Array 1 12134-13422 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRXF01000331.1 Pseudomonas aeruginosa isolate R, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 12134 28 100.0 32 ............................ ACACGGGTGACTATGCGTTTACTAGCCATAGA 12194 28 100.0 31 ............................ GCTGCCGGACGAACGCACGGCGCTCCAGGTC 12253 28 100.0 32 ............................ TCGACGTGCTGGATATCCCTGCTCGCACTCAG 12313 28 100.0 32 ............................ TGCAGCGATTGCACCTTGGCCTGCTGCCGATC 12373 28 100.0 32 ............................ AGGCCAAGGCACATTCAGCGTCGCCGACCCGC 12433 28 100.0 32 ............................ ATTGGACAGCACTACCCAGCACTCGGCAGGCT 12493 28 100.0 32 ............................ ACTGTATCGCCGCAAACGAGCCCGTTCTGGCA 12553 28 100.0 33 ............................ AGTTGATATCAAGATGCCGTGCGGCTCTGTATT 12614 28 100.0 32 ............................ TCGCCCATCAGCCAGATGCAGCGCAGCGTCAA 12674 28 100.0 32 ............................ ATCCATAGAGCACGCTGTTGATGCGCACATGG 12734 28 100.0 32 ............................ ATAGAGGCCGAAGCTGTAGCCGGTGAAATCAA 12794 28 100.0 32 ............................ ACACCAAGAGTCGCGGCGACAACTACCAGACG 12854 28 100.0 32 ............................ TGCGGACCCGCGCCGAGCAGATCGCCGCGACG 12914 28 100.0 32 ............................ ACTGGAGACGAGCGCATGCACGACCCTTTCAA 12974 28 100.0 33 ............................ GACCAGGGCGTCGACAGCCGCAATCTCCATGGC 13035 28 100.0 32 ............................ TGGTAGGCCGAGCGGACAAAGGCGGTGGCGTG 13095 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 13155 28 100.0 32 ............................ TGGTTCCGGCTCAAGCAGCGCAAGGAACTGAG 13215 28 96.4 32 ..............C............. TTGGGCTTGGGAGTGCTGCAGTTAGACCTGCC 13275 28 100.0 32 ............................ AGCAGTTCGAATTCGTCATCCAGTTCTAAGGT 13335 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 13395 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 22 28 98.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTGGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGTTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGACGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 23826-22296 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRXF01000331.1 Pseudomonas aeruginosa isolate R, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 23825 28 100.0 32 ............................ GCAAGGGGCGCTTAGGTGACCGAAGGCTGAGA 23765 28 100.0 32 ............................ ATAGACATAACTCCCGTCTGGGTCGGTAGTGA 23705 28 100.0 32 ............................ TCTAACCAAGCTTCGACCCTGCCAGGGCCTCG 23645 28 100.0 32 ............................ TTTCGGCGGAAATTCAACCCCCTGGAGACATG 23585 28 100.0 32 ............................ ATCCCGATCTGGAGCCAGGTGTCGTAGTCTTC 23525 28 100.0 33 ............................ TTGGCAACGACGATCTGCGCCCATGCTTCGAGG 23464 28 100.0 32 ............................ CACTAGGGTACAGGACTGTCGAAAGACTGCGC 23404 28 100.0 32 ............................ TACAAGGACAAGCAGAAACACTACGAGTGGCT 23344 28 100.0 32 ............................ TGATGTCCACTCGCAGTTTCAGTGATGATGAT 23284 28 100.0 32 ............................ CGGAGCAGGCATTGCGGGTGCGGGAATGCTGG 23224 28 100.0 32 ............................ ATTCGAATGAACTCCATGCTCATGGCTCCTCT 23164 28 100.0 32 ............................ CGGCGGCACCACCTGCAGCATCAGCGCACTCA 23104 28 100.0 32 ............................ CAGACCGGCATCGAGGCGCGTCGCGGCCATCG 23044 28 100.0 32 ............................ ACTCTGCGCCAGAGGTCAGCACCAGAAGATCA 22984 28 100.0 32 ............................ TATAACGATATTGATGCCGGATTTAGGCCAAG 22924 28 100.0 32 ............................ AGGTAGACGTCCTCGCCCACACCGATGTCGCG 22864 28 100.0 32 ............................ GCCCAGGCACGTTTGCTCGCGCTTTGATCTCA 22804 28 100.0 32 ............................ GAAAAGAGTTGACTGCACAGTGGGCATCACCT 22744 28 100.0 32 ............................ AATTGCAGGTGACCGACAGGCTTGCGGTACCA 22684 28 100.0 32 ............................ AGCTCGGTCGCCCCGGGGCGGCCGGCGTAGTA 22624 28 100.0 32 ............................ AGGTCGGGGATGGATCGAACCACCCGCGCGAC 22564 28 100.0 32 ............................ GTGCCCGGGGCCGACTCCGAACCCGACGAGCA 22504 28 100.0 32 ............................ TTGTCGCTGATATCGAAGGTGTCCCACTTCCG 22444 28 100.0 32 ............................ AGTAGCCGTCGGCGTTGTGACAAAGCCATTCC 22384 28 100.0 33 ............................ GCACGGTAGGTGCCGGCGCCCACGCCGGAGGCT 22323 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 26 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCTACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //