Array 1 648128-650719 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIRCB010000001.1 Salmonella enterica subsp. enterica serovar Mississippi strain FSL R8-1549 scaffold1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 648128 29 100.0 32 ............................. CTACAGGATCTAATTTTGATGGATCGGCATAC 648189 29 100.0 32 ............................. ATAGAGGATATAGACTATAATTTAGTTGTTAA 648250 29 100.0 32 ............................. CAGGTGCTTGGGATGGATGAAGTTGACGGGAT 648311 29 100.0 32 ............................. CGATCGGGGAAGCGCTCCGGGTCAGCAAATCA 648372 29 100.0 32 ............................. GCCGGGACCGCCGAGTCAGCGATCACGGTGAC 648433 29 100.0 32 ............................. TTCATTGCGAGATTCAACAAATCGCTCCGGGT 648494 29 100.0 32 ............................. CCTGCCGGAAACGTTTTTGACGCAACAACGGT 648555 29 100.0 32 ............................. TAACGGTGTGTGGGTCGGAGATGCCTCTGATG 648616 29 100.0 32 ............................. TTTATTATTTACGGCAGGGGCTAAGAGTACCA 648677 29 96.6 32 ............................C ATAATTTCATTATATACAGTATCTCCCGATAC 648738 29 100.0 32 ............................. ATAATAAAACTTTCATGATACCACCTAATCAT 648799 29 100.0 32 ............................. GTGGTACAATCGGAGGTGAAGGGGGTGTAAAA 648860 29 100.0 32 ............................. GATTAATATATGGCAGATACAATCGTTATTCC 648921 29 100.0 32 ............................. TAATATGAGTGAAAATAACAATTCATATTTGA 648982 29 100.0 33 ............................. GTAAATCAACTACTAATAGATTTTTATTAGTAC 649044 29 100.0 33 ............................. GTAAATCAACTACTAATAGATTTTTATTAGTAC 649106 29 100.0 32 ............................. GTAAATCAACTACTAATAGATTTTTATTAGTA 649167 29 100.0 32 ............................. CGACCAGGAGCTGCTCACGGAGAGCTCGCTGG 649228 29 100.0 32 ............................. CTATCATTAATAGATAATGTAATAGAGGCTAA 649289 29 100.0 32 ............................. TGATTGAGCTACATTATAAACGAATGATGAAT 649350 29 100.0 32 ............................. AACTGCAATTATTTATAGTAAATTATCCAGAA 649411 29 100.0 32 ............................. AATTTGCTCTCACGCCTGGCGACCCGTCTCGA 649472 29 100.0 32 ............................. TAATAGAGGCTAATATGTTTAAACATAAATTA 649533 29 100.0 32 ............................. CCAGTACCAATTGTCAAATAACCGCATTTAGC 649594 29 100.0 32 ............................. ACGGGGGCGTCATCCTCAACAGTGCAGGCGAT 649655 29 100.0 32 ............................. CCGGGGCCGCTTACGTGCTGATCCTGACGCTC 649716 29 100.0 32 ............................. ATGGACGAGAGAGAGCGGAAACATCATGTTGA 649777 29 100.0 32 ............................. TGTGATCTGATCGCCTCTGGCGTCACTGTACG 649838 29 100.0 32 ............................. GAGTATAGTTCTATGGGCCTGGAAAAACAGAA 649899 29 100.0 32 ............................. ATGGACGAGAGAGAGCGGAAACATCATGTTGA 649960 29 100.0 32 ............................. TGTGATCTGATCGCCTCTGGCGTCACTGTACG 650021 29 100.0 32 ............................. GAGTATAGTTCTATGGGCCTGGAAAAACAGAA 650082 29 100.0 32 ............................. GAGTATAGTTCTATGGGCCTGGAAAAACAGAA 650143 29 100.0 32 ............................. GCAACCAAAAAGGCCGCGAAATCGCAGCGCCG 650204 29 100.0 32 ............................. GGTGTAATAATAATTGGGATAAATTCGTAAGT 650265 29 100.0 32 ............................. TGAATAATATTACTCCCTTTTAAGGGAGTTGG 650326 29 100.0 32 ............................. TGCTTCTTCTGGATTTTCTTTAGGTTTCTCAT 650387 29 100.0 32 ............................. TGACTGTATCAGCCGCAGCAAACGCACACTCC 650448 29 100.0 32 ............................. TTGCCAACCCACAGCAGTCCGTCAGTAAAATC 650509 29 100.0 32 ............................. GTTATTCTCAAAACACCGCTACGCCGGGGTGA 650570 29 100.0 32 ............................. ACCATTTATTGCAGAGATCGTAACATCTAACC 650631 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 650692 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 43 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGTTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCTGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 667278-670480 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIRCB010000001.1 Salmonella enterica subsp. enterica serovar Mississippi strain FSL R8-1549 scaffold1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 667278 29 100.0 32 ............................. CATTTTTAGTTAAACTAGCTAATAATATAATA 667339 29 100.0 32 ............................. TGTGGCTTATATGAAATTTCCTATTAACATGT 667400 29 100.0 32 ............................. GTTGGGTAACTGAATATGTTTCTAATAATAAT 667461 29 100.0 32 ............................. AGAAGCGGGTGCGTATGCCGGCAGCAAAAATC 667522 29 100.0 32 ............................. ATGTCCGTAATCATTTTGGTCAGCCAGTATCA 667583 29 100.0 32 ............................. TTTCAGGCAATTTTTTCCGGCAACGGAACGAA 667644 29 100.0 32 ............................. CCACATTGAAATGCTCGAGGACGCCGCAGACC 667705 29 100.0 32 ............................. GCCGAATGCAAAACCCCCGCAAACAGCAGCAA 667766 29 100.0 32 ............................. TTTTATGTATGTATCTTTCAATATCAAAATAT 667827 29 100.0 32 ............................. AATTCCCGACCCCATCAGCAACATTAACTCCG 667888 29 100.0 32 ............................. ATTAACCCTCAAATGTGGTTATTTGCGCAGGC 667949 29 100.0 32 ............................. ATAGATTCTCTTAAATCATTCATTAATTTAAA 668010 29 100.0 32 ............................. CTGAATTGCTGCATCCAGGCGATCCGACCATG 668071 29 100.0 32 ............................. GATTAGTTTTACTGTAAGCCTTGTATGAATCT 668132 29 100.0 32 ............................. CCCCATATGGTATGGGGCCAGAGTAATCAGGT 668193 29 100.0 32 ............................. ATGCTGGATCAGCCACCACAACCATTTACCGG 668254 29 100.0 32 ............................. AAATTTATGAGGAAAATTATGTCAGACAGTAA 668315 29 100.0 32 ............................. GCCGCTTTTGTGGCTGTTTCCGCGAACTTAGC 668376 29 100.0 32 ............................. GGGATAAAGGGGACAAAGGCGATCAGGGTGTA 668437 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 668498 29 100.0 32 ............................. GGGTACCGGACAGGCCGATCACCTTTGTCTGC 668559 29 100.0 32 ............................. GTGAACATGATGCCTGGAGCACTATTTACAGT 668620 29 100.0 32 ............................. TCCCATTTATCAGGTGGCAGCGGCATTGATTT 668681 29 100.0 32 ............................. CCAGTGATAAAACCGCTGAAAAACGCCTTAAT 668742 29 100.0 32 ............................. GGATCAAACGGGTTACAATGCCGTCACTGAGT 668803 29 100.0 32 ............................. CGGTACCGAAAAAGAGTCCGTATTAAACGCAA 668864 29 100.0 32 ............................. AATGCAGTTTCACGCACACCTCGCCGGCAACG 668925 29 100.0 32 ............................. AACTCGCCAAATGGGAAGCGCGCGTTGAGAGC 668986 29 100.0 32 ............................. CCAATGGAGAGGACGCGCAAAAAACTTCTCGT 669047 29 100.0 32 ............................. TTCCGTCCGGGCTGTCTGCGCCAATCGTAATC 669108 29 100.0 32 ............................. TTCGATTACAGTAAAATTTATGTTTATTCAAT 669169 29 100.0 32 ............................. AGAAGATATTAAACCCCATATAAACCCCACTC 669230 29 100.0 32 ............................. TGTGCCCGCTGACAATACCGTGGGTGTAGGCC 669291 29 100.0 32 ............................. GGCCGTATGGCTGCGCTACTGGATGAATTGAT 669352 29 100.0 32 ............................. ATCGCCTTAACTAAGTGCTCCGCTTCTGGTAG 669413 29 100.0 32 ............................. ATCCGATCCACATCAGCAGCCAGCTCTTTAAA 669474 29 100.0 32 ............................. GCGATGTCGTGTCTGCTACTCCCCATAATGGC 669535 29 100.0 32 ............................. CCCCGGTCATTTCCTCTGATATCAACGAGTTT 669596 29 100.0 32 ............................. GGATCTTCATCGGATTAGACAAAGAGAAAACC 669657 29 96.6 32 ............T................ GTCAACGAGGGATTGAATTGGTGGTGTATTGG 669718 29 100.0 32 ............................. ATACATTCCTTACTCCTCGCACATTCACGAAT 669779 29 100.0 32 ............................. GAGCTGTATACAAACGGGAATATTCCGCTATT 669840 29 100.0 32 ............................. GTAATTACCGCACAGCGCATGATTTTAGTACG 669901 29 100.0 32 ............................. CCACAGCGCGAAAGAGGTCTATTCCTGGCTGT 669962 29 100.0 33 ............................. CTACAATGTCAAAATGATGCCAGTTATCCTGGT 670024 29 100.0 32 ............................. AAAGAAGAAAATACAATGCTTGTAATGATGAA 670085 29 100.0 32 ............................. GTTTTTTCTCAGCGGCTGGCAGACCTGATCGC 670146 29 100.0 32 ............................. CGAGAAATGAGTGCCATTTAAACCCCGCCCGT 670207 29 100.0 32 ............................. TGCCGACGATACCCTGCAAAATCTGCGGCGGT 670268 29 100.0 32 ............................. TTCGCCGTCGTGAAAGCGGGTGAGCATTCCAG 670329 29 100.0 32 ............................. GCTGATAGCCAACCTGTAAGTGATCGTGATGA 670390 29 100.0 32 ............................. CTTTCTTCAGACATTTCTCCAACCCGGCAACC 670451 29 100.0 0 ............................. | A [670478] ========== ====== ====== ====== ============================= ================================= ================== 53 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGTACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //