Array 1 101183-105414 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLGH010000002.1 Clostridium perfringens strain QHY-12 NODE_2_length_247090_cov_280.391688, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 101183 30 100.0 35 .............................. CCTGAATTTATTTTGTCTACTATTCTAGAATTCAA 101248 30 100.0 35 .............................. AGGCAGGTGGAATATATGACCAAAATAGGAATAAC 101313 30 100.0 35 .............................. ATTAACTGGCTTAATGGACACACTAAGCTTAAAAA 101378 30 100.0 35 .............................. GAAAAAGGATTAATAAAAAAATCTTTTACAACAAA 101443 30 100.0 35 .............................. CAGCTAATGGTTGTGTTATTTTTCTTAGTTTTTCT 101508 30 100.0 34 .............................. CAAAAAGTGTATGTCATTCATTTTCAGCACTTGA 101572 30 100.0 36 .............................. GCTTAGAAAAGAAAATGAAACACTAATAAAAAATTA 101638 30 100.0 36 .............................. GTCACCTCCCTCACTTAGATATTTGCAACAAAAATG 101704 30 100.0 35 .............................. TACCAGTTCGAGTTTGATTTTAAAACTTCTTTCGT 101769 30 100.0 36 .............................. TCAAGTTCTTTAGTCTGTAAATCAATAATTTTCAAT 101835 30 100.0 36 .............................. TGCAACATCAATTAGTAGAAATTCTTTTTCTGTATC 101901 30 100.0 35 .............................. ACTACTCATTATTATACCTCCTATATTGTTTCACG 101966 30 100.0 37 .............................. AGTATTTAGATAAAAGTTTATTACTAGCTTTATTATT 102033 30 100.0 35 .............................. TATGCATTAATTGACGGAAAAAGAGATATTGATAT 102098 30 100.0 34 .............................. CTTCATCAATATTTGTTTTTGATATTCTTTCAAG 102162 30 100.0 36 .............................. AAATGATTTAAAAACTATAAAAAATTCTATTAATAC 102228 30 100.0 36 .............................. AATCAACCAGGATATCAACTCGATTCCAGTTAGAAT 102294 30 100.0 36 .............................. ATTTCTACAAGTTGCCAACCATCTTGGGCAACTACT 102360 30 100.0 35 .............................. ACAAGAAGATAAAATTAGTATTTTAAGTAGTGGAG 102425 30 100.0 36 .............................. CTGGTTAATTGAAAGACAAAAAGGTATTGGTGGTTC 102491 30 100.0 37 .............................. ATATTATTGTTGTACATGTTGGAAACCAAGTGAACAA 102558 30 100.0 36 .............................. TGAATATGGTTTAGCAAATTTAGTCAACAAATTACT 102624 30 100.0 36 .............................. AGTTCTAATTTAACTATGCCTTCACAATTAACAAAT 102690 30 100.0 35 .............................. TACTAAAGAATTAGCATCAGAAATTAAAAAAGCTA 102755 30 100.0 36 .............................. CCAACGCTTATAGAATCAATTAAACTCATAACCTGT 102821 30 100.0 37 .............................. ATTTTTTTCTAATTGGATAGCACCACAACCAATTAAT 102888 30 100.0 35 .............................. ATTATCAAGTTCAAAACACTCAAACTCATCTTTAT 102953 30 100.0 36 .............................. CTACTCATTATTATACCTCCTTTAAATTGTTTCACG 103019 30 100.0 37 .............................. GGTTCGACGCATTAAAAACCCAGGCGCCATATTTACT 103086 30 100.0 36 .............................. CAAGGTTTACGCAATGTATGTTGACAATAGAATAAT 103152 30 100.0 36 .............................. CCTTTTTGCCCTTACTGGGGATGAAAAATTATCCTT 103218 30 100.0 36 .............................. TTTTTCCCGCTATTACCAGGTTGTTTTTTCCATGTC 103284 30 100.0 36 .............................. GAACATTAAATATATTAAGAAGTGTTTCTTAAATGG 103350 30 100.0 37 .............................. ATTTTGTTGTATGCTATCTCCAAAACCTAACATACCG 103417 30 100.0 37 .............................. AAAGATCCTAATCCGTTTAATACATATTCACTCATTG 103484 30 100.0 37 .............................. GGGTATGCAATGGGAAAGAATATACTACACCTGAACA 103551 30 100.0 36 .............................. AGGAGAACGTAGAAGATAAGATAACTACAATGTTAG 103617 30 100.0 36 .............................. ACTGCTTCAACATTTTTGGGACTAATTACAAGACCT 103683 30 100.0 35 .............................. CTACCGATAATACTTCAATTAATAGGCTTATCAGA 103748 30 100.0 36 .............................. TTATACTCATGCATTCTCTTACTATCTATTTTTAAT 103814 30 100.0 34 .............................. CACCTAAAGCCCCAGTTAAAGCTAATCCAAAAAT 103878 30 100.0 36 .............................. CTCTAAGAAAACAATTAGGAGCTAAAAAAGATAAAA 103944 30 100.0 36 .............................. AACAGGACATTCTTTAGTTATGCAAATAGAATTAAG 104010 30 100.0 35 .............................. CCATAGATACAATGTGTTACTGAAACTTTAGTATC 104075 30 100.0 36 .............................. ACAACTCTCAGATTCTATTTAACTAATTTAAGTTTA 104141 30 100.0 36 .............................. AATGGTATTTTATAAAAATAATAGGAGGTAAAAAAA 104207 30 100.0 37 .............................. AGCATTGGCAAGTTCTACTGTATCTCTGCTATGATCC 104274 30 100.0 36 .............................. TTTTAGAGTAATTTCATCTTTAAGTAAATTAATTTC 104340 30 100.0 35 .............................. TTATTTTTTTCTTGTGCAAGTTTAATTGGATCTGC 104405 30 100.0 36 .............................. TGTATATCAGAAAACATTATTTTTTTCATTTCTGCA 104471 30 100.0 35 .............................. AAATCATTTAATTGGTGCATTTTAACTCCAAAAAC 104536 30 100.0 36 .............................. AGGTCATTTTTTATTTATTTTATATTATTTATTATT 104602 30 100.0 36 .............................. AATTCAACAATATTTTTAGCATATTCCAAACATTGT 104668 30 100.0 35 .............................. TATATTTTTGTGCAGTATAATAAATTCTCTTTCCG 104733 30 100.0 36 .............................. AAAAAAAATAGCACTTGCCGAAGTGCTAAAAATGTA 104799 30 100.0 37 .............................. ATCACGGAGCCGACGGTGGGAATAGTGATAAAAGATT 104866 30 100.0 34 .............................. CAGTAGTAAATAGTAGGTATATAACACATCCTGG 104930 30 100.0 35 .............................. GAAGAATATGATTCCGACCCACCATTTTAAAATTA 104995 30 100.0 34 .............................. TCAAAGCAACTCCTAAAGTATCTGCTATTTTTTG 105059 30 100.0 36 .............................. GAAGTTATTACTTTCTAAAAAGATTAAGAATTTAAG 105125 30 100.0 36 .............................. TGTATATACATTTTGTATATACATTATAAAATTCTT 105191 30 100.0 35 .............................. TTTTATAAATCCACTCAATAATAGCCCAAGCTAAC 105256 30 100.0 35 .............................. TATACTTTTGTGCAGTATAATATATTCTTTTACCA 105321 30 100.0 34 .............................. ATACTTTTGTGCAGTATAATATATTCTTTTACCA 105385 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 65 30 100.0 36 ATTTAAATACATATCATGTTAAGGTTCAAT # Left flank : TTATATTTTTCAAATTATATTACTTTTGATTATATTACTAGCTTTTAACTCTATCATAATTCTTTATTATATAGATAATTAATAAAATAATAGAGTAAAATACTGAAATATTTTGAAATATGTAAAATGTACTTCCTTTTACCTTGTCCTTTTCATCAAATAAATATTAAACAGGCCAAAAAGAAATGAAACATAGAACTCCATAAATACTTATAAATGATCTTAATATAATATTCCAATTTTCTCCACACATCCATGCTAAGAGACAAAAACTTAAAAATAAAGCCATTCCAAGATTCATAACCCTTATAAAAATATTAGACTTTTCTATATCTTGCCACCACCAGAATTTCAAAATATTTTTTATAATAAAAGATAGTTTTTTCATATTATACCCCTACTTAATTATAAAACTTTATATAGAAAGACATTAAGTAATTATATTATACTGAAAAACAATATAAATTAGTTACTTAATTTTTAGTGAATTCAGTATTAAT # Right flank : TGCTTGTAAAATAGCCATTTTTAAATTTAATAAATATATCTTAATCTAGTTATTTCAATACTTATACTATAATTTTACCAGTGTTTTATTAAGAGTTAAAGAGGATATCGAAAATCAGTCTAAAACTTAGTTGTTTCAAGGGTTTCGCAAACTTTTTCCCACTTAAATCACTGGTAAAATTATATGTTATTTTGAATTAATTATTAAAGTATCAGTGTTTCCCCATTAATTACTTCTTGAATTCCTAGCACTTCTTCTCCAAATACATTTCCGTTTAATAATTTAACAATACATATGAAGTCTTCATCTTTTTCTATTACTTTATTTAAATCCTTTCTTAAGTTCATAAGATTAGCAGGGGTTATTTCTCCCCTAAAAACTGATTTTTGAAAATGAGATAAATACTTCTTACAAACTTTAAACACCCTATTTACCCTCTTTTCATTTACATCATAAAATACAAAAGCATAATTATAATTCATTTTACTTTTCATATCTTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATATCATGTTAAGGTTCAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [85.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 117858-115587 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLGH010000002.1 Clostridium perfringens strain QHY-12 NODE_2_length_247090_cov_280.391688, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 117857 30 100.0 36 .............................. GTTGAAGTATTTTCTTACTTTAACTTATAAGGAAAA 117791 30 100.0 35 .............................. ATTAACTTCTGAGGAAAGAAGTTACTATAAAGCTG 117726 30 100.0 35 .............................. TTTAAAATTAAATCTGTGCTATGTCCAGTCCATTT 117661 30 100.0 37 .............................. GTAAAACCTGTCCCCATAAAAATAAATTCTTCTCCAA 117594 30 100.0 36 .............................. TGTTTATGAGGTGATTAAAATGTTTGTAAAAAATAT 117528 30 100.0 36 .............................. TGTTTATGGTCATTTCTATTTGTGACATCAGATACG 117462 30 100.0 37 .............................. AGAAAAGTGGCGAGAACATGGAGCCAGTAGGTGACGG 117395 30 100.0 37 .............................. TATGGTAAATATCTGTTTATAGAACACGCAGAAAATT 117328 30 100.0 35 .............................. TAATTATAATTTAGGAACTCGACCCCCTCTCTGTC 117263 30 100.0 36 .............................. GCGAGGAATTTGACGATAAGAACCCACCTACACCGG 117197 30 100.0 36 .............................. TGCGGATTATAAGAACCAGGTCGACGATAAAATAAA 117131 30 100.0 36 .............................. TTTGAGTTGATGGAATACGTACTACCACAGAGTAGG 117065 30 100.0 36 .............................. TTATTGAAGAGTTTTAACTTAGAGCATATAAAGACT 116999 30 100.0 35 .............................. TGCCCTATTTCTTCTCTTAAGTTTCTAAGAGCTTC 116934 30 100.0 37 .............................. AATGGAGAGTATGAATTTGATGGTTGTAAAGCTAAAA 116867 30 100.0 36 .............................. TTGGATACATATAATTGAATGATAACGGGTTTGGAA 116801 30 100.0 36 .............................. ATAGGCATTTTTTGAAATAACTCAATCATTTCACTC 116735 30 100.0 36 .............................. AAATAGTAATAAAAAAGAGTATGTTTAATGTTTAAC 116669 30 100.0 36 .............................. GCCTATCTTTTACTAACAATATAATTCAAAAGTAGT 116603 30 100.0 35 .............................. GGTAATTCCTTTCAATTAATAACTTTCAGGTAAAA 116538 30 100.0 36 .............................. AAGAAATTTCAGGTAAGGGAATGAGTGAGGTGGTTA 116472 30 100.0 35 .............................. CTAACATCCTCTAAGACTTTTACTAAGTCGGTAAT 116407 30 100.0 36 .............................. TAACCTCAACATGAAGTGGTCCATTTTCTCCTATAA 116341 30 100.0 36 .............................. CACGGAAACCAACTTATTTGTCCTATTTCCTGTAGC 116275 30 100.0 35 .............................. ACTAATTTAATCTCACCTTTAGAGTCTAAATACAT 116210 30 100.0 36 .............................. TAGATAAACTCATCGTCAAAACCGCTTTTGAACTGA 116144 30 100.0 36 .............................. TACCAACGTTAGTATTAGCGTTACTACTTGCAGCAG 116078 30 100.0 35 .............................. ATATCAACTTCATGCTTTTTTACACTAGTTTTATC 116013 30 100.0 36 .............................. AGATGTTACTTAAAAAGAATTAGATATCTTTCGAAT 115947 30 100.0 36 .............................. TTTTTCTTATGCCATAATGCTATAAGCATATTTGAA 115881 30 100.0 36 .............................. GCTAATTATTCCAATGTATCTCTTTTTAAATCTGTC 115815 30 100.0 36 .............................. TTAAAAAAGAATATATTTTTATGCTGAGATTTACAA 115749 30 100.0 35 .............................. CTAAGAATGTGAAAATCTGTAGAATTTATTGCGGT 115684 30 93.3 36 ...............AG............. TGTTCTATGGCCTTTATTTCTATAAGTTTATCTATA 115618 30 90.0 0 ...A...C......G............... | TT [115591] ========== ====== ====== ====== ============================== ===================================== ================== 35 30 99.5 36 ATTGAACTTTAACATGATATGTATTTAAAT # Left flank : TAAACTTTTTCATAACAATATACCTCCTTTAAAATAAAAAAGCCAGAGAAATATTATAAAAATATCTCCCAGGCTTTTATCCTTCCGTGTTCACAGTCTTTCTGTGCGTTTTCTCTTGGACCAGACTAACTAAAAAGTTACGGAACCCTAGAAAACTTTATATTATTAAACTTTAATTAACAAATTCAAAATTATAAATTAATTTTAGCATAGTATAAATGCTAAATCAATTCACTGATAAAAATTTGAAGCTTACTGAATAGGTGAATTTTAGTATTTAATTAATGTATTCTTAGAAATATTTATAAATACACAAATAAAATTTTACCAGCCTAAAATTATATGAAATTACCATTTAGACCTTGAAATAACTAGATTATAAGTTGATTTTATATTAGTGCTTTAAATTAAAGTAAAACACTGGTAAAATAATAAGAGAGATATTGAAATAACTAACTTAAAGATAAATATCAAGAAAAAGAAATGGCTATTTTACAAGC # Right flank : AAGAACTTTAAATATTAAATTGTTGAAATAGGCATATTGCAATTACTTTTTCTAAGCTGATTAAAATACTTTTATTATTAACTAACATTTTATTAAATAATTAATATTACAAAAATGTATAAATTTATAAAATAATTATTTGTTTTATAAAATTTGTTGGGTAAAAATTATAATTATAACTATAATATGTAATATTTTTGTAAGATGAAAAGAAAAAATGCTTTAAAATATTAAAATGATTAAAAGATAAATTTTGTAAAAATAGTTTTTATTGGTATAATTAAAACATCAAATGTATTTAATTTATATAATAAAGTTTTTAATAACTCGTAGAGTATTTAAAGAATGTCTTTAATGCATAAAATATTTTAACCATAACATTAGATGTACTAAACAAAAGATAAACTAAATTATTTGATTTTTCAATTAATTATTTAAAATCAATTTTAATAAAAATACATTAGATTTATATAAGGAGGTGAGTATGGTGAAAGTTTTTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACTTTAACATGATATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 3 146739-151868 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLGH010000002.1 Clostridium perfringens strain QHY-12 NODE_2_length_247090_cov_280.391688, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================================================================================================================================================================================================================== ================== 146739 29 93.1 38 A...........A................ AATCTTTCGAAACAATTTTTAATGGAAGTACAACTATG 146806 29 100.0 37 ............................. GGAAAAGGAAGGTGTAGGATTAGATGAAATAAAAGAG 146872 29 100.0 36 ............................. GAATATAGAAATGGATTAAGAAGACTTGTTTTAGGG A [146874] 146938 29 100.0 37 ............................. GAGTCGCTTTGGATGTAAAATCAAATGTGTTGCTTTG 147004 29 100.0 37 ............................. CAATCTTTTTTCTAATAGAAATCTGAGTTAATCCACG 147070 29 100.0 38 ............................. CTCTTCAAGAAAAAATAGAGCCAATAAATTCAAAATTG 147137 29 100.0 39 ............................. TTTATGAACACAAAAGAAGTTAACAAGAGTGGTATCATG 147205 29 96.6 37 ......................A...... TACTTGGACTCCTAACAATGGTAATATAGATTCTTTG 147271 29 100.0 37 ............................. ATGTTTCTTTTGCTCTTTTAATAATTCTAATGAACAG 147337 29 100.0 35 ............................. ATTATCTAAATATTCTAGCAACCTACTTGCATTTG 147401 29 100.0 35 ............................. CTACAAGAGTGTATTATTCTCCTTCAAAAATTAAG 147465 29 100.0 37 ............................. AATAGATTTCCCAATTGAAGAAGGAATTGTAGAATAG 147531 29 100.0 36 ............................. AGCTTCTTCTGGAATGGCCAATGTGGCTGGGGCTAG 147596 29 100.0 37 ............................. ATGAGAGTAGATGATTATGTGATGTCGTTTACTCCGG 147662 29 100.0 38 ............................. GGGAGAATAAATGTCTAATATAGAAAGAATAAACTTAG 147729 29 100.0 38 ............................. AAATTAACTATTTCAGATGGTTTTATAAATGATGCAAG 147796 29 100.0 36 ............................. ATATAAACCATCCAAAATAGCACTATTTATTTTTGG 147861 29 100.0 37 ............................. TCCCGCTATTCCTACGCCTTGGCTTTCTTTCTTAGTG 147927 29 100.0 37 ............................. TTTAGACTTAAAGCGTCCTCTTTCTTATAACTAACTG 147993 29 100.0 37 ............................. ACTCATTTTTACCCTCCTAAGCTTATTTTCACTCAAG 148059 29 100.0 37 ............................. TGTTATGAAACAGTATGGAGAATTTAAAGAGGACATG 148125 29 100.0 36 ............................. TTAAAACTACTTGTACCACTTATAGAATTTTCAAAG 148190 29 100.0 37 ............................. GAAACTATGCTACAACGACAGAGTTACCTTTTTAGAG 148256 29 100.0 36 ............................. GAGAAAGTCTTAACTTGCGCTAAGTTGTATTTGTCG 148321 29 100.0 36 ............................. CGAACCCAAAGGCTCTAACATGTATATGTTTCACGG 148386 29 100.0 37 ............................. TACTTAAATGTATTTTCTTTATAATGTTGTCTACCGG 148452 29 100.0 37 ............................. TATCATCACCAAAATGTCTTTCACTCGATAGTATAAG 148518 29 100.0 35 ............................. CTAAGAAGTTTTCAATTTCCTTATTGCTAAAAAAG 148582 29 100.0 36 ............................. TTAGAAAATATAGACCCACCGCCATTCACTTTCAAG 148647 29 100.0 37 ............................. ATTTACATTAGCAGTAGCAAGACAGTTTAAAAGAGAG 148713 29 100.0 37 ............................. GGCGTATCGTAAGTACTTCCATTCCATTTAGCAAAGG 148779 29 100.0 35 ............................. TAATACATCTTTTTCTAATTCTAAATTAGTTAATG 148843 29 100.0 36 ............................. TGGTTGCCCTTTTACTCTTGCTGGTGTTAGGGTTGG 148908 29 100.0 37 ............................. AGTAAAAATAGCAGCGTTAATATCTCTCTGTAAAGGG 148974 29 100.0 224 ............................. CCTTGTAAAATAGCCATTTTAACTTATTAGATTTTTATCAAAACCTAGTTATTTCAATAAGTATATCATAAATTTACCAGTATTTCACGCTTTTTCAAAGTACTAAAATGAAATAATCTTTAAATCCTCTTATTTCAATGCTTAGATCATATTCTCACTATCTTTTTTACTGGTAAAATAATTAATACTAGAGCACTTAAATTTCATAATAATATTTAATTTCC 149227 29 75.9 26 .A.T....G....T..T.....A....C. CCAAAGTATCTCACTATAAGTTACAA C [149237] Deletion [149282] 149283 28 69.0 8 C.......-T.TTT.AAA........... AGCTTCTA Deletion [149319] 149319 29 69.0 38 .GG.G..TA..GTT.A............. TACCATATAAACAAGATAAAAAAGATATTTTAATCAAG 149386 29 93.1 37 ...........T.T............... TTTAAAAAATAATACTCTAATTAACAATAAATTAGTA 149452 29 82.8 5 ...........T.T...........AGG. TTCCA Deletion [149486] 149486 29 93.1 36 ...........T.T............... AAATTTACAGAGAAAGAGAAAGATCCTAACTTTTAA 149551 29 93.1 36 ...........T.T............... GTAGAGTTCCAGGAGGCTATAGGTAACATAATAGAA 149616 29 93.1 37 ...........T.T............... ATCTATATTTTTATATTTGCTGCCTATCTCTATTAAA 149682 29 93.1 36 ...........T.T............... CCTACAACGCATGTTGTTATGTATATAGGTAATGAA 149747 29 93.1 37 ...........T.T............... TCAAATGGATGGCTTAGGTTTTAAAGGCGTTTTTGAA 149813 29 93.1 36 ...........T.T............... GATAAGATTAATGGTATGTATAAAACTGTTACGGCA 149878 29 93.1 37 ...........T.T............... TTTCCAACATAAAAATATATTAAAAGAATTAGAGTAA 149944 29 93.1 37 ...........T.T............... AATTTTATATTTTGGTGATGCTAGAAATAATAAAAAA 150010 29 93.1 36 ...........T.T............... GTAACGTCAAAGGTCATTCCCTTAGTTATTGACAAA 150075 29 93.1 37 ...........T.T............... CATACATACTCAGTTTTATTTGTGCCAATTTCTAATA 150141 29 93.1 37 ...........T.T............... TTTATACCTAATCAAATTAGTAATTTGAGCTATACTA 150207 29 93.1 36 ...........T.T............... ACGCTGAGGAAGAGGAGAACTTTTATGTTGCTCAAA 150272 29 93.1 37 ...........T.T............... TATAGTGTCTAAGGCTAAAGTTGACAGTATAACAGAA 150338 29 93.1 36 ...........T.T............... GCATCTTCTTCAATACTTCCAGTATCTCTTAAGTCA 150403 29 93.1 38 ...........T.T............... TTGCTGTTTTAGCTGATTCAACATTTTTAATTAATTCA 150470 29 93.1 37 ...........T.T............... ATTTGTATGATCTCGTTAGTGTCGCACATTTTAAGAA 150536 29 93.1 37 ...........T.T............... CCACAACTCATTATATCATACCATTCGGCAAACCTTA 150602 29 93.1 35 ...........T.T............... AACCGCCTTATTTTTTAGGTCACCTTCTAAGATTA 150666 29 93.1 38 ...........T.T............... AAAGAAAACATTTGTTTTTGTTTACGTTATTTCAAGAA 150733 29 93.1 35 ...........T.T............... TAACTAATCTACCTTTATTCCTAACTTCTTCGCTA 150797 29 93.1 37 ...........T.T............... CGAGGATATTTACCACCAACAAAACTAAAAAAACATA 150863 29 93.1 37 ...........T.T............... ACAATGGAAAAGATGCTATATTAATCGAAAACAATAA 150929 29 93.1 37 ...........T.T............... AAGTGAGTTTAGAAATCCAATAACTAATGGAGGATAA 150995 29 93.1 37 ...........T.T............... GTGTAAGTTAATCTCAGTAGCAATCCACATACCATAA 151061 29 93.1 37 ...........T.T............... AAGCTCGCTGCTATCAGTAAGAATTATTTTTCTCTCA 151127 29 93.1 38 ...........T.T............... ATATCCTTTATAATTTCTTTACTATAAAACTCTTCAAA 151194 29 93.1 36 ...........T.T............... TAGTCATATACTTTGTTATATAAAATGCAGAACCAA 151259 29 93.1 36 ...........T.T............... TATTATCGCCCAAGCCAACTGAATCCCACTCCACAA 151324 29 93.1 227 ...........T.T............... ACTTGTAAAATAGCCATTTTAACTTATTAGATTTTTGCGAAAATCTAGATATTTCAATAGGTACATTATAATTTTACCAGTGTTTTGTAATTTTTTAAAGAGCTTAAATAAAACAGCCCTTAAACCCACTTATTTCAATGCTTATATCATATTCTCACTATCTTTTTCACTGGTAAAATAATTAATACTAGATCCCTTAAAAATTCATAATAATATTTAATTTCCTA 151580 28 75.9 37 ..A.T....-...TC.T.....A...... TCAAATGCTTGAAACTGCTAAGAAAAAAAGTTATATG 151645 29 93.1 37 ....................T.......T AGAAAGGCATTGACCTACGCCATATGTAGTAAATTTA 151711 29 89.7 36 ...........T.T......C........ GAATCCAATACAGAGAAAGAAAAGGGACAAGCTTCG 151776 29 86.2 35 ...........CTT......T........ AAGAATTTCGAAAAAGAAACTCTTTAACCAAAGCG 151840 29 86.2 0 ............T.......T.A..A... | ========== ====== ====== ====== ============================= =================================================================================================================================================================================================================================== ================== 74 29 94.7 41 TTTAAATACATACCATGTTAATGTTCAAC # Left flank : TTAAAAGCTCTAAGCCTGGATAGTCCTCTAAAATATTAAAACTTAAGCTTTTTATGAACTCCAAAGACTCCTCCTTGCTTTCAAAATAATAAATAGTTTTTCCTCCACCTCTTGTTATAAAATTTTCTTCCTTTAAGCCTTTATTATAATAATCCTCTGAAAAATCCTTAATAATAAGTGAAGCTCCTATAGCATCCTTAAGCTTATTGCTATTAAAAATGTATGTTTGCTTTTTACCTAACTCCCATAAAACTAAACTCCCCAAGGTGCGACACCTTCCTTCCATTTTTTGCTTGCAATAGTATTTTACCACAAATTATTATTATTAATAAATAATACTTTTTAAAACATATTTTAACAAATTAAAAAAATATCAGATAATCCTGTATAAACAAAATTATCTGATAAAAAAGGATATATGGATTTTTAACTTAACTTTAAGTAGATTTTAATATAGAAATTCTTAGATATATGATCTATTAATCTTCAAAAATAAAAAA # Right flank : CCTAGAGCAATAAGTCCAAAGAGAGATAAAATAGGTATATTTTAATTTTACCAGTATTTTATATTTTTTAAAATGTTTAGGTGATTGTATAAAGTAAGTTATAAAAAATAGATAGATCAAGGTGATCTACCTATTCTTCTTATATTTTATTGATGTTTTTGTAGTTTGTTAAAGTTATTTAGATAAATTTTGGTAGACAGTTTATAAATATATATTTTACATTTTAATCCAGATTAATTTTAGTCTATTTCCCTACAGCTTAAAACCCAGCAATTAAGTAATCTAACAGTCTGATATGTCTTTTTGATCTCATATTTAGTTCCATCAATCATGGCAATTACAGGTGAAGTTCTTTTAATAAACTCAAAGTCCAAGCCATCTTTTCCACAATATTTTGCAACTTCTAAACAAATATCCTCATCTGTTTTAGGTTCAACATCCAAATCAATTAAAAAGCCTTTTTTAAACATAAATTCTAATCCCCCTTAATAAAGTTAATT # Questionable array : NO Score: 5.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:-0.55, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTAAATACATACCATGTTAATGTTCAAC # Alternate repeat : TTTAAATACATTCTATGTTAATGTTCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [4-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //