Array 1 936442-937628 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045958.1 Salmonella enterica subsp. enterica serovar Birkenhead strain AUSMDU00010532 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 936442 29 100.0 32 ............................. CCGCGCTGTTACCCAATTTTTATCGGGGTAAT 936503 29 100.0 32 ............................. CTTACCAAGGGCGGCTTGAGAGAGTTTCAGTT 936564 29 100.0 32 ............................. TTTTTTTCTTTTAAATCAGTAAAGAAGCGCCA 936625 29 100.0 32 ............................. AATGCGTTTTTGTTTATTGCTAACCTGGAAAA 936686 29 100.0 32 ............................. ATCACAGTCAACAAACACTCTGCGATTAATGG 936747 29 96.6 32 ............................A TGACTACCGGGTTATTACCAATATCATCCATC 936808 29 100.0 32 ............................. CAGTAGCACTCATGCCCCATTTTGCTACGAAA 936869 29 100.0 32 ............................. CACATTTCCTCAGTGTGCTTCAGAGGGTGGTA 936930 29 100.0 32 ............................. AGATCAGATTGATGCTGACTGTCAGCCTCAGG 936991 29 100.0 32 ............................. TATGACTAATGCACAGTTAAAACGGGTATGGG 937052 29 100.0 32 ............................. ATGCAAAAAGCTGAAGCGGAACGAATGAACAC 937113 29 100.0 32 ............................. CCGCCACATCGGAAACGGCAGTATTGCCACAT 937174 29 100.0 32 ............................. TTAATTTCGAGGCTGAATTAGACGGCGAGTTT 937235 29 100.0 32 ............................. AAACCGCTTTAATACGCGAATAACCGTCTAAC 937296 29 100.0 32 ............................. TGCCGGGGCAGTCGTGCCGATTAAGCGGGCTG 937357 29 96.6 32 ........T.................... AAATGTAATACCCGCCCCATACAGTGGCCTCT 937418 29 100.0 32 ............................. ATAGGCCGTGTGGAATGATCTCAGTTCTGCCA 937479 29 100.0 32 ............................. TCCCCTGACGCAGTGGAGTCGTTTCCTGTTGC 937540 29 96.6 32 ............T................ TGCGCGGTGCTGTCTACGAAATCAATATCCGA 937601 28 79.3 0 ...........C...A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAACGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCTCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 953876-955003 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045958.1 Salmonella enterica subsp. enterica serovar Birkenhead strain AUSMDU00010532 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 953876 29 96.6 32 ...........................T. CGCTGTTTCATGTCGTCAATAGCCTCCATAAT 953937 29 100.0 32 ............................. TTGCGCACGACAAAATTTTGGTTTGATGCAGC 953998 29 100.0 32 ............................. CGGTCCGGTTTTGCGATGCTCCAGCGCTCGAA 954059 29 100.0 32 ............................. GCGAATGGTGCTTGCACCTGAAGTTAAGCCCC 954120 29 100.0 32 ............................. CTATTTTCCTCGCATCTACAGGCAGGGTGAAA 954181 29 100.0 32 ............................. TCGGATAACGTTTCGTCAGCGCGTATCATGCC 954242 29 100.0 32 ............................. TATTCAGGGGCTACTAAACGGCAACGCAAAAA 954303 29 100.0 32 ............................. CTGGGAAGATTGGGCGCTTTCAATATCTTCCA 954364 29 96.6 32 .............C............... TATTCAGGGGCTACTAAACGGCAACGCAAAAA 954425 29 100.0 32 ............................. CTGGGAAGATTGGGCGCTTTCAATATCTTCCA 954486 29 96.6 32 .............C............... ATATTCAAACGGCGCGGGGGGAGACATCCGGA 954547 29 96.6 32 .............C............... GTTACAGTATCATGTAAAACTGTATAAAAACA 954608 29 96.6 32 .............C............... ATTGAAAAGCTGGCGATAAACAAGGCCCGCCA 954669 29 96.6 32 .............C............... ACGCAATTAAATCATGACGATTTGCGCGGCCA 954730 29 96.6 32 .............C............... TATCAGTACCACATTCCGTTTTTCGGGACGGA 954791 29 96.6 32 .............C............... AATTATCGGTATACGTATTTGCATCAATCAAT 954852 29 96.6 32 .............C............... TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 954913 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 954974 29 89.7 0 A...........TC............... | A [955000] ========== ====== ====== ====== ============================= ================================ ================== 19 29 97.8 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //