Array 1 19020-20439 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRSQ01000003.1 Bordetella pseudohinzii strain CWR-1 contig00003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 19020 36 100.0 30 .................................... ATGTTTATCGTGATCACGATTTTGTCGTGG 19086 36 100.0 29 .................................... GCGGTGGTTCTGCGCCGATTAACATTAAT 19151 36 100.0 30 .................................... AGTGATCTTCTTCGTAACATAACGCGCTAC 19217 36 100.0 30 .................................... ACTAGCGTTGTAGTTATGTTGCGTGATTGC 19283 36 100.0 30 .................................... CGCATCGACGGACCGCAGATCAGATCATCG 19349 36 100.0 30 .................................... AAGTCGAAGTACAGCATGTTGAGGGACTAG 19415 36 100.0 29 .................................... GTATGCCGTATTCGATGCGCCCCCAGCAG 19480 36 100.0 30 .................................... TCTTTCACGTCCTTTCCTTGAGAGAGTCCA 19546 36 100.0 30 .................................... GGTCGTCACGCCTTCCCGACCGCCGCTGTC 19612 36 100.0 30 .................................... AGTGGCGTTTCAGCTGTCATTCCCGTACCT 19678 36 100.0 30 .................................... ATCAGTCGCATGAAGCTGCCGCCGTACTGA 19744 36 100.0 30 .................................... GGGTGAGGGCGTAGAGGGGAATGTTCATGG 19810 36 100.0 30 .................................... ACGTGTTACGACGCGATTTCGCTTCCAATA 19876 36 100.0 30 .................................... TGGAACAAGAAGTGATCGCACCGCCGGAAG 19942 36 100.0 30 .................................... TATTTGGATTGGTGCAAGTTCTATCTGGAA 20008 36 100.0 30 .................................... TTGCCCGTCATGGACGTGACGGCGCCGTCG 20074 36 100.0 30 .................................... ATCCATCCGAATTCACTACGGGCCAAGCTG 20140 36 100.0 30 .................................... ATAGCGATGCAGGGACGGCGCGCGTTGACT 20206 36 97.2 30 ......................A............. GGCCGCTCCAGTACCACTCGTGACGAAACT 20272 36 100.0 30 .................................... TCAGATGCACTGCTACATCCGCCAGTCCGA 20338 36 100.0 30 .................................... CCTACGCGGGTTCGACTCCCGCAGCCCGCT 20404 36 91.7 0 ..............................T.A..A | ========== ====== ====== ====== ==================================== ============================== ================== 22 36 99.5 30 ATTCTAGATCACTGGGAATTGCGCTCTAGCCGGAAC # Left flank : CGTTGGCCCAGGTCTACCTGGGAGAACGAAAAGACCTCGAACTGCCTCTGCCCGGCCTGCCAATTTCTCTGGCCAATAGCCTGAACGGCGACTGATTTTCGACATGCTTTCGGGATATCGACTAATGTGGATGCTGGTGATGTTCGACCTGCCCGTCCTTGAAAAAGCCGAACGCAAAGCCGCCTCGGCTTTTCGCAATACCCTGCTGGATCTAGGGTTCGAGATGAGCCAGTTCAGTGTTTACCTGCGGTTCTGCACCAGCCAGGCCCAGCTTGACACTTTGTGCAAATCGGTCGAACAATGCCTTCCGGAAGGCGGCAAGGTCCACGTACTCCAATTCACGGATAAACAGTACGAGCGCACGATCACCTATCAAGGAAAATCGCGCCAACCCTCGAAAAAAGCCCCGGATCAGTTCGATCTTTTCTGACAATGAGCACTCTTTTTTTACTCAGAGAATTGAATAACCCCCTGATAAATCAGGGGGTTATGGGAACAAC # Right flank : AAAATTGGCAGACTACCCCACACGGCAGAACGTGAACCTCTTAACGCTCCATTAATCCAAGTCCTGGATCCTTGATTGTCATTGTGAGCGCAGGCGGAGTGGATGGGGTTGGATTACCGGTGTTTGTCAGTGTTTCCGGGCGTGTGTCCGTCCTGGGCGGCAAGCCATGCATAGCGTCGGCCCATTTTCCGTCCAGGTGATCGCCGTGGCGCTTGCCGCCGTCCTGGCCTGGCTGGCCGCGCGGCTGCTGTGGCGCAAGGACGGCACGGGCAAGCGCGCCGCCGCCGTGCTGCTCGACGCCCTGCTCATCGGCCTGCTGGCCGCCCGTGCGCTCTATGTGCTGCGCTGGTGGCCGGATTACAGCGCCGCGCCGCGGGCCATCGTGTCCGTCGGCGATGGCGGTTTTTATTGGTGGGCCGGTCTGCCGGCCGGCCTGGCTTATCTGGCCTGGCGCACGCGCGGGCTGCCGCCGCTGCGGCAAGCCGCGCTGGGCAGCGCGG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCTAGATCACTGGGAATTGCGCTCTAGCCGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA //