Array 1 98689-96210 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQQK01000006.1 Bifidobacterium dentium strain ATCC 15424 NODE_4_length_214485_cov_367.688580, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================================================================================= ================== 98688 36 100.0 35 .................................... TCCAAACGGGATGTGGACTCGACCTTCGCGAAACA 98617 36 100.0 36 .................................... CAGGGAAAAAGAGAGCCAACCCGTTTTCGAAGAGCG 98545 36 100.0 35 .................................... AAGGACGATACGCCATTCGACCTGCGGGACGGATA 98474 36 100.0 38 .................................... ACTGCGCAGGCTACATCTGCCTGGAATTAGCCGACTAC 98400 36 100.0 35 .................................... CGCTTACAATGATTCGCAGACCGCGCTCACACAGT 98329 36 100.0 35 .................................... TCGCCGCCGTGGAGCTGCTGAAGGAGCAAGGGCCC 98258 36 100.0 36 .................................... GCTACGAAGAGCAGTGTCGAGCAGACGGCTTCGGAG 98186 36 100.0 36 .................................... CCGCACATTGCGCCTTAAGCGCCGGAAGCAGGACAG 98114 36 100.0 34 .................................... GACATCACCGGTGTCACGGCTGCTCCCAGCTTAC 98044 36 100.0 35 .................................... CAACTATTACGGCCTTGGACTCATGCAGGCCTTGA 97973 36 100.0 35 .................................... GTGGGTTTGCGGCGGTCTGTTTTGAAGAATGTTCC 97902 36 100.0 38 .................................... TCGCTGGCCAGGGAGTCGATGAACGACGCGATGGACGG 97828 36 100.0 39 .................................... GATGAACAACGCTGTAAGTCACGTCAGAATCAGCGACAT 97753 36 100.0 38 .................................... TCCTCAACGAGATGGTGATTCACCGTCGTAAGAACACC 97679 36 100.0 35 .................................... ATGAAGAGGGGTGTGGCGTCAGTCGGTATGACACA 97608 36 100.0 36 .................................... CAGACCAAGGCCAATGCCGACGCCACGTATGCGACT 97536 36 100.0 35 .................................... TTGAAGTACTGGTAGCGCTCGCATTGCGTTGCGAG 97465 36 100.0 38 .................................... ACAGACTAATCTCAAGGCCACTAGCGATAGTCTGACCG 97391 36 100.0 35 .................................... ACGGACGTGTCGAAGATGTCGAACCCTCCGGTCAG 97320 36 100.0 35 .................................... TCGAACATCGAACAGTCCTGGATCGAGTTCGCCGA 97249 36 100.0 34 .................................... ATGTGGCTGGGAAGTAAAGGCCTGAAGATCCTTA 97179 36 100.0 36 .................................... AAGGAAATCGCAGAAGAAACCGGCACCGGCATCGAA 97107 36 100.0 35 .................................... TGCTGATGACAGTAGGTAAGATTCACCCGCATTCC 97036 36 100.0 34 .................................... AGCGGCAGCACCACCAACAAGAGCAGCGCCGAAC 96966 36 100.0 36 .................................... CGCGACGTCGTCGAATGGGGCAGCGCGGCGCAGCGT 96894 36 100.0 38 .................................... CTGGCGCAGACCGGCAAGGACGCCGAGAAACATTTCAA 96820 36 100.0 35 .................................... AAGGACTAGGCATGAAGGACGTGCTTGACCCTCAG 96749 36 100.0 39 .................................... TGATCGGCACATGCCCACACTGCGCACGCCAGTTGCAAG 96674 36 100.0 35 .................................... GTGAAATATGTGTGGCGACATTACGTCACCCGCGA 96603 36 100.0 37 .................................... ACGCCGGAACAGTTCATGAAAGACAATGGCATCTCTC 96530 36 100.0 38 .................................... CGGCCCGTCTTCAATGACACCGTGCGGACAGGGATCTA 96456 36 94.4 35 ........................A..........C AAACTGCATACCAGCTGCATATGAAGTGCGTATAG 96385 36 80.6 103 ....T..GA..A.....T.....CT........... ACGTATTTCCTGTTCATGGGCACCCTGAACTAGATGTTTCTGAACGGCAATGCTCAGGTTTTCTGGGACCGACCGGCGTGCAGATTGCGTGCGTCGTGGTCAA 96246 36 83.3 0 ...........T.GT........CT.........A. | C [96244] ========== ====== ====== ====== ==================================== ======================================================================================================= ================== 34 36 98.8 38 ATTCCTGAGCAGTAATGCTCAGGACTTCATTGAGGA # Left flank : CGCTTATGATATCAACGATGATCGCCGGCGTAGTCATGTGGCAAAAATACTGCAACGCTGCGGTGAACGATTGCAATACAGTGTGTTTTTGCTAAGAGTGCGTCCATCAAAGATGCTTCAGATTCAGAATCTGCTTGAGTGTGAAATTGATGGATCCTGTGATTCCGTGGTTGTTTGTTTCCTTGGGAAAGAGGAACAAGCGAAAGATGGGATGAACTTTCTTGGCAGGCGTGGGTATAACGATTTGGATATTCCTACTGTCATTTAGCGGTTTTATCACATATGGAAATGTTGTTTGAAAACTAAAGAGTGTGTCATGCTGATTCTTGATATGCGAGAGCTGAATCGGTGGAAATGTAAAGTGGTAGCGCTCGCACCATATAGGATAACGACTCATATGTGTTTGCATCGTAAATGATGGTTGTTCAAGTGTGTGACTACAGCGAGTTCTCGCAAACCTCTTGATTGAGCTAATCGATAGGCTGAGTTAGAATGAGGCC # Right flank : CGAGGCCACAGTTGATGAGGATGCTTCACATTCGGATTCAGTGGGCTCGTCATGCTGTGCTAGCACTGGATGCATCCCATAAATTGGAGTGCCTCATCCAGTTGAGCGGTTAAATCTCCGTCCAGCTCAGCAAAGAGACAAACCTCGATAAAGGCTGCAGGGCGATTAACGCGGCGTACTCTTCGTGGAGTGCATCAATGCGGCAGACAGGCATTTTCATGCCTCGAGGTTGTTCATTTAACCAATTCAGCCAGAATTACACAAACGCAGAGCTCACCCATGCCTCGTCTTGAAACACTCTTCGTCACCATTAATACCTAGAAAAGGAAATGGTCGGGATATGGAACCCGATCCAGACAAATACCATTCCTCAACGAATAGGCTCATACGTGGCGTGGCGTAACCGCATCCTGCGGGCTGCGCTACACTGGGGTGCGGCTCGTCATCTCGATGAGAGGACGAGCACGGTGATGGCGAGTATGAGCATAGTCGCATGCGTC # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.16, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCCTGAGCAGTAATGCTCAGGACTTCATTGAGGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.00,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 68083-67794 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQQK01000011.1 Bifidobacterium dentium strain ATCC 15424 NODE_3_length_383661_cov_410.508118, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================= ================== 68082 24 100.0 29 ........................ GTTCAAACCCTTCCCAGCGTCCCAATCCA 68029 24 83.3 29 ........T....AG....C.... ATTCAAACCCTATTCAGCGTCCCAAAACC 67976 24 100.0 29 ........................ ACCTAAACGCACCTCAAAGGGATAAAACC 67923 24 83.3 29 .............AG...T.C... GCTGAAACCCCATTCAGCATCCCAATCCA 67870 24 100.0 29 ........................ TATTGAAGCTCTTCTGGAGTCCTGATTCG 67817 24 83.3 0 C............AG....C.... | ========== ====== ====== ====== ======================== ============================= ================== 6 24 91.6 29 TCCAGCCACTGGAGAAATCATCCC # Left flank : CCGCGGACACCCAGGAGGACTGGCAGTCCGAGGCCGCGGAAAGCACGGAAGAGACCACCGACAACGACGCTGTTGCCGAGTCCGCCGAAGATGACGACGATCTTGACATCCCGATGGACCGCGTCGAAGCGGTGCTGAACGCCACCGTCGACAAGGACTCACTGACTCCTCAGATGCAGCGCATGATGAATCGTCAGGCTGAGAACACCCGCCGTGTCGAAGAGACCATCAAGGGCACCAAGTCCAACCCGCGTTGGTTCGTGCCACTGTTCTGCGCACTGATGATCATCGGTCTGATCTGGGCCGTGACCTACTACCTGAGCGGTAGTTATCCGATTCCGAACATCGGCGCATGGAATCTGGCCATCGCCGTTGCCATTATCATGGTCGGATTCCTTATGACCATGTGGTGGCGCTGATCATATCCGCCACGAGAGGGCGTCTGGGCGAGTCCAGACGCCCTTTTGTTATGTCCGGTCACCCTTAGCCGTCCCAAAACC # Right flank : ACTACGCGATCACACCTTAACGGTACGTAGCAGAATATGCCCACCGCCTTGGATGGTGGTGCCGAACAAGTAGGTATCGCCTCCATCGGCAAGCTTGAGCTTCTTACGCAACTGCGGCGCTGTGAGCGGAAAATTGCGTACGGCGACATTCGCCCTCCCGACCCCGCTCAGCAACCTCCTCACATCCTTCTTGCCCATGCCTCCAACCGCTTCGATGGCAAACCCGCGCCCTGGAAAATCCGTCACGGGCTCAGCGGCCACAAACAGGTGACTATTCGGTCCAATCTGCGTCACACCATACCGTTCCTCCAGCAGGTCGAAACAGCCGGCTTTCATAATCGATGCATTCGGCTCATACAGATATTCCATCTCCGGCAACGGCGCCGTGCCGATGTGCAACCCACGCGCATACACCGCAGAATCGTAATCAATCCGCTGACCGTCGTTCACGCAATACACATGTGGCGCACGTACGTCATCCGTCGGATGCCTCGTTTCCA # Questionable array : NO Score: 2.85 # Score Detail : 1:0, 2:0, 3:0, 4:0.59, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCAGCCACTGGAGAAATCATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //