Array 1 481-32 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALOH01000057.1 Acinetobacter baumannii BZICU-2 scaffold11_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 480 29 96.6 31 ............................G TGCCGCAAATCCCTTACTTCAAGATGTAAAT 420 29 96.6 31 ............................T TACCCACTCTATTCAATAATGTATCTACCTT 360 29 96.6 31 ............................T GTCAAAGTGTCTAGACTACGCCTTGAGACAC 300 29 96.6 31 ............................C TCAGCATCTACTGAGTAGAAGCTTGATTCGA 240 29 100.0 31 ............................. AGTTAATCAGTGTCGTTATGTGCGTGCACGG 180 29 100.0 31 ............................. AATTGCATGATCATCATGTCTATGAACCCAA 120 29 96.6 31 ............................C TGACTATTGAGCTTTTCAAAGTCCTGTTGGT 60 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= =============================== ================== 8 29 97.5 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : ATTGTGGTGAGATCGGCCCAACTAGCGTGGTT # Right flank : GTAAAATCCACATTATTAAAGAAAGTCTCTAA # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [40.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 301-32 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALOH01000058.1 Acinetobacter baumannii BZICU-2 scaffold11_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 300 29 100.0 31 ............................. TCTTCACTAAGCTTCTCAGCCATCGATTCAA 240 29 96.6 31 ............................C AACTGTCAGGCGGAGTCGTATAGCCAATTTC 180 29 96.6 31 ............................C GCAAAAAAATTGCGGGCGAATTATTCACTAC 120 29 96.6 31 ............................G CTAAAAGATACTTAAAATCTGTTTGCCATGT 60 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =============================== ================== 5 29 98.0 31 GTTCTTCATCGCATAGATGATTTAGAAAT # Left flank : ATTGTGGTGAGATCGGCCCAACTAGCGTGGTT # Right flank : TAGCCAATTTGCCTTTACCTGAAGCGGGTTGC # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [26.7-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 11523-10476 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALOH01000056.1 Acinetobacter baumannii BZICU-2 scaffold11_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 11522 29 96.6 31 ............................T TAAACCATTTGAACGTGAATTATTAAAGTTC 11462 29 93.1 31 ......T.....................T TTGGTGGCAATATGATTTTTCGACACGGCGT 11402 29 100.0 31 ............................. GCAAGGTCACAACCGTTACATTGCTTGCAAT 11342 29 100.0 31 ............................. ATTACAATAGTTTTCATTCTTGCACTCCATG 11282 29 86.2 31 ....G.......CC..............T GTTCCTGATAAACATGTGATTGCTTTTAAGA 11222 29 82.8 31 ....G....T..CC..............T ATTTGAATTAATTAAGTTTCAACGTTCTAAC 11162 29 86.2 31 ...GC......TG................ ACTATTACGACAACATCAACCAGCAGCAAGA 11102 29 89.7 31 ...GC.......................G CACATAAGCATCAAATTTATCACTTCATTGT 11042 29 86.2 31 ...GC....T..................T TATGTGGGGTTTGGGGCGAAGCTCCATATCT 10982 29 86.2 31 ...GC......TG................ GCTATCCAAAGCGTTCAATGATCATCTTCGG 10922 27 79.3 31 ...AC.......G......--.......T ACAGATGCAGACCGACTAGGGTTCAGGAAGG 10864 29 82.8 31 ...GC.......CC........C...... TATCGAGAGCTTTGTCGATGTAGACCTGCGC 10804 29 93.1 31 ...GC........................ CCATTGGACTTGATCCGCTCCTGTGCCGAAT 10744 29 86.2 31 ...GC.......G...............T TGCATGTGCAACGGCGCGTACGCTGCTAAAA 10684 29 86.2 31 ...GC.......CC............... CATGGGAGCTTCCATTTAGATGCGTTATCAA 10624 29 82.8 31 T..A........TC..............T GTTTTGCGCGTAGTGCGATTTGTTTTGCATT 10564 29 86.2 31 ...GC........C..............T CGCCCCATTCCATCCAAACGCGATTTAAGTA 10504 29 86.2 0 ....G...................AT..T | ========== ====== ====== ====== ============================= =============================== ================== 18 29 88.3 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : TACACCTGTTTCGGGTTTAGCTCGATGTGGC # Right flank : TTAAATTTTAAAAAGAAAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGTCGATTGAACTCAGAGCCTAATTCAATGATTTTAAATATTAATTTATATAATAGATAAATTTTGTACCCATTTTTACCCAAATTAGTTTTAGTGCATTGAATACTAAAACTAATTTTGTTCAAATCCACGTCAAGGATTTGAACTTGGGTACTGATTCTAACACTTATAAACTCAATTTTAAATGAAACGTTATAACATTTCATAAATTACATTAATGCTCATTTTTTCAATTTATATTTCTGTTTTGGACTCTTCGGTTTATCAGGAAGTGTACGTTCAATTAAACCAGCCTCTAATGCAGGATTTAAATAATTTTTTTGGAATGTTGCACGGTGTGATAAATCTAATAAGGACATGAGTTCACTCAAGCTGTATTCCTTCTGTTCCATCTTTTCAATGAGACGCTTAACTTGATCGCTAGCTTGTAC # Questionable array : NO Score: 4.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.41, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.18, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 3723-32 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALOH01000059.1 Acinetobacter baumannii BZICU-2 scaffold11_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3722 29 100.0 31 ............................. TGTCGCATCAAGAACGAAGCCGAGAATGATT 3662 29 96.6 31 ............................C AACATCAGATGGTTGGTAGTGCCACCGAGTC 3602 29 96.6 31 ............................G AGTACAGGCAAGCCACCACCAGCAACTAGTG 3542 29 96.6 31 ............................A TAAATTTTAGATTGCTGAAAGTGCAAATCAA 3482 29 100.0 31 ............................. TTCACAAATTTGAAAGCCTCATTGCCGAAAT 3422 29 96.6 31 ............................C AAAACGTGCGTAAACTTTCGAGCCTTTATAC 3362 29 96.6 31 ............................A TTAAAGATATACGTTAAGGTTCCACCATCTT 3302 29 100.0 31 ............................. TATGTGGGGCTTGGGGTGAAACCCCATATCT 3242 29 96.6 31 ............................A ATAAATTCGTTTTGCTTTGGTGATACTTCAC 3182 29 96.6 31 ............................A CCAGTTACACCACATTTTTGGATTCTCAACG 3122 29 96.6 31 ............................C CAATAAATAGGATTGTCGGCTTGCGATTAAC 3062 29 96.6 31 ............................A TCTGATATTTACCAGTAGAAATAACTAAAGG 3002 29 96.6 31 ............................A CCTCCAGCTATTCCGCCTGAGAGTAGTACTA 2942 29 96.6 32 ............................A TTTTGAGCAGCAATTGGCTCCAAAGCCGATTT 2881 29 96.6 31 ............................C AACTGAAGATAAAGGTATCATTACTGGATTG 2821 29 100.0 31 ............................. TATGTTGAGATTAAGGCTTCTCCATTAAAGT 2761 29 96.6 31 ............................A AGTAGTAATACCATGGCATCACTTGGACAGT 2701 29 96.6 31 ............................G TGATGGGTCAGACCTATACCATTGAATTACC 2641 29 96.6 31 ............................C AAAGCACCACAGCCTGAGGATCAAAAGATTC 2581 29 100.0 31 ............................. GAATTGTTAGGGGCTGCTATGTTAGGTGAGG 2521 29 93.1 31 T...........................A CTAAACACAGGCTTAGACGTAATCTCATAAC 2461 29 96.6 31 ............................G CACTATCGACATACGTTATTTCAACACCGTC 2401 29 100.0 31 ............................. TAGCTTGTTCTTTGGAATAGTTATATAAAGA 2341 29 96.6 31 ............................A ATACCCGGATGCCCCAATTCACCTCATTATG 2281 29 96.6 31 ............................A TTACTCGAAAGCAGGCTTTTGAGTATTTGAA 2221 29 96.6 31 ............................A AAGCCAGTTTTCAGGCTTCATTTGCTTCAAA 2161 29 96.6 31 ............................G TTAGAACCGTGTGAACCTCGTTTCCCTGTAA 2101 29 100.0 31 ............................. TCAACAACAAAGTCGATAACTAAAAACTTAG 2041 29 100.0 31 ............................. TGATGTTTTGGAAGCTTCGATGGCTCAGGTG 1981 29 100.0 31 ............................. TCCGCTGTAGTTGGCGGGTTGAAGGTCATTA 1921 29 96.6 31 ............................A CAAGTCAACAGACCAAGCATAAGTAAACTTG 1861 29 100.0 31 ............................. GTTTTAACCCAAGATGATGTGAAAGCCATAA 1801 29 100.0 31 ............................. GCTGTAAATGAAATCAATGCAAAAACCAATT 1741 29 100.0 31 ............................. ATTTATGAATTTCTATACCGCGATGGTGTTG 1681 29 96.6 31 ............................G ATACGCAACTGCAAGATGCCGATCTCCCGTA 1621 29 96.6 31 ............................A TTAGCAAATCCCCATTGAACGAAAATTATCA 1561 29 96.6 31 ............................A TCTTCCCACTGTGCACCTTTTACCGTTACAA 1501 29 100.0 31 ............................. GTTTGATCAGACGCAAATATTGCTGCCCCAT 1441 29 96.6 31 ............................A TTAAATGATGAGTTTAAAAGGCGTTCCATTC 1381 29 100.0 31 ............................. CTGGCACCGCCTGAGCTTTGGCTTTTTCTAG 1321 29 100.0 31 ............................. AATTGGTATGTGTCGAATAGGAAATGGCACT 1261 29 96.6 31 ............................A ACTGGTGGTTGTGCTGCTTCGATTCGATAAG 1201 29 100.0 32 ............................. CTTTGATTTTTTCAAGCTCTAAACGTGCTTTA 1140 29 96.6 31 ............................A AAGCCACCAATACAGCTTTAGGCGCTTTACC 1080 29 96.6 31 ............................A ATTCGCGGACTGCAAGTAGAACACTTGATTC 1020 29 100.0 31 ............................. GTAACTGCTAAAACCAGAACAGTAACTAAAA 960 29 96.6 31 ............................G ACATGGCGAGTTGCAGCAGGAATACCATAAT 900 29 96.6 31 ............................A CTGGTCTAGGCGCTCTATTTGTGGCTGCTAT 840 29 100.0 31 ............................. GAACGTCAGATCTTTGCTGACATCGAGGGTC 780 29 100.0 31 ............................. TGGAAAAGCCACACTCACACAATTGGGAAAT 720 29 96.6 31 ............................C GAATCAGATTCTTTTAACTCGACACGATAGT 660 29 96.6 31 ............................A TACGCGCTTTTTCACCAGTTGCCCTTGTGAT 600 29 100.0 31 ............................. GTTTTAGTTATACCAATTTCGATTTGAGTTT 540 29 100.0 31 ............................. AGACCAGAATTTATTGTTTCATAGCATTCTT 480 29 100.0 31 ............................. AAAAAGTAATCCAGTTGACATTATTTCCGTA 420 29 100.0 31 ............................. TTATAACCATTGAAAGATCCATAAATGATTC 360 29 100.0 31 ............................. CTGGGCAATAAATAGAACCATCTGCTAAACG 300 29 100.0 31 ............................. CGCTAAACAATAGCATCACCAATATTAACGG 240 29 100.0 31 ............................. AGCAATGCTGAGGGCTTCCAAGATGGCTACT 180 29 100.0 31 ............................. TGAAGCAACTTAGCGGGTGATGCTTTGATTT 120 29 96.6 31 ............................A TGATGTATATAGGATCGTACCCACTTGTAAC 60 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 62 29 98.0 31 GTTCTTCATCGCATAGATGATTTAGAAAT # Left flank : ACGTTGGGCTAAAACGTTATACAAACAACTTGCTAAAGGCTTTGGCCTTGAGTTTACGCGTGATGAAGGTAAAAACTCTCACGATACTATTGCGGATATAGCCAACAGCTACCTCGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTGGCTTTAAATGGTATGGGAATTAGCTTTGCCCTCCCTATTCTGCATGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTCGCCGATCTGGTTAAAGATGCTTTTGTGATGCCAATCGCTTTTACATGTGCAGTAAAAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACATTTAACCCAAATACCTTATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : AGAAGCTCCGTATAAGAGTCACACGGCGTTGT # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.60, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //