Array 1 38085-39942 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPOD01000006.1 Salmonella enterica strain CFSAN064281 CFSAN064281_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 38085 29 100.0 32 ............................. AACTTAACTCCAGCATTCTGGCAATTGTTGCG 38146 29 100.0 32 ............................. GCGACATCAAAATCTATTTTTCATTCTATCTG 38207 29 100.0 32 ............................. CTCCAGCCACATTGCGGCGCGACCGCTTTTAA 38268 29 100.0 32 ............................. CAATGTTTCATGCTACGCAAGAGACCAGAACG 38329 29 100.0 32 ............................. TGGTGGAGTGCCGAACCGCTACCGTTTCAAAG 38390 29 100.0 32 ............................. TCATGGCGTCATTCGGTACTGATATGCCAATG 38451 29 100.0 32 ............................. TCGTTTGTAGCCGAAAACCGGCTGGCGCTGAT 38512 29 100.0 32 ............................. TAATGAATCGCCTTTCTAAAATGAAAGACGAC 38573 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 38634 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 38695 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 38756 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 38817 29 100.0 32 ............................. AATGGGATGTTCTCGATAATGGCGACGACGAA 38878 29 100.0 32 ............................. CGGTCATTTTAAAGAATCCCGTTAAACAACAC 38939 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 39000 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGTTGTTTAGTTCCT 39061 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 39122 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 39183 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 39244 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 39305 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 39366 29 100.0 32 ............................. CCAGCTTACACTATTTACGACGTTATTGAGCA 39427 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 39488 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 39549 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 39610 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 39671 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 39732 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 39793 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 39854 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 39915 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTGATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 56624-58302 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPOD01000006.1 Salmonella enterica strain CFSAN064281 CFSAN064281_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 56624 29 100.0 32 ............................. CGACGCTTCCATCGTCTGGCATTCCTGTTCGT 56685 29 100.0 32 ............................. CCCGCGTATTAACAACGACGAGCAGGGCGTGC 56746 29 100.0 32 ............................. GTTGCGCAGCCATTGAGCTGCAAACGGATCAA 56807 29 100.0 32 ............................. CGCCCCCCGCATACAGCGAGAGACGGGCCATG 56868 29 100.0 32 ............................. CGCCGGGCGCGGGAGTCCCGGGCGATCCTCCC 56929 29 100.0 32 ............................. GCCCGAAATCAACTTGCAACATTTCAGTTGGC 56990 29 100.0 32 ............................. ATAGTTCATCTCTGTTCTCCAGCGGTTTCTAT 57051 29 100.0 32 ............................. ACGGCATTATCACGGCTATTTCTCTGGAAATG 57112 29 100.0 32 ............................. GACAGGACTTACGACCGGCTGGACTACGCATC 57173 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 57234 29 100.0 32 ............................. GCTGAGATAATTGCCGATCATCTTGAAGACAT 57295 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 57356 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 57417 29 96.6 32 A............................ CCCATCAAGATAAACATCATAGCGAGCACCTG 57478 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 57539 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 57600 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 57662 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 57724 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 57785 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 57846 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 57907 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 57968 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 58029 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 58090 29 100.0 32 ............................. CGTGGCTGGAGCAATGTACAGATTAAAGGGGT 58151 29 100.0 32 ............................. AAGCCATTGACGCAACGGAAAACGCCAATGCT 58212 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 58273 29 100.0 0 ............................. | A [58300] ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //