Array 1 154243-154806 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASJV010000002.1 Veillonella parvula strain K63 scaf_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ======================================================== ================== 154243 23 100.0 55 ....................... TTACTCATTTTTTTGAGAAGTAATTGTAATAGTTGGTTTTCCTGTTAAATTAAAT 154321 23 100.0 54 ....................... ACTAAGTCAAGTAATACTTCTTCTAAGTCATATTGTTGAGTGGTTAAATTAAAT 154398 23 91.3 56 ........G.....A........ CAAAACACCAACAATATTTTGTTTCATCTTTGACTAGCATTGTTGTTAAACTAAAT 154477 22 91.3 54 ........T.-............ CCAAACTTATCTTCTGTATTATCGAATAAATTACCGTACACGGTTAAATTAAAT A [154484] 154554 23 100.0 53 ....................... TATCCTAGGCACTAAATTTAGTAACCCCTACACCTATATTAGTTAAATTAAAT 154630 22 91.3 54 ........T.-............ GCCACTTCATGTGCTGCCCTTTCATCCATGCTTCAAATTTTTGTTAAATTAAAA A [154637] 154707 22 91.3 54 ........T.-............ CAAAAATCGTCAAAAAATTATTTAAAAATATTAGCAACTGCAGTTAAATTAAAT A [154714] 154784 22 78.3 0 ..-.....TT.......A....G | A [154795] ========== ====== ====== ====== ======================= ======================================================== ================== 8 23 92.9 54 AATCCCCTAATGGGGACGGAAAC # Left flank : GCATTCGAAGCATTGCTTAATAGGAAACAATATGATGCTATGATGCGGCGAGCTAGTAAGATGATTAACCCTATAGAGGACTCCTTACGAGTCTATGTCCTTGATGACATTATAAATATTTATACTTGGGGTATTGGAGAACGTAAGGAACAAGACTGTATCGTACTTTAAATATAAATAGTTACTCTCGATTAATACTGTTACGATGTAGAAGTGTAATTAACAATAATAGAATCATTAATATTGGTAAAAGTATTTCAGAGCTTGATGTTTTGTATTGATGATTCTATTATTGTATTATCTATTTTCTTATATGATATAATGGGTCTAGAATTTAACTCCTGAGAAATTAAATCTGCGCCGTTGTGATAGTGGTGCGGTTTAACGATATTATTTTAACTTGCTAAAGTGCTTTTTGAGATTAATTTGTAATCTCCGCCGTTTTTTGCATTTTGGAACCAGTAAGTATCTGTTGTTTCAAAGACAGTGTTAAATTAAAT # Right flank : GGCACTACCTTATTATTGTAGGTAGTGCCTTATGTATAATCTAAGGGTTTAATTGTTTTGTATTATAAATACTTAAGGTTTTGTTACTTTCTCTCTTGGAATGAAGGGTGGATTATTGAAATAAAATTAGTGATATTTATAATATATAATATATTAAGTAACTATATTTATTATTTAGTGTGTATGGGATTGGGGAGCTTTCAAAGGATAAATATCATTTGTCATTTTCTATTGGTCATGGTGAATTTATTTTCTTTGGTGGTAACGAGGTTTCACTCACTATTTATAACTGATTATTGTCATTGTTTTGGGATCCCTAGTATCCTTTATTTGCCTTACAAAAGCAAATAGCCTTCCATTACCGCATGGTAGCTAAGTAAACAGAAAGTCCATTTCCTAAGATGTCATTATTTTCGAGATGCACCTGATGTTTCGACTCGTCTGATTATCTTTTAATATGATAGAGATAAAGGTATATCATCAAATTAAGATGAATATGT # Questionable array : NO Score: 4.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:-0.73, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCTAATGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.86%AT] # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.90,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 209088-210501 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASJV010000002.1 Veillonella parvula strain K63 scaf_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 209088 36 100.0 30 .................................... AATTTGATGCTGCAGGCAATCTGCTCGTAT 209154 36 100.0 30 .................................... ACTTACCGAGATAACTTTATTGACCATTTA 209220 36 100.0 30 .................................... GGTTTTTAGACGTTAGAGAAGGCGGCGCGT 209286 36 100.0 30 .................................... CCAACTTGAGCATCTGTGAATCCCATGGAT 209352 36 100.0 30 .................................... ATGTCTTCATCGACATTACCTGTTAAGAAT 209418 36 100.0 30 .................................... GTATTAGGGATATTCATTATACTGGTGTTC 209484 36 100.0 30 .................................... TACCTATTGCAATTCCTTCGCGAACTGCGG 209550 36 100.0 30 .................................... CAAGGCTATACTCCTAATTTTACGTTTACC 209616 36 100.0 30 .................................... AGAGCCTATAGTGCGGATTTATTCTTGATG 209682 36 100.0 30 .................................... GTATCTGTTGATGTGAATGTAGTCAATGTA 209748 36 100.0 30 .................................... GAAAATATCCAATTCAAGGGGAATACATAT 209814 36 100.0 29 .................................... TAAATCGTGGAAGAAAAAAGTTACCGGTA 209879 36 100.0 30 .................................... TATGCCAACGGTTTATTATTTTGATGAATG 209945 36 100.0 30 .................................... TGTCACCCCATTAAGAGATTCAGTGAGTGC 210011 36 100.0 30 .................................... TACCGAATATCGCTTTATCGCCACCTGGTA 210077 36 100.0 30 .................................... ACGGGCCGTGATTTAGTGACGCCTACTGAA 210143 36 100.0 30 .................................... ACCCAATCTCGCCATCCATTGATACTGAAT 210209 36 100.0 30 .................................... AAACAACTCATCAATAGGGCGTTCATGCAA 210275 36 100.0 30 .................................... TATTGACCACTATTAATCCCGCATCACCTA 210341 36 97.2 29 ...................................T TTAGCACAGAGCTAGGTAGGTGGTTTTTT 210406 35 88.9 25 ...........................-A.A..T.. CATTAAGAACGTCCATGTACACAGA 210466 35 77.8 0 .G.........T...G..CG..-...........TT | T [210491] ========== ====== ====== ====== ==================================== ============================== ================== 22 36 98.4 30 GTTTTAGTACTCTGTAATTTTTCGCTATGATAAAAC # Left flank : TAGGTTGGGGGTTCGATTCCCTCTAGGCGCACCAGAAGGATAGAGCAGCAGTTTCGCCTTAATACTCGTGAGAATCTATTAAGGTAGGGCCTTATGCCGAAATCAAAGGACACAATTTATTGTGTCCTTTTCCTATTTTAATCATATTAAAACTATCTTTCTATCAAGATAATAGTTGAGTAATTATGGTTATTTAGTAAAAATTAAAACTGATTGATGAATAAAAATTAGAAAAGCTTGACATATAAGTAATGCTGATATATTATGTAATTAGATTTTACCATAGCGAAAGGTTACAGAATCTACTAAAATAAGACTTTATGTCGAAATCACTACTTTTAAGTAGTTATTAACAATAGTATATGTAAATTGAGTTAGTAGTACATATTACTAATGTTTTTTGTGTGAAATTTTGAGCACGGGTCTTATGATCTGTGCTCTTTTTGTTTATTGATTTATTATAGCGAAAGGCTACAAAAGTGCTTAACTTCGTTGTTGAG # Right flank : TTAGAATAATAGAAGAGAATAATTTTCTAATTATTATAATTTTATGTATTAAATAGGATTAATAATTTTTAGGGGAGGGTATATATGGGATATATACTAGGATTAGATATCGGGGTTGCTTCTGTTGGTTATGCAATAATTGATGAAAATTATAATGTCCTAATTAGTGGGGTAAGACTATTTCGTGAGGGTACGGCAGAAGAGAATGTAGCACGCAGAGGGTTCAGAAGTAGTCGTAGAAGTATGAGGCGGAGCCGTCATAGATTGGATCGACTAAAAGAACTCTTGTCGAGTGCATTAGGTGTGAGTGGAGATCAATTTTATACAAATCTCTATGAAATTAGAGTTAGAGGACTTAGTAATAAGCTTTCGCCTGATGAATTGATTGCTGCAATCATTCAATTGGCTAAACATAGAGGTATATTTTATTTAAGTCCAGAGGATCTTGCGACTGAGGACGGAAGTAACCAGAGTTCAGCAGATATTATTCGAACTAATGA # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTTCGCTATGATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //