Array 1 259455-260215 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHJ01000001.1 Streptomyces sp. NRRL F-5555 contig1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 259455 29 100.0 32 ............................. TGCGCTGCCGCTGCCATCCGTCCAGGCGCCAT 259516 29 100.0 32 ............................. ACCGCGACCAGGGCGAGCAGGATCGCGGCGAA 259577 29 100.0 32 ............................. GTGGTCAACAGCATCAACATGTTCGGGATCAT 259638 29 100.0 32 ............................. GAGGGCGCCACCTCGGTGCGCGTCGACCGTGC 259699 29 100.0 32 ............................. TCAGAGCGGCGGCGAACTTCCCCATATGCTGT 259760 29 100.0 32 ............................. GACGTCGCCGGGCGATCCGGCGATCCAGCCGG 259821 29 100.0 32 ............................. GAAGGAGCACGGGCCGAGTCCCGCACCATCCG 259882 29 100.0 32 ............................. ACCCAGCCGTCGGCCTCGGCCAAGGCGGTGGC 259943 29 100.0 32 ............................. TACGAGCCGTACGAGTGGGAGCGGCTGCTGAA 260004 29 96.6 32 ...............A............. TTCAGGATCTCGCCCTGGCTTCCGGCGTTGCC 260065 29 100.0 32 ............................. CAGATCACGAGCGAGCAAGCCGACCCGTTCTG 260126 29 100.0 32 ............................. TACTCGAAGACGGCGACCGTCAACCTGAAGGG 260187 29 96.6 0 .................T........... | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.5 32 CTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : CTGGGCTCGGTGGTGGGGGCCTTGGCCTATCGGCGAGTGTTGCGGTCTCGGCCCGGCGTGTCGCACACGACGCGCCCGTGCCGGTCGGCAGGGGGCGCGGTGGCTGATCGTTCGTGGGTTGGTGGAGGTGTGGGGGAGGGGGGTAGAGGCGGGACTCGGGAACCGAGGCGGGGAGCGTCGCAGGTATGCCTGCCCTCCCAGCGAAGATCGCTGCCGAGTACAGCGTCGCTGGCGTCCGGGTGGTGCGTCCCGGGCTCGGAGCCATACTCGTCACGGGGGGCTGGCTCCAGGACTTCGGTGCGTTGTCCTGTCTGGCTTACCGGTGGCCGGTCGAAGTACGGGAGTCGTTCGGCCGCCGCCGCTTCTCTCGTGCGAGCAGATCGAGGTGGCGGTTGGCCTCCACACGTGGAAGCCGCAGTTGGCGTGTGTACTATTTGCCGGAATCTGTGAAAGTCGCCGAAACCGGGTCTCAGCGGCTGTAAAGATGCAGGTCAAAGAGT # Right flank : CTGCGCCGGGCAGAAGACCGAGGCCGATCGTGGCTGCTCCCCTCCCACCCGCGATCATGCCTGCGGCCGCGGCCTGTTTGCTATGGGCGCAGTTCGGCCGAGCTGGAGCACCGCAAGGAAGTGCCCCCAATCGAGGGGCTTCCACCGACGGCACGTGCCTGAGCCTCTCCTGGAAGCAAGATCAAAAATAGAGTAAGGACAAGATGCCGAGGAGTCCGTGCGCGGCCAGGCGCTGGAACGCTTCGACACCGGTACGGCGCAGCTCACCCCCGACCAGGCCGCCACCGCCATCGACGTCTTCCAGGTCGCCGCCGGGTTCGAGCTGTCCGCCGAGCAGCAGGCCGCGGTGACCCGGGTGCTCACCGCCGGGCACGGCATCGATGCCCTGGTCGGCGTCGCCGGGGCGGGCAAGTCCACGCTGATGGAGGCGTGCAGGATCGGCTGGGACGCGACCGGCACGACGCACGCCGGCGCGACCCTCGCCGCGGTCGCCGCCCAGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 263801-263038 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHJ01000001.1 Streptomyces sp. NRRL F-5555 contig1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 263800 29 100.0 32 ............................. GCCGTCGTGCTCCATCTCCACCAGGTCGCCGT 263739 29 100.0 32 ............................. TCCAGCACTACAGCCAGCGCACCGCCCGCCGT 263678 29 100.0 32 ............................. GATCGCACCGAACGCGGTGAGGAAAGCGACGG 263617 29 100.0 32 ............................. GGCTGACCGCAGGAGGGGACATGGCCGACGAG 263556 29 100.0 32 ............................. GCGCTCGCCGACGCGCGGCACAACCTGGTGCG 263495 29 100.0 32 ............................. TCACCCATGTCGGCCCCCTCATGACTGGTCGT 263434 29 100.0 32 ............................. GACTTCTGCGGGTTCTCGGACGTGGAGGATGA 263373 29 100.0 32 ............................. TGGATCATCGACGCACCCGGCGCGGTCCTGGC 263312 29 100.0 32 ............................. GTCGTCACGCGCTCTGGCGCTCGGTGGGTGGG 263251 29 100.0 32 ............................. CTGCTGCGCGCCCTCGACGAGCTGCCGGACGA 263190 29 100.0 32 ............................. GGCGGAGGGGCGAGCCGTGGAAGTCGCCGTCC 263129 29 100.0 33 ............................. GCCCTCGGTTCGGTGGGTGCCTGGGTACAGGGC 263067 29 86.2 0 ............T....T....G..C... | C [263042] ========== ====== ====== ====== ============================= ================================= ================== 13 29 98.9 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : CGGCACCAACTACGACGGCCCCGAGGACTACGGGGACGAGCTCTGGTGACCGTCATCGTCCTCACCAACTGCCCGGCCGGCCTACGCGGCTTCCTCACACGCTGGCTGCTGGAGATCTCCGCCGGAGTATTCGTCGGCAATCCCTCCACCCGCATCCGCGACGCCCTCTGGGAAGAAGTCCAGCAGTACGCGGGCCAGGGCCGCGCCCTGCTGGCCCACACCACGAACAACGAGCAGGGCTTCACCTTCCGCACCCACGACCACGCCTGGCACCCGACCGACCACGAAGGGATCACCCTGATCCACCGCCCCGACCCCAACGCCCCCACCGCCGAACCAGCTCCCCGGAACGGACCACCGTCCGGCTGGAGCAGAGCCTCCAAGCGCCGACGCTTTGGCAGAGGCTGATGCACTTCGAACACTTTATGCCCTATTTGCCGGATTCAATGAAGATGCTCGAAAACCGCCTCCGGCGTCAGTAAAAGCGCAGGTCATCCAGT # Right flank : AGGTTGGGCCCGCTCCGTGGGTCTCCGGCCAATACCACCAGCGACTACCGGCACCAACGCGGGACCCAGTCAGCGCCCTGGAGCTACTTCATGCTCTGCCCCCGGGGTTGCGTCGACTGCGGGTGTGCGACAGCAGCCTGCTGGGGCTGCACGATCCGCTTCGCCTGTTCCTGCTGGACGGTGCGGCGTCCCGTCGTCTCCCGGGCGTGCAGGTCGGGGAACTTTTCGGCGATCGCAGCGCGCAGGGCCTTCTCGGCTCGGGCTTTGGCGGCCTGGGCGCGGTGGCTGGCGGCGAGCTTCCGGAACTCTCCGGCCTGGCGGGTCGCGCGGCTGACGTCGTCGCGGTCGCGTTTGTCCATGCCGTGCCCGTGCCGGGAGGCGGCGGAGCGCATCTCCAGGAACCGCTCGGCGGCCTTGTCCGCGCGGTCGGGCACCGGCTGGCCTGCTGCACCGAGGGCTTGGGCGATCCGGTGGTCCCGGACGGTCTCCCATGCCCCTTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 274047-274807 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHJ01000001.1 Streptomyces sp. NRRL F-5555 contig1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 274047 29 100.0 32 ............................. GACACCGGAAGACCACGAGGTGCGCGCGCTCG 274108 29 100.0 32 ............................. AGCTTCGACTGCTCGGGCCTGGTGGAGTACGT 274169 29 100.0 32 ............................. CCGGTAGGCCGGTACCGGTTCCGCGGCGAGGG 274230 29 100.0 32 ............................. GACTGGACCGGCCGCCTCTACGAGGGCGACGA 274291 29 100.0 32 ............................. CCCGTCACCCCCCGTTGGTCAAAAATCGAACC 274352 29 100.0 32 ............................. AATCAGAGCGGTGATCACGATGATGGCGAGCA 274413 29 100.0 32 ............................. ATCCGCCAGGTCATGCGCTCGTCGATGCCCGA 274474 29 100.0 32 ............................. GACCTCCCCGACCGCACGTTCCCCCAGGTCAA 274535 29 100.0 32 ............................. CACCCGCCGTCACCGTCGCGTCTCCTCGTCGT 274596 29 100.0 32 ............................. GACGTGGCCGCCGCGTCCGAGATTTTCGTCAA 274657 29 96.6 32 ......................C...... CAGCTCCGCGAGGCGTACGAGGACATCGTGCT 274718 29 96.6 32 ...........................T. ACCTTCACGCAGCCCTACGGCTCGACGGAGCT 274779 29 86.2 0 ............TG.........A....T | ========== ====== ====== ====== ============================= ================================ ================== 13 29 98.4 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : GACACGCGAACGCCGGCGTGGCCTTGCCGATGTCGTGCACACCAGCGAGCCACACGGCAAGAGCACGCGCGTCCGACTCCCCTTGGGGCAACGCCCCGGCGATCAGCCGCCGCACCCCTACAGGCAACCACCGGTCCCACAACAGCCCCGCCACTGCGGCACTGTCTTCCATGTGCCGCCACAGCGGCAGCCACCCATCTGTCTCACGGTCATGCTTGGCCCAAACCGACCTGGCCGGCTCCCCAAGCCGACGCAGCAGGCAGGAACGGGCGTTCCCCCCATCACTCATGAGTGATTCATACAGGGAAAACCCGGCTCCCCCCCACCAGAACCAGAAAAGAGACGAATCCGCTGAGAGATCGCACTTCTCAGGCATACGATGATCGGCTATCTATGGACGCCTCTACGGAACCACCCATCACCTCATGCCCTATTTGCCGGAATCTGTAAAGGTTGCCGAAACCACGCCTCTGCGGCCATAAACTTGCAGGTCAATCAGT # Right flank : TCTCGTCCCCGGCCACGGTCATGCCCGTGGCCGGGACCGTCTTCCCGGGTTCCGCCCAGTCGAGCCGGAGGACCGCAAAGAAGTGTCTCCATTTGTCGTCTGCCATGAGAACGTCAGCCGCTCTGCCACCTGAAGTGTCAGTCGTACGGTGCGCCGCCTGCGGGGTTCTACGCCCCTGCTCATGACCGGACGTATCTGCCGGGGCGGGCGTGAGGGGCAGACTCACACCGCCACTCCCGAGCTCCGCTTGTACAGCTGGTCATTCGTCTGGGTGGTGATTGGCCCCCGAGCGGCTTTCGTTGCGCTGAATGGGGGACGCGCCCTCTAGCGTGCAGGCGTGACGACTTCGATCAAGCCACCTCGTGAGGCAGAGCAGCCGTTCATGTGCCCGGACGTGAGCGGGATACGCGTGGTGGTCACGGGGGCCACGGGGTTCGTGGGCCGTCGATTGTGCCGCCGGATTGTTGCGGGCGGTGGCCGGGTGACGGCGCTGGTGCGGC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1971-2734 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHJ01000067.1 Streptomyces sp. NRRL F-5555 contig67.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================ ================== 1971 33 90.9 28 ..............................GTT TCGAGGTCCATCCACTCCATGGCATCGC 2032 33 87.9 28 A.......G....................T..T TGGCGCCGGCCGTGTTGACGCGGGTGAC 2093 33 87.9 28 ........G....................T.CT TCGCCAACGGAGAGACCTACAACTACGT 2154 33 93.9 28 .............................T.C. AGCGCTTTTCGGCGGGCGTGAGGGGCTC 2215 33 90.9 28 .............................A.AT CGGACAGGCTCAGCTCCACCTGACTCGA 2276 33 97.0 28 ................................A GCACGTCGCCGAGTACTCCGCCGCCGTC 2337 33 93.9 28 .............................AT.. TCCAGAAGATGCGCGCCAGGCAGCGGCA 2398 33 100.0 28 ................................. GGGCGCCGCGCGGCGCCGACGACGAGCA 2459 33 87.9 27 .............................ATCA AGGGGGACACCGCGGTCCGGCTGCTGC 2519 33 100.0 28 ................................. CGCCGACGACGTCCGTCCAGGTGTCGGC 2580 33 93.9 28 ...............................AA CGAGGCCAAGTTCCCGTACTCCTGGCGG 2641 33 87.9 28 ...T.........................TG.G GCGACGACCACGACGACACCGACGTCCG 2702 33 93.9 0 .............................AA.. | ========== ====== ====== ====== ================================= ============================ ================== 13 33 92.8 28 GTCCTCCCCGCCGACGCGGGGGTGTTCCGCCGC # Left flank : TCCCGCGCATCGTCCGCGACGTCCAGAGCCTTCTGACGCCGAGCTCCATGGATGCCACCGATGAAGACGAGCCACAGGAGAAGCGAGATGTCCAACTGGTCCACCTCTGGGACCCCAGGGCCGGTGCCCTTCCCGCCGGCGTCAACTATGCGGCCGGAGGTGAATGATGCCGTCCATGCTCGTGATCGCCACCATGGCCGTTCCTGACCACCTTCGCGGAGCACTCAGCCGCTGGACCAGCGAGGTCGTTCCCGGCATCTTCGTCGGGAGCGTCTCCGCCCGCGTCCGCGATCAACTCTGGCAATCCGTCACCGAGACAGTGGGCAACGGTGCCGCAGTCCTCGTCCACCCGCCCCCACCGAACAGGGCTACGCCATCCGAACGGCCGGCACCCGCCGCCGCGTCCCCGCCGACTTTGACGGGCTTACCCTGATCCGTATGACCGCCGCACCAAAGGTAAAGGAAATGTAAAGCCCTTCTTAAGGTGAAGGTCAGCAAGG # Right flank : CCGGCCCCGGCCTCGCTCCTCACGTGGGAGTCCTCCCCTGACGGCGGCCTTCGTAAGCGGTACTGATCCACTTCTTGTGTGGCGGTGACACAGAGTCACAGGTCGCTGCAGGGACGGCTGTTCGTGTGGTTGCAGCGTTTTCTCGACGTTCTCGAAGGCGTTCTCCCATCTGTCCTCCGTGGTGGTGGACGAGGTCAGGGGGAGTGTCCAATAGACGGCGGATCGATGATCAAGGAGACGCCTGAAATGAGCGAGACCATCACCGACCACGAGGTCGTGGAGGAGTCAGCCGTTGAGTCGGCTGCGGAGGCGGTGCAGACGAGCAGTTGATCTCGATGCTGGTCGACCGTGCCCGTTCCGACGGGCTGCAGCTGACCGGGGAGGGAGGGCTGCTGCAGCAGCTGGCCAAGCGGGTGCTGGAGTCCGCCCTGGAGGGCGAGATCACCGATCACGTCGACTATGACAAGCACGACGTGGCGGGCCGGAACAGTGGGAACTCC # Questionable array : NO Score: 5.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.00, 8:1, 9:0.26, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGCCGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,1.15 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 2064-228 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHJ01000057.1 Streptomyces sp. NRRL F-5555 contig57.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================================== ================== 2063 28 92.9 33 .C.C........................ GCATGCATGTTGATCTTCTACTTTCGCAAGTGA 2002 28 85.7 33 ...C....T.....T.........C... GACCAACGGGTTCCTGGCGGACCTCTGGATTGA 1941 28 96.4 33 ...C........................ GACCGCGCGGTGGGCCGCCCTGGTGATGCGCTT 1880 28 92.9 33 ...C....T................... GGTGCTGTGGCTGCCGACCGTCGCGACGCTGAC 1819 27 89.3 33 ...C....A............-...... GCAGGTCGACAAGTACGTGAAGGGGACCGGCCG 1759 28 92.9 34 ...C................A....... GCGGGGCCTGACCGACATCGCCGGCGTGTGGAAG 1697 27 92.9 74 ....-...................C... GAAGGTTTGGCGCCTCAACGTCGTCGAAACGACGTTGTTCCGTTGGACGCCTGTGGCGTACAACCATCAGCCCC 1596 28 92.9 33 ...A......................T. GGCGCACGATGAGCTGCTCGCCAGTGGACTGGC 1535 27 85.7 33 A...............T.....-.C... GTCGGCATGTGCCGAACGCGAGATCTGGAACAG 1475 28 100.0 33 ............................ GTTCGCGTCCGGCGGCATCATGCCTGGGTACAC 1414 28 100.0 33 ............................ GTCGTGGGAGGCAGCGTGAACGAAGCGACGCGC T [1391] 1352 28 92.9 34 ...C....................C... CGCAGGGAGCCATTGCCGCGCATGGGATTCTGGA 1290 28 96.4 33 ..........................T. GCATGCGCAGTACGTCGAGCAGCAGATGGGCAG 1229 27 89.3 33 ........-..........A....C... GTTGTGAGTCTCGTCGACGAGGAGGTAGGCGAT 1169 28 82.1 33 ...G..TG.......T......C..... GTGGCCCGCCTCCGACAGGGTACGGACACGAGC 1108 28 75.0 32 ...C..G..T......GA..A......A TTCCTGGTGGACACCAGCGACCCGGACAACGA C [1081] 1047 28 92.9 33 ...C....T................... GTTCGACGAGCCGACCGCCAGCACTGTGACGCT 986 27 92.9 33 .C...................-...... GCCGCGGCTCGGCCGACCGGTGGCCTTGTCGAT 926 28 96.4 33 ...............A............ GATCTACCGCAACGAGGCGCTGATCCGCGCCGA 865 28 96.4 33 ....C....................... GACCCCCGGATCGGGCAGACCGAGGACCTTGCG 804 28 100.0 33 ............................ GGCGCAGCCCGCATCCGTCGAGATGCTCGCATG 743 28 92.9 33 .......T..........A......... GGAGGGCCGCCAGGGCCCGACGACTGCGGCGCA 682 28 96.4 33 ...C........................ GCCGCCACGGGGTACGAGGTGGGCGGGCGCGCC 621 28 92.9 33 T..C........................ GCCTCAACAAACTTTGGCCGATCGCGTGTTCGG 560 28 96.4 33 ........................G... CATCAACGCCACTCGGACGCAGTTACAGGACAC 499 28 85.7 33 .C.G....T.T................. GCGGTCCGTGTCCGGCTGGTAGGACACCTGCCT 438 28 92.9 33 ...C....................C... GAAGGGCGGCCTGTACTGGGCCGCGATCCACCC 377 28 96.4 33 ..............T............. GTAGGCGGGCATCACGTGGATGGTGTCGTCGCC 316 28 100.0 33 ............................ GGCTCGCACGGATGTCGGGCGGGCCTTTCGTCA 255 28 96.4 0 ...C........................ | ========== ====== ====== ====== ============================ ========================================================================== ================== 30 28 92.9 34 GTCTTCCCCGCCGACGCGGGGGTGTTCC # Left flank : ATCTTGTTGAGGGCCGACGGAGGGGTAAATGCCTCAAGTACCGCCCCGCCAACGGGTTCCCGCCGTAGAGTACTTACCGCTGCACGCCTCCCTGGGAGGTGCGCGGAACCTCATTGACTCACCGAAGCGACGGCAACGCCGAGCAGAACGCACGACCCTCTCGAGGGATGTGGCGCAACCTCGGCCCAGTCTGCGCTCTGGAGATGAAATGTCCCGGTTCCTGCACAAGTTCGCCCTGCGCCGCGAGGTACTCCTCGAGACCTCACGCGTAGTGATCACCGCGGTAATCCGCGCCCTGATCAGCGAACTCGTCAGCTGGCTCATCTGAGCCAACGGTGACGGACCCCAAAGGGGTCCGTCACCCCTCATTCGCAGACAAACCCACTGGTTGAACACGTCTCCGCGTCACAGGGATACACCACAGGGTGAGAAACCCAGCTACCAGCGGATACCGCCGACACCGCGAACAGAGAAGCCCCCGCCACCGCAAGACCCGCCCG # Right flank : CACGGTCACCACCTGCGGGACGCTGCCGCAGCCGGCAGACGCGGGCCTCCAGCGCCGACGGATCTGCGGTCCGTCGATGCCTTCTCCATATCGCGCCTTCCTCGGCCGTTGATCGTATTGACGCCGAACAGGACCGACGACGTCTACCGGCACCGTTTCAGTGCGGCCCACGAGCTGGGCCATCTTGTCCTGCACGGCGACGCCAGCCCGGGTGACATCGCCCAGGAG # Questionable array : NO Score: 5.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:-0.08, 8:1, 9:0.18, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCCGACGCGGGGGTGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCGCCGACGCGGGGGTGTTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [16-23] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [21.7-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,4.5 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], //