Array 1 101059-105170 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIPE01000004.1 Vibrio cholerae strain A12JL5W90 4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 101059 28 100.0 32 ............................ ATTCGATAATACGACGTCGGGTAAGCGCTTGC 101119 28 100.0 32 ............................ GTTATAGTAGTGGTACCAGTTACCGCGTGAAT 101179 28 100.0 32 ............................ TTACCGCCACGGTAGGGAATAATACAAAAACA 101239 28 100.0 32 ............................ GTACCGGGCGTTACGTACAGCATTACACTGCT 101299 28 100.0 32 ............................ GACCGTCGGGTCGAGCGCCAAGCCCACTACCG 101359 28 100.0 32 ............................ GATATCGCCGCGCCCAACTGGTGGGAGTACGT 101419 28 100.0 32 ............................ AAACACATTCAACGCACTCGCAATCAATTACC 101479 28 100.0 32 ............................ TCCCCGTCGGTCTGGTCTGTCCATGCCGTGGT 101539 28 100.0 32 ............................ ATTTCGAACCGGTGACTATGATTTGCAGACGC 101599 28 100.0 32 ............................ GTTCCGGGCTGTGCCTCATTGATGATGACCGT 101659 28 100.0 32 ............................ AAGCTCACCAATGGTTAACGCCTGAACTGGAA 101719 28 100.0 32 ............................ GATAAAGTTCAGTGCGGTTACAATGCCTTCAC 101779 28 100.0 32 ............................ ATTCCCAAATCCCCAAATTAACCGATAAGGAT 101839 28 100.0 32 ............................ CATTTCAACGAGCCATATTTTTTGGCACTCAT 101899 28 100.0 32 ............................ AACACTGCCGCACCAAAGGACACACAAAATGA 101959 28 100.0 32 ............................ AGTCCAGGATGGCTCAAGCTCTGGCTCAATAT 102019 28 100.0 32 ............................ AGTTGTTCATAACCGGGCATTGCCATATCTTC 102079 28 100.0 32 ............................ ACAAGTTGACCGAATCAACTACTGTGTCGATC 102139 28 100.0 32 ............................ TTCAATGTTGGCCGTCAGGTTTCCGGTTGCTA 102199 28 100.0 32 ............................ TTGCGGACAAATCGATTCATTCTAAAGTAATC 102259 28 100.0 32 ............................ AATACAACGTTCCACGCGCATCCGCAGTAAAT 102319 28 100.0 32 ............................ TTATATTAACAATTTCGTCAGTGCCCGTTTTT 102379 28 100.0 32 ............................ TATTAATTAGCATGTGAAGCTCATAGATAGCA 102439 28 100.0 32 ............................ TTAATCATGCTTCATCTGAGCAAGTTAAAAAT 102499 28 100.0 32 ............................ TTAACGTTGCATGGTGATTGATACAGCGTCGA 102559 28 100.0 33 ............................ CGTTCAAAAATGGTGATTTAGTTAATGAATCTG 102620 28 100.0 32 ............................ ACCATCGCCAGTTCTTCTGGCTGCGTGATGGG 102680 28 100.0 32 ............................ GTGCTGAAAGATGGCTCAGAAGTTTGGCTGGC 102740 28 100.0 32 ............................ AATACGGGATCGGCGTGTAGGTTCTTGCGCGA 102800 28 100.0 32 ............................ AAGGACGTCAGCAAGGACATGCTTTCTATCTC 102860 28 100.0 32 ............................ ACCAAGTTTAGTCTTTTCTTCTTCAGGACAGC 102920 28 100.0 32 ............................ ATCGTGCGAGTGGGACGAGTTTCAAGGGTTAG 102980 28 100.0 32 ............................ AAAATAGAGTTCTTTCCTTTTGTGCCACCTCA 103040 28 100.0 32 ............................ GTTGGAGTAGTGGTACCAGTTACCGCGTGAAT 103100 28 100.0 32 ............................ GCATCAACAAGCGAAAGCAACTCGTTTAACGT 103160 28 100.0 32 ............................ ATATGCAGCGCGCTTTTACTGACTGCCTTTCT 103220 28 100.0 32 ............................ CAGCACAGCTTGAGAGCGTCGGAGTGAATAAG 103280 28 100.0 32 ............................ TCGACACGCCCCGATGCTGGTAAGTACGCTGA 103340 28 100.0 32 ............................ GTCAAGCGTAAAACGCTTTAACGCGACTTGGG 103400 28 100.0 32 ............................ TGTGGAAATCGTTTGTAAGGTACACGGACCGT 103460 28 100.0 32 ............................ ATCAAACGTACCTGCTCGCATTGCGTTTAGCT 103520 28 100.0 32 ............................ TCGCTCACAGTTTTAAAACAAAGTTTCGCCGC 103580 28 100.0 32 ............................ TTCCATCCTAAATCCCCACCACTCATCACCGT 103640 28 100.0 32 ............................ TCCCAGTGGGCCCCTCCAGAGCGCAAGCGCCT 103700 28 100.0 33 ............................ CACCGATTTGCAAGAGGCTGATGAGATGGTACA 103761 28 100.0 32 ............................ AGTCACTGCCATCAATGTTTTGCTTCATGATT 103821 28 100.0 32 ............................ ACAATTCGGAAATGGCGCGCAAGAACAAACAA 103881 28 100.0 32 ............................ GATCCGCTGGCAAAAGGCTTTACTCGCTCCCA 103941 28 100.0 33 ............................ TCAATCTCTCGACGATTCATTAGGCCTTTCCAC 104002 28 100.0 32 ............................ GATGCGCAGCAAGTTGAGCGAGCAATTGATGA 104062 28 100.0 32 ............................ TCACCGAGATTGATTGAAGCGCGTACCGTCTG 104122 28 100.0 32 ............................ TCTGGCGCGCTGAGTGCGACGTGCAACTTTGA 104182 28 100.0 32 ............................ AATGGGTGGTCAGTGTCAAAGAAGTTTTGACC 104242 28 100.0 32 ............................ ATGACGCTTTGATGCCGTTCTTCAATGTCCGT 104302 28 100.0 32 ............................ CAATATCGAGCGAGGGTGCATCCTTGGGCGCG 104362 28 100.0 32 ............................ CACCTTCTCAATTGACTGACAAATCAATGAAA 104422 28 100.0 32 ............................ TTGGATGTCCAAAAAGTTTGGTGTATCGTTTT 104482 28 100.0 32 ............................ TGCATGCTTTTTGTGGGCGGCATGGATTCAGA 104542 28 100.0 32 ............................ TTTACTGCAAAAGAAATAGGGCAGTTTTTATT 104602 28 96.4 32 ...........T................ GAGAGCGCAGCGAGAGCAATCGACAATGCGAT 104662 28 96.4 32 ...........T................ ATAAAACGTGTCACCAAACTCATTCATCTGCT 104722 28 96.4 32 ...........T................ TACCACGGTTCAACGTCTTGCGGCTGCATGGT 104782 28 96.4 32 ...........T................ TCTCTCGCCCCCATTTTTGCCGCATCCGCATA 104842 28 96.4 32 ...........T................ TCATTGTGATACTGCTTACGTAGCTCCTCCTC 104902 28 96.4 32 ...........T................ TGAGCAAGTGACGTCGGTTAAGCCTGTTATTT 104962 28 96.4 33 ...........T................ AAACTGAACCGTGACGAAATCCGTTGTTTTGGT 105023 28 96.4 32 ...........T................ AACACTAGGATAGTTATGAGCAGCATCTTGCT 105083 28 96.4 32 ...........T................ TCTTCAAACTTCCCGAAGTGAAAGACGTTAAA 105143 28 96.4 0 ...........T................ | ========== ====== ====== ====== ============================ ================================= ================== 69 28 99.5 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTAACTTACGTAAGCTTTGTACGCAAGCTGGTGAAATCACCCGAGCGAATAGAGCGCGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCCGGTAAACCGCTGGTGGAATGTTTAGCAGCTTTGCAACAAAGCAAGCCGACAGCGTTGTGTACCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGCTCACCAGAAAAAAACAGCAAATTCCCGCTGTTTATTGAGATGCAGCCACAAAGCACATCACAAGATGGGAGCTTTGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCGACCGTACCGCATTTTTAAATTGAACGAAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTGGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : AAGAAATAAATATCCGACGGAAAAACAAAATCTCGATGGCCGCTTATCGGTTTCATTACTTCCAATAGCGCCAGCATCTGCTCAGTGAGAGGGATGCGGTGTTCTCTTCTTTTTTTCATTCTCTCTGTGGGAATAGCCCCAACTTTCTCATCCCAATCAATGTCGTCCAACGCGCACTAGATGGCCTAGGCATACTGGTGTGTTACCACTTATTTAGGCTTTCAGTAAGTGCAAATATCCAGCACCAGCCACACTGTAACTTCCATAACTAGATTTTTCGATATGCTCACTCCACCAGCTCATAAGCTTTCGACGAGAGTCTAAATAGTCGGTGCGGTTGTATGCTTTGCGTATTTGGTTTTTGTCAGTATGAGCCAATGCGGCTTCAATGACATCAGGTTCAAAGCCCTGTTCATTAAGAGTGGTACTTGCCAAAGCACGAAGACCGTGCGCGGTCGTTCTATCCTTAAATCCCATTCTGCTAAGTGCTTTATTAGCGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //