Array 1 54357-55910 **** Predicted by CRISPRDetect 2.4 *** >NZ_REHC01000002.1 Lactobacillus sp. ESL0246 Ga0226850_102, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 54357 29 96.6 32 ............................C TGGTTTACACCCAAAAAGGTGTTGAGAAGACA 54418 29 100.0 32 ............................. GTTTACTTATCCATGTAGAACAATTAAGTCAG 54479 29 100.0 32 ............................. ATACAATTTTGTCAACAGTCTTTTAAAACTTT 54540 29 100.0 32 ............................. ATATCATAGAGTAAATAAAGAAAGTAAACCTA 54601 29 100.0 32 ............................. AACTAAATCCATGAAAAATGGACATCATAAAA 54662 29 100.0 32 ............................. TTGACGTCTATGTAGACGAAGATAGATACGGA 54723 29 100.0 32 ............................. GAAACTTGAACTCTTTTTGCCTTTAACTTGTG 54784 29 100.0 32 ............................. GACTGATGAGCAAAGATTAATTAACAGCACGG 54845 29 100.0 32 ............................. AATGGTATAAATCTTTAGTCATCATGTATTTA 54906 29 100.0 32 ............................. ATTATTATGTATAGTATTACCTTATATATTTT 54967 29 96.6 32 ............................C CTTGTACCAGAGAATAGTGGTCATGCCATTTG 55028 29 96.6 32 ............................C TGCTATCAAATTATAAGGGTTCTACTATAGTT 55089 29 100.0 32 ............................. AGTCATTTTCAACACCAGTTAAAACAGTAATT 55150 29 100.0 32 ............................. TACAAGTGGGAGTTTGAAATTATTAAATGAAA 55211 29 96.6 32 ............................C CAAAATTATGAAGATGTGGGATCCATTTTTAG 55272 29 100.0 32 ............................. TTAGACAATCCGTTTTGCAATTGCTAGAACGG 55333 29 100.0 32 ............................. CCTTTGGCGTTTGAGGTTTTTTAGCCTTTTTC 55394 29 100.0 32 ............................. ATACAATAGATTGTATACAGTATACAATAATT 55455 29 100.0 32 ............................. TAGTTTGAATGATATTGTTCGTCTTGATTGGT 55516 29 100.0 32 ............................. AGTATAAAATGTTATACTTTATATAAAGAAAA 55577 29 100.0 32 ............................. GATTTAACTGGAGATGCTGATGAATGGAATGA 55638 29 100.0 32 ............................. GAAAAATGGAATAAGAAAAATAAGGAGCGAAT 55699 29 100.0 32 ............................. GATGGTAGCTACCAAATTAACAGAATAAATAA 55760 29 96.6 32 ............................C CTAAAAAACGCTGGTATATCAGTAAGAACTTT 55821 29 96.6 32 ............................C ATGATTACAATGTAATCACAAGTCATGAATAC 55882 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.1 32 GTGTTCCCCACGTATGTGGGGGTGATCCT # Left flank : GGTAAAGATCAAATTATTTCTATTGGAGCAGTTAAACAAATTAATGATAAAGAGTGTAATAGTTTTTATAGATTAATTAAAGTTGATACTGTAGTTCCTAAGGCAATAACCAAATTAACCGGTATAACAGCACAATTATTAAAAGAAGATGGGGTTACTTTAGATCAAGCTCTTAGAGAACTAACTGAGTTTGTTAATTCTGCCACGATTATTGGCTATAATTTACAGTTTGATTTATCCTTTCTTATGTACGGCTATAGATTTGTAAATTTAAAAGAACCGGATAATAAAACTTTAGATTTATTACCTGTTGTTAAAAAAGTGGAAAAATTTATTGATAATTATCGTTTGGCAACTATTTTAGATTTTTATAATATTAAGAATTCAAAGCCACATAATGCACTATCTGATGCTAAGGCTACGTTGCAGTTGTTATACAAACTGATGGAAAACGGAAAAATTAAAGTTTAAAAATAAAGGTATAACAAGGATCTTTTACT # Right flank : TAGAAGAAATAATTCCTGTTTTAGCTTTGAGTGGTGTTCAAAGTGACTTAAGTTAGGTTATTGTTGGTGGAAATGTTGCCCAATGTGCTCTACAACTTTAGACCAAGTATTTTTGAGTATTGGCTTGCATATGAAGGGTTTGCTTCTCTTACGCTAATTGCTGTTTTTGCTGAATAAGTTTTTGTGGATGTGCTTGATTTGGTGGTCTAATTCTTGGCTAACAATTTTTTGATCAGTTAATTCAACTCCTAATGCAACACTTTTATTTTTTTGTTGCAGAGATAAGGTTTGAGCTTGGTCAACGGCACGCATAGCCTGCTGGTATTCGTGGACGTTTTTTAATTGATTGGCTAAGCTTGGTTCACGTTCAATGTCATATTTACGCACTAGTTCAGTTAGACGGATCGGCTTAACGGTTACTCCCTGCTGTGCTGCTGTGCGCCTTTTGAATGCGCGAACCAAGCTCGTCCATGTGTATCACCGCATTGTAAAACTGCAAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGTATGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 90488-92767 **** Predicted by CRISPRDetect 2.4 *** >NZ_REHC01000003.1 Lactobacillus sp. ESL0246 Ga0226850_103, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 90488 36 100.0 30 .................................... TCTATATCAATATAATAGCGTTAATGTTTA 90554 36 100.0 30 .................................... GCATTTTTAGAATTAAGCAGTATATCTTAT 90620 36 100.0 30 .................................... ATTGTAAACCTGTAAATTGGGGTTATTCTG 90686 36 100.0 30 .................................... TAATCTGTTCATCTTTTCCCACCTCCTGCT 90752 36 100.0 30 .................................... AATTAGTCTATTGTGATATACTAATAATAG 90818 36 100.0 30 .................................... TTACTAAACAAGCAATTACTTACTTTGTCA 90884 36 100.0 30 .................................... TTGTCTGATCTAATTCTTTTTCATGTTCAT 90950 36 100.0 30 .................................... GTGCTTGATTAAGTACTTGCCTTGCAACAG 91016 35 97.2 30 .....................-.............. CATAGCAGTATTAAAACATCAACAATCGGC 91081 36 100.0 30 .................................... TGATTGAACGAAAAATTAAATTTATTTATT 91147 36 97.2 30 ...........C........................ AAAAATACCACCCATAGAGCAATCAAACTT 91213 36 100.0 30 .................................... AAGTTAAAAATACTAAGTTAAATGATTGAT 91279 36 100.0 30 .................................... TTGTCGACACAAACACTGGACAACAAACAT 91345 36 100.0 30 .................................... TTGGATTGAGAATGCCCCCAATAGCAAAAC 91411 36 100.0 30 .................................... ACGATTGCAATCAGTACGGCTTATGACAAT 91477 36 100.0 30 .................................... TAGTTTTTAGCAAGCTGGGCTATCCAGCCA 91543 36 100.0 30 .................................... GCCTGATGATAATAAAAAATTACAAAAAAT 91609 36 100.0 30 .................................... CCGTAATTAATCATTTTTTGTATATCTCCT 91675 36 100.0 30 .................................... TTACTAGTTTGCGCATTAATTTAGACGGAA 91741 36 100.0 30 .................................... AAGCAGCAATCTGAGATTGATACCTCGACT 91807 36 100.0 30 .................................... ATTCCGAGGGTACTTTAAAACTTGATAATT 91873 36 100.0 30 .................................... CTCGAACTTCAAGGTATTAGAAAAAAACAT 91939 36 100.0 30 .................................... AATTTTTGAATTGCAAACTGCAATCCGGTG 92005 36 100.0 30 .................................... AGTTAAGGAGTGATATACGTGGTAAGTGAA 92071 36 100.0 31 .................................... TTAATTTACTAATATATAATAACCTTAAAAT 92138 36 100.0 30 .................................... AATACCTTTGCCTGATTGGCTGATTTCCAT 92204 36 100.0 30 .................................... TTATGTTGTCATGGTTATGCAGAGTCACCA 92270 36 100.0 30 .................................... GATCTACGTGATCTGGTAGAACGAAATTGG 92336 36 100.0 30 .................................... ACCACTGGTTGAAGCATTCTGTATTAATTA 92402 36 100.0 30 .................................... AAAAAAGCTAGAAAAAAGGCGAGAAAGCTT 92468 36 100.0 30 .................................... CAGAAAATGAAATAGATTTTAAACTAGCTA 92534 36 100.0 30 .................................... TTAAGAATATGTATACCGCCAAAGTTAATC 92600 36 100.0 30 .................................... GCACAGCCTTATAATCGTTGTTGCTAAACT 92666 36 100.0 30 .................................... AAAAAGAGCTGATAGATATAATCGCATCAA 92732 36 91.7 0 ..............................C.A.T. | ========== ====== ====== ====== ==================================== =============================== ================== 35 36 99.6 30 GTTTTAGATGGTTGTTAGATCAATGATGATTAGAAC # Left flank : AGTGATAATATAATTAAAAAATACATGTCAAATATTTTAAATAGTTATATTGCTAATATTAACGAAAATAATCGAAATCAAATTTTTGTTGCATTGCAAAATTTAGAGGGAGCTATTGATGATTCATTAATGCTGGAAGATTTACCATTAATAATTGAGTTTGATGATGATTTGAAAAAACTTTTAAAATTTGTTGATTTACACATAGATTCTAAATTTACTAAGAATCCATATGCTATAATAGATCTGGTTCTGAAAATTCATCAATCATGTAACTTGAAATCGATCCCTGTGATGTGTAATTTGACACACTATTTAGAACGGGATCAATTGATAGAGTTATCAAGTTTAGCTCAACAAATGAATAGGATGGTAGTCCTTTTAGAATTTACATCCCCAGATTTATTGGTTGTACCTGAGGGTGTGCAATTTTATTATATTGATCAGGATCTAATCGATTTGTACTGACATCTATATTAAAACTTTATTATAAAATATCG # Right flank : CCAAAAAATGGTGTGGATAGTGTTTTAACCAGTTGTTTAGAAAAGATGCAAAACTTAATGTATTATTAACTAAAGAAAAAAATATATGTTTTAATTGTAAATATTATGTAGAAATTGTTCATCAACCTATTTCAGTTAAAGACGTTGTAAAACAAAATAAAGGATATTATTTCCTTGATGTTTTAGCTACAGTTATATTGTAATATTCACATTTAAAGGACTAATTATAAAATTATATATCTTATTTGATACAAACTAATGATACTAGAAAAGCACTAAACCACGTCCGGTTTAGCGCTTTTCTAGTATTGTATTAATTAAGAATGGCTGGTTTTATCCCATGAATTGTGTCCACTTAATTGTCTCACAATTGAACAAAAGGGAACAATAGCCAATACCCAGCGATATAAACTAAAACTGAAAACACTTTTTATAATTTGATTAAAACTCAATTTAATATTGCCTTCGGAGGCCTTTAATTGTTTTAAAACCATTAAAGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGGTTGTTAGATCAATGATGATTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGATGATTGTTAGATCAATGATGATTAGAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //