTTACAAAAAAGTA # Right flank : GAGCATAAGAACGAAATCCTTGCTCTGAAGGGATTCTAACCCACCAATTCTATAGGGGTCAAGTCAGTACCCCAATTATTGACATAGATTAGCAATAATTGAGTTAACAAAATGACTGAAACCCGGTCGTAGCAGTCCACCTATAGGGGTCAACGAAAAAATCAGTGATTGGGCGGTTTGCCAGACCCCTGTAGGTGAATGGATGTTACAGGTCAGACCTGGGGCATCATTTGGAAAAAGCTAAATTTTCCACAACATCGGTCGATAGGTCTCCCGTTCTCCCATCAGACAGGAGATGTACTCCCACACCTGTAATTCCAGACAGCGATAGTAGCTGACCTTGTGACCTGTATGGGGATGGGTGGTGGAGAGGGATAGCTTGTCCTGCCAGTGCTTGAGATACTTTTTCAGAGCATCCGAATGTAGGTAAACTGATTCATTTAAGCTGAACAGTCCTGAACATTAATTGACAATGCTCGGACTGTAACTATAGCAATACC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCCATACGTTCGACTTTCAAAGAAGTCTCAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA //