Array 1 4472-6879 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNVC010000020.1 Lactobacillus delbrueckii subsp. lactis strain FAM 21745 FAM21745-i2-1_scf20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 4472 33 100.0 35 ................................. GTCACCATTTCTGGCGTAAAGTCAGTGTTGACCGT 4540 33 100.0 33 ................................. ATTTTCAGTAAGCCCTCCTTGCAAGATTACATC 4606 33 100.0 35 ................................. GTCGCCCACTTGGGTCACTTGGACAAGCACCATGT 4674 33 100.0 35 ................................. AAGCGATCTTGTCCGGTTGGTCAAAGGCAAGACAG 4742 33 100.0 35 ................................. ATCTAACCCAAAAGAAGGAGCGTCAGAAGAGATAA 4810 33 100.0 36 ................................. GACCAGGCTGTCCCAACATTTATCCGGCAAAAACGT 4879 33 100.0 37 ................................. TAGTTAATAGATGGCATCAGCGTGATGATCGCTTGCC 4949 33 100.0 37 ................................. ACAGTATCAAGGTCGTGGTTGGACACACACGTTTGCA 5019 33 100.0 36 ................................. TTATTGACAGTCAAGCAAAAGGTAAGAACGTTGCAA 5088 33 100.0 35 ................................. TCAAACAGGTATTAGGTGATAAGCCAGCAGATAAG 5156 33 100.0 33 ................................. CCACTGCTAAGACATTTAACAACTGTTCTTTAG 5222 33 100.0 34 ................................. AACGGAAGCAACCCGATACTGCCAGTAACGTCTT 5289 33 100.0 36 ................................. ATGACGGGCATCGGCTTAATTTCATGGGCTTTTGAT 5358 33 100.0 37 ................................. CAAGTTTGGGTTGCCGAACCAATTTAGCGTGTACGGA 5428 33 100.0 33 ................................. TGCAATGTAGGATTAAGCACTTGATCGCACAAG 5494 33 100.0 37 ................................. TCAAGGCCTTTGAGCCAGTCTCCCCAGTCAAAGCCGC 5564 33 100.0 35 ................................. TTATTGTGCGTGTACAAAGCCGCAAAGCCAGCGGC 5632 33 100.0 34 ................................. CAGATAGCCCGGCCTTGTCGAACGTCTCAGCCTG 5699 33 100.0 36 ................................. AGCGCATCGGTCATAGCTGATGCCAGGTCAGTCAAG 5768 33 100.0 35 ................................. AACGCTCCTACGGCGTAATCGGCGACCCGGAAAAG 5836 33 100.0 34 ................................. GGTGATAACCTCTGCGGCGTATTCCCGCTTTTGG 5903 33 100.0 37 ................................. TGGCGACTATGATATGCACGACTACCGGATGCTCTAC 5973 33 100.0 35 ................................. AACTTGATGGCAAGACTTATCCGGTCTACGCTAAC 6041 33 100.0 34 ................................. TCAATCCATGCACTGAGAGTAACCGTTTGCCCAT 6108 33 100.0 33 ................................. ACTGACTGGTGAAGACGTCAACCGCTTGCGTAG 6174 33 100.0 35 ................................. TTCTCCCAATCGCGAAAGTTTGGCTATGACATCAT 6242 33 100.0 34 ................................. GCGATCGGTGGCACTCTAGTGGCGGCTGCTTTGG 6309 33 100.0 35 ................................. CCGCATAACTGGCAGACAGGTTATTTTATTGACAC 6377 33 100.0 35 ................................. AGTCGATCACTGAAGGCGACGTATCCGTATCCTTT 6445 33 100.0 34 ................................. AACTCCATTGCTGGCGGAGCTATGGTCGGCAACT 6512 33 100.0 35 ................................. ACAGGCATGGCTACGCAGTTCAAGACCATGGGTGA 6580 33 100.0 34 ................................. TTGCCCTTGATCGTCATGACCTTGGCCGTCTTCC 6647 33 100.0 34 ................................. ACTGCCGACCGCTGCCACGTAAACTGCGTCTTGA 6714 33 93.9 33 ..............................G.G GCTGAAGGGAAAGTAGCAGCAGAAAGAAGAAGC 6780 33 100.0 34 ................................. ATTTGCTGGTACAAAAGTAACAGAGTTACAACAA 6847 33 84.8 0 ..........A...AA....T......C..... | ========== ====== ====== ====== ================================= ===================================== ================== 36 33 99.4 35 GTCGCATCCCGCATGGGATGCGTGGATTGAAAT # Left flank : CGGATACCCTCCGTTTTTATGGAAGTAAGTGATTGTAGATGATGATGGTAATTGTCAGTTATGACGTGAATACTGAAACTGCTTCGGGAAAGAAGAGACTAAGAAATGTTTCCAAAATATGTAACGACTATGGCCAAAGAGTTCAAAATTCAGTATTTGAGTGTCTTGTAGATTCTACAAAGCTTGAGGAAATGAAGGAACGCTTACTAAAGGTATATGATGAAGAGTGCGACAGCTTGTACTTCTTCAATGTAGGCAAAAAATATGAGAACAAAGTTCAGTCTTATGGGTGTAAACAAGTATTAGACTTGGGAAAGCCAGTTGTCTTCTAATTATCTAGACAGTGCGAGTGTGAAGCTAACAGAATTAGGCAGAGGATTCGCACTGTTTTTGACTATTTTTTTGTAGTCTTGAATATAAAATTGCAGTTTTTTAATGCTTTTTATATTTTGTATGCCCAATATTTAGCTGTGAAAATGCTTTTTTTACTAAATGTTGCG # Right flank : TATCGCTTAGATATGTGGATGCTTGATGGTCAAATTCCACTAAAAGCACTCCCTAGCGGGGTGCTTTTTAATATTTCGCTAAATCAAACGCTTCACCAAGCAAGCAGGAAAAGATTATAGTAAAATATACTGGTTATAAAAAAGCTGAGCCAAGCTCAGCATCCCCAAAACAAAACTTAGTTGAGGAGAACAAACACATGCAAGATATTTATATTGTTGCGGCCAAGCGAACTCCATTTGGCCGTTACCACAAGCAATTGGCTGACTTTTCCGCCATCGACCTGGGCCAAATCGCCCTGCACGGCGCATTAAAAGAAGCCGGCCTTGACGCCGAAGCCCTGGATGCCCTCTTCATGGGCAATGTCCTGTCTGCCGGCTTAGGCCAAAACATGGCCCGGCAAGTTGCCCTAAATGCCGGGATGCGGCAGGACTCAGTCGCCGTGTCCATCAACGAAGTCTGCGGCTCCAGCCTCAAGGCTGCCCGCCTGGCTGAAGCTCAA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCGCATGGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCATCCCGCATGGGATGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.40,-9.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 5347-7081 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNVC010000025.1 Lactobacillus delbrueckii subsp. lactis strain FAM 21745 FAM21745-i2-1_scf25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 5347 35 75.0 39 .C.T.....C...G.G.-...G...T.T........ GCATAGTGCGGATTGTAAGTAGCGACAAGCTTTGTTGCA C [5360] 5422 35 80.6 35 C..-.T.C......T...................AT GTGCAAAGCAGAATGAGTCTCCGTAAGGAATAAAA C,G [5451,5454] 5494 36 94.4 36 ....C..C............................ GAAAATAAAAAAAGTTGCAAGCGAAAGCTTGCTAGA 5566 36 100.0 36 .................................... AGAAAGAGGTAATAAAAATGATTTCCGAAAAAACTA 5638 36 100.0 43 .................................... AATACGACAACACTTATAACTATTGCGGTTATCTTGATAACTA 5717 36 100.0 37 .................................... TATGATGAAGATTTTAGAAAAGAGATGGAAAATTTCA 5790 36 100.0 37 .................................... CCGAACAAACTAGAAAAGCTATGTCAATAGATATCAT 5863 36 100.0 41 .................................... TCACCTAACCGAGCAACAAAAAGAAAAATTCCTCACTCACA 5940 36 100.0 39 .................................... ATTAAAATGAATTTAAAAGAAGTTTTGCAAGAAATTACG 6015 36 100.0 36 .................................... GCAAAAGGATAGCGTGATCAGTCACATGGACGACGT 6087 36 100.0 38 .................................... TTTACTACCGTTCAGTACTCGTTAGATGTTAGTCAAGA 6161 36 100.0 37 .................................... CTGTTAGACTTGAGACAAATCAAAAAAAGGAGACTAA 6234 36 100.0 41 .................................... CAGTATCGCTCTGATTGTGAAGAATGGTTAGAGGACCTCGT 6311 36 100.0 42 .................................... GAGATCAAGAAGTTTATCACCATGAAAGAGTTCACTTACAGA 6389 36 100.0 38 .................................... ATCAACGCTCTTTGGAAACAAGTTTGACCAGTACTTGA 6463 36 100.0 38 .................................... ATGACTAAAATTGAAAGTTATGTAACTCGTGAAATTGG 6537 36 100.0 37 .................................... GAAAACCTAGAAAATGACATGCAGGAAAACGGTGTTT 6610 36 100.0 37 .................................... AATATGTGAGTTTGTTAACTTCGTTATTTCTGAATAT 6683 36 100.0 38 .................................... GCAAGCTCTGCTAGAAGCATCTAAGGAGCGTGAAGCAA 6757 36 100.0 34 .................................... AGACAACTCCTATAAACCATCGGCAGAAGGACAT 6827 36 100.0 37 .................................... GAATATTCGTCAATGGTTGAAGGCCCACAAGTCCAGT 6900 36 100.0 37 .................................... TTCAGCACAAGGTTAACGGACAGTGGATTCTCTATAA 6973 36 100.0 37 .................................... GGAAAGAAACTTGCAAACAGTTGTAAATGACTTAGAA 7046 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =========================================== ================== 24 36 97.9 38 GTTCTCGTCTCCTTCTAGCGGAGATAAGTTGTTAGC # Left flank : TGGCAAAAATCCGCACGCTGAAGCGTTTGATCGCCCGGCAGACTTGAACTAGATAAAGTAGCGATAATTGGATTAAACGGTTGGCCAGGATCTTATGGTTCAGCAAGTCATACAAGCCTTGGACCAGCTGCCCTTGAAAGTATGGTCCAGCGCAGCGACCATGCCGATATTGTAGATCAAGCCTGAAATAGTAACGACCACAAGAATTGGCGCTTCTTACCAGAAGTAGCTGCTCATTTTCTTGGGGTCGCGGGTATTTTCTGCTTCATCTCGCTGCCTCCTCTGACTGCAATTTTGCCCGCTTCTCTGCATCCGCTATCAGCATTTCCACCTTCATCATAGCACCGATTCTTCTTCAGTCTAGTCCATTTTGGACGGAATGAAGGAGGTTTTTTATACGAAAAAACGGCCAGCAACTGGCCGTTTGGCTTATGTCTCCTTTTAACGGAGATTGTGCATTGAAAATAGATTGATTAATAATATAGCTCTTTTCTTTAAAT # Right flank : CAGATCCTGTTTAAAACGTTATTACGTCGCGCATCCCCAAGCATTTGTCTCGTCTAAATCCTGGTCAACGCCCATCAAACAGCATCCCTCTTTGTCCTATTTTTGGACAAAAAAGGCACCTCTGCTAATTGAGAACATATAAATTATACCACACCAGATGCTACACCACGATCACCTTAGGTACTGACACTGCCTTCATTGGTGCGTCTGGACCCAAAATGTTAATCTGCTTGTTATTCACCTCATCTGGCAACAGATATAGAGTTATCATTCCATCATCTGGAACTTCTTTTTTCAAAATCCCAATCAAATGGTCTTTCGTAGTATCTGACTCCACCTCCCGTTCATACAGGCTGTACTGCTTCATGTCAAATCCCAACTCAACCAGCCGTTTCCTGTATTCCGCGGCTTTCTTTCGCTCTTCTTTGGTATTTCTAGGCAGATCAAAGCTTAAAAGAAGTACCATCATTTTCCTCCTTGAATGAAAGTCGGCAACTTCA # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCGTCTCCTTCTAGCGGAGATAAGTTGTTAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [21-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA //