Array 1 15308-16399 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVKZ01000039.1 Neisseria meningitidis strain 338.rep2_NMEN 332_26433_559919_169_,...,137+, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 15308 36 100.0 30 .................................... GGACGGAGTGCATTTAAACAGCTAATCGAT 15374 36 100.0 30 .................................... GATACCGGCTGCTTCATTACTACGGCCTGC 15440 36 100.0 30 .................................... AGCAGAGGCGGTCGATATTTTGGCGGTTGA 15506 36 100.0 30 .................................... CAACCAGTCCGCCCATGTATGCTCTTTATC 15572 36 100.0 30 .................................... AATGAGCGCGATCAGAAAAGCGGCCAAAGG 15638 36 100.0 30 .................................... TCCAATACCTGTTTAAATGCCGATGAGAAA 15704 36 100.0 30 .................................... CTTATACACGAGCGCCGTCTTATATTGCAT 15770 36 100.0 30 .................................... ATCAGGCTTTATGACAAGCAATCAGTTAAA 15836 36 100.0 30 .................................... GGTAACACTAGCAGGCGTTATAACCTGTAA 15902 36 100.0 30 .................................... ATCTTCCCGTGCAGGCGGACTTCCTTACGC 15968 36 100.0 30 .................................... TTTTAATGTAGCCATAGTGCATCACTTTCT 16034 36 100.0 30 .................................... TCAGCCAATCGCCTACCGTTGAGACTTTGA 16100 36 100.0 30 .................................... AAAAAGGCTTGCATGTGGCATTGCTGAGTG 16166 36 100.0 30 .................................... CCAAAGATACGGATTAACACAACAAGCAAC 16232 36 100.0 30 .................................... TAGTTGACTACGATGTCCACCATATCATCA 16298 36 100.0 30 .................................... CCATTAAAGCGTCGCAGGCAATGAATGACA 16364 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 100.0 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : AAGGATAATGACATGCGTCATCGTAATGGCAACCGCAAATTAAACCGTACTAGCAGCCACCGCGCTGCGATGCTGCGCAATATGGCGAATTCCTTGTTGACTCACGAAACCATCGTGACAACTTTGCCGAAAGCAAAAGAATTGCGCCGCGTAGTTGAACCCTTGATTACTTTGGGTAAAAAATCATCTTTGGCAAACCGTCGTTTGGCTTTTAACCGCACTCGCGATCGTGATGTTGTAGTTAAATTGTTTGACGAATTGGGTCCACGCTTTGCTGCTCGTAACGGCGGCTATGTTCGTGTACTGAAATACGGTTTCCGTAAAGGTGACAATGCTCCTTTGGCATTGGTTGAATTGGTTGATAAAGTAGCTGATTCTGCTGAATAAGCAAATTGATATGAAAGCACTACCTGTTTAGGTAGTGCTTTTTTCATTTAGGAAGTCTCTATTTTATTTTGCAACGCTACAATTTTATTGTTTCATTCAATGGGGTGAATATA # Right flank : TACTCCAACGGGAAATCCTTATTCTATAAGGGTTTCCCGTTTTATTTTGTCTAAAAAATGGGCTTAAAATAATAATAGTTGATCTGAATTGACCCTTTTTTCTTGGGTTTTTAGCTCTCCCAACAGCAGTTTCATGGTGGCAAATTGCTTTTCTGTTACTTCCAAACAGCGGATTGAGCCTTCTTGCGGTAGGTTTGCACATAGCCTATTGTGGTGTTTTTGCAACGAATCTCGACCTTTAACAATACGGCTATATACGGAAAGTTGGAGCATTTGGTATCCATCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTGGCCGCCGTGGTAACCGGTAGGTCAAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGCAAGATTTCAGGCAATTTCAGCTGTTTGGTGTTTTTGGCGGTTATGCTGGCTTGAAATGAAGAAATCATTTTGTCGATAGCGGCTAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 1 9733-13662 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVKZ01000042.1 Neisseria meningitidis strain 338.rep2_NMEN 335_13662_205751_210+,302_, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 9733 33 93.9 33 CT............................... AGATCACTTAGCTTGTTCACATCTTTTTTGATG 9799 33 97.0 33 .G............................... TTTGGATACGACCTTGCATTTTTTATCCTTGGC 9865 33 93.9 34 GT............................... ATTACCGAGTAACACCACACCGCTCATTGTCAGT 9932 33 97.0 33 G................................ ATTGCAGATAGTAGTGCATTTGCCTTTTTAGCG 9998 33 93.9 32 TT............................... TATAATCGGTGCCGGGGCAGTCTGTTCAACTT 10063 33 93.9 33 GT............................... TTTGAAATCAACATATAGCAAAAAATATAGCAA 10129 33 100.0 33 ................................. ATAGGGCGCATGGTATGCCCACGCCGTTTACGG 10195 33 93.9 33 CG............................... CGATGTGATTCAGGCCGTCTGGCAAGTCATCAC 10261 33 97.0 33 .G............................... TCAACCGCTCAAAAAGTGATGTGGGATTTGCCC 10327 33 97.0 33 .C............................... GACGATTTGAAAGCCAGCAATATCCAAGATTTG 10393 33 97.0 33 C................................ TGTTACGTCTGATAAGTTATCTGTGCAAAACCT 10459 33 97.0 32 .T............................... ACACCAACATCGGGGATACGGTCATTTGTGTT 10524 33 97.0 32 .T............................... GCTTACCCAAAGCCAGTTGCGCGTAGTGTGCA 10589 33 97.0 32 .C............................... ACTTCACCTACCATCAACTCAATCCGTGCAGC 10654 33 93.9 33 GG............................... TCTTGACTTATACGACAAGCTAGGTTATAATGC 10720 33 97.0 33 G................................ ATCGTTCCAGCTTCGTCCTACATCGCAATCATT 10786 33 97.0 32 G................................ TTCACGAAACTCAAACCCTCACGCTCCAACTT 10851 33 93.9 31 GT............................... CTCTACCGATACCGCAACAAAAGGAAAAGGA 10915 33 100.0 32 ................................. TCGAAGTCCTCATCATCGCCGAACACATGGTA 10980 33 100.0 32 ................................. AGCGCAAACACAAAGGCCGTCCAGAAGCTGGA 11045 33 97.0 32 .T............................... AACCTCTTTGTCGATAGCCATTGGGAGGGCAG 11110 33 93.9 35 TC............................... ACTGACCGCCAAGCGCAAAGAGGCGAAGCTGCAAA 11178 33 97.0 32 .G............................... TTTATATGGCGAGTTATGCGTTACTGATTTCA 11243 33 93.9 33 TG............................... CAACTTTTTTTCGAAAAAATTTTTTCATCTCTC 11309 33 97.0 32 G................................ AGGGATGTTGATTGAACAGAAGCCCGTGGAAA 11374 33 93.9 32 TC............................... AATTTCATAGCCGCCGTATGTGAAATAGTCGG 11439 33 93.9 34 TT............................... TTTAAATGCAAATTTCGCGCGTTTTGCCTGTTTT 11506 33 100.0 33 ................................. AGCTTGGCGAACGCGGAAATTAATGCGCTCGAA 11572 33 93.9 32 GC............................... AGAATTGACAGCCTGAATAGCTCATACAACTT 11637 33 97.0 34 .T............................... ATTTTGACCATCTCGAGAGATGGAAAAAATTTTT 11704 33 93.9 32 TG............................... GCCCGCCCTCTTTCCGCGCCGAAAAAATAAAA 11769 33 93.9 33 CG............................... AGTAAATCCATCCAACTACTGGAAAAACTGGAC 11835 33 97.0 34 G................................ AGACGGCCTTTTTTATTGGGGGTATGGCAGGGGC 11902 33 93.9 34 GG............................... GCCTTGCTCTTCGGCGCGCTCGCCTGCGGCTTTG 11969 33 97.0 32 .G............................... ATGTATGGCAAAGTTGGAAAGACATCAGCGCA 12034 33 93.9 33 CC............................... ATCGTCGAGGAATATGGCGCGGCGGTTTTGATT 12100 33 97.0 34 G................................ CTCTCAAGCGAACCGGCTTTGCTTCCAATGTTGA 12167 33 100.0 33 ................................. TAAAGGGAAAAGTTAAGTGCTTGATTTTAAAGG 12233 33 100.0 31 ................................. CTTTGCTATAAGCCTATTCTTCACGCTTGGC 12297 33 93.9 32 GG............................... CACAATATAGCCTTTCAAGTCTTTGAGGCCGG 12362 33 97.0 33 .G............................... ATCTCAAAAATTTTTTTCTCGACACCTCCGAGA 12428 33 100.0 34 ................................. GTGCATGATCGTCCGCGTATGGTCTTGCACCTGA 12495 33 100.0 33 ................................. GAGGAAGCGGCAGAGAAAGCCGAATACATCAGA 12561 33 97.0 34 .C............................... GACCACAGGGAATACCTTGTCGGCAAGTTTGATA 12628 33 97.0 38 T................................ GAGCTTCCAGCGAGCGCGAAGTTTCTCTGGACAGCGGC 12699 33 93.9 34 GC............................... GAGCTGGTCGTTGACGTAGGCGACGGCGTTGACG 12766 33 93.9 32 GC............................... GGCGTCAACGTGGACGCGGCGCAGCTCTCGAT 12831 33 100.0 34 ................................. GGAATCATGGCGGCTTTGGCGATAATTTTGTCTT 12898 33 93.9 34 GG............................... CTTATGTCGGCCCGATTCTTGCCGTTGCAGCAAT 12965 33 93.9 33 GG............................... TTTAAAAATTAGTTTGCCAAGATTAAAATATTA 13031 33 93.9 33 TT............................... CGCTATGCTCACACGCACGCAGAACTTCCGCAC 13097 33 93.9 34 GG............................... TGAACGTATCGACACGGCACACGCTGATTCGTGG 13164 33 93.9 33 CG............................... GCTACATCAAATAAGCAAAGCCCAGCAACATTC 13230 33 100.0 35 ................................. ATGGCGAACGGCGAGGCCGTCTGTAACTTTTCCGT 13298 33 97.0 35 .G............................... CTGTACTTCTTTTTTACGATTGTCGCGCCATTGGG 13366 33 97.0 33 C................................ TATTCAGCCATCTGACAGGGAGCGGAACGTTTT 13432 33 97.0 33 T................................ ACTCCTAAGATTTTGGATTCATGCGCCGCCCAG 13498 33 93.9 34 TC............................... TGCATCGCTCTTGTCTGCGAAGTCGGGGTATCGG 13565 33 93.9 32 GC............................... TTTTAATTGTGGGGAAACCCGTACATTTTCAT 13630 33 93.9 0 TC............................... | ========== ====== ====== ====== ================================= ====================================== ================== 60 33 96.1 33 AACAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : CTGTATATGGGAATACAAAATGCTAATGCTGATTACTTACGATATTTCGTTGGAAGACGCGGACGGACAGGCAAGGCTACGGCGCGTGGCGAAATTGTGTTTGGACTACGGCGTGCGCGTGCAATATTCGGTGTTCGAATGCGACATCGCGCCCGATCAGTGGGTTGTTTTAAAAGACAAACTCTTAAAAACCTACAACCCCGAAACCGACAGCCTGCGCTTTTATCATCTGGGCAGCAAATGGCGGCGCAAAGTGGAACACCACGGCGCGAAACCGGCGGTGGATGTGTTTAAGGATACGTTGATTGTGTAAATCGCCAACCTGCGGTTCTCATGAAAATGCGGCAGGGTTGGCGAATTGGGATTGTTCTTTAACAATCAGGATATTGCGAATGCGGGCGTAACGGAAAAGGCTGTGTTATACTCGCGTTCACGCTTTTCTTAGGAGCTTAGCGAAATCGGGGCTGCGAAACCTGATGGAGCAAGGCTTTTAAGAGAGG # Right flank : | # Questionable array : NO Score: 5.26 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.20, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AACAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.40,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 12-830 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVKZ01000019.1 Neisseria meningitidis strain 338.rep2_NMEN 236_843_11441, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 12 33 97.0 32 T................................ GTTGCAGTGTGGGCAAGCCCAGTACCATCTAC 77 33 93.9 33 GT............................... AGAAGCAAGAAGACCATTTCGAGGTATTGACAG 143 33 93.9 32 CT............................... CAGTGAGGTTGACGAATATATCAGCAAACTGG 208 33 97.0 32 C................................ CGCCCATAAGAGATACGCGCACAATAAAACCA 273 33 100.0 31 ................................. ATCGGCCATTTGTGGAACGCGAAGAAAATCG 337 33 93.9 34 .G..........T.................... CCCGCTACTGCCGCCGCTGCAACCGCCGATACAA 404 33 97.0 32 T................................ CCTCTCAATACGCCAATTTTTGCGACATCAGC 469 33 93.9 31 CT............................... ACAGTCGAGCTTGTCTATTGGAAAGAAAGCG 533 33 93.9 32 TG............................... ACACTGTTTGATTAACCCCAACCAAAGGAGGT 598 33 93.9 32 CG............................... AACTCAAACGCTTGGAACTGGTTAGGCGTGAT 663 33 93.9 34 GA............................... GACCACAGCCGAAAGCTCTTTAAAAATTCGGAAA 730 33 100.0 35 ................................. AAAAGTGGCTGTTTGGCACTGGTACGCGTGTAGTC 798 33 93.9 0 GA............................... | ========== ====== ====== ====== ================================= =================================== ================== 13 33 95.6 33 ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TACATTTTCATT # Right flank : CTGCGCCTGAAGC # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.26, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.40,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [16.7-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 4087-187 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVKZ01000013.1 Neisseria meningitidis strain 338.rep2_NMEN 161_4097_63318, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 4086 33 97.0 31 G................................ TATCATGTACCTGACTAACGACCCTTGGCCT 4022 33 97.0 32 .T............................... TTGTGCCTATTGGCTGGCAATAACTCACTTAA 3957 33 97.0 32 .T............................... ATGTCGATAAAGCCATTTAGGGATTTGGCTTA 3892 33 97.0 31 G................................ ATCGCAACCGCCTGACAAGATGGTCGACATA 3828 33 97.0 33 T................................ TGTTACGGTATCGCCATGTACGGGGTTAATATC 3762 33 97.0 34 .G............................... ATCTATCGCAGGTGGCAAAAAAAGTTTTTAACTA 3695 33 100.0 32 ................................. ATCTCCAGATCATCTTTTTCATGCACAAAACG 3630 33 97.0 31 C................................ TACAAACGCGCGAATCGGGGAACAGGCAATT 3566 33 97.0 32 G................................ CGCGATTTCCTTACGCCAAATCCTGAGCCTGT 3501 33 93.9 33 TG............................... TATCGTTTTGCCGATTTGGGCAGACAATAAGCC 3435 33 93.9 31 GG............................... ATTCGTTTGAACTGTCCGCTTCGTTGTGCAA 3371 33 97.0 33 G................................ AGGGATACTGTTTACCGGCTTGACGGCACTGTT 3305 33 100.0 31 ................................. AGACAGTCTTAGACAGTTACAACTTGTCGGA 3241 33 97.0 32 .G............................... CAACTATTTAATTCAGTCATACGCAATGACTG 3176 33 100.0 31 ................................. AACCGCTTCTGCATTTCCACTTCCAACTCGC 3112 33 97.0 32 T................................ GTTGCACCATTTGCCGACCATCGCCTATGAGG 3047 33 93.9 31 TT............................... TGCACCGCTACCCTGCCCAGTCGGGTCAACC 2983 33 97.0 36 G................................ ACCAGAATTTGCCATGAATAAACAAATCGTCGAATT 2914 33 93.9 33 CT............................... ACTGCCCAAACTTTTTTTTCGAAAAATTTTTTC 2848 33 100.0 33 ................................. TTTAAAATTTAGTTTGTTAGTAAAAATTTTACT 2782 33 93.9 33 TG............................... ATCTCTCACACACTTTATACCAACGCCATTCTC 2716 33 93.9 33 TG............................... AAAACCAAAAAATCGAACACATCGACCAAACCA 2650 33 100.0 33 ................................. CGGCTCAATTACAAAGTCGGATTTGCCGTAAAT 2584 33 93.9 32 CG............................... TTATTTTTTTTGTTTTGGATTTTTTCACCCGC 2519 33 93.9 33 GT............................... ATCAAATAAGCGAAGCCCAATAAATAACGGCGC 2453 33 93.9 34 GT............................... ATCTCTTCGAGTGGCCAAAAAAAGATTTTAACTA 2386 33 100.0 31 ................................. ACGGCGAAGAGCTTGACCTGATGGAATCGGC 2322 33 97.0 31 .G............................... CACTGCCTTGAGTGTCTCGCCGTGAATTTCC 2258 33 93.9 31 GG............................... ATGCCCCGCATGAATCATTGAAATAGCCCTT 2194 33 100.0 33 ................................. TAAATGGAGTTCCCCACGCCACCCATACCAAGT 2128 33 97.0 31 .G............................... AACGAAGACCCTGTGCAAATCATTGACGGCG 2064 33 97.0 32 .G............................... TAAAGGGATACCATTGAATTTTTCAAAATTTT 1999 33 93.9 33 CA............................... ATAGAATTGACGGTTTTAAAAACCATCATCGCT 1933 33 93.9 35 GA............................... CGTAAATCCCCACTCTTGACCCAGTTTTTTAACTC 1865 33 93.9 32 GG............................... CGGGTCAGTTTTGGGGCGGTGCATTTCCGATT 1800 33 93.9 32 TG............................... TGCCACATTCAGGCGTGTAGTGCTGATTGGCG 1735 33 93.9 33 TT............................... GCCGTCAAAAAATAAAATCTGTTGATATTCAGG 1669 33 93.9 34 CG............................... TCACAAGGACAGGGGTTTTTATTTACCGAAACCA 1602 33 90.9 32 TG...........A................... AGCAGTCATCTCAAGGCTTGACCCTGCCTGTT 1537 33 90.9 34 GT...........A................... CAGCTCAGCACGCCCAATCAGCGCGCCTGTTACG 1470 33 90.9 35 GA...........A................... AGCGGAATATCAAGCCAAATCATCTAGCCATTGTG 1402 33 93.9 33 .G...........A................... AGGCCTCCGAAGCAAAAGCTTGGCAGTTAGATA 1336 33 93.9 32 .A...........A................... GTATAAAGGCCGTCTTAAAAATAAAGCCGTTA 1271 33 90.9 32 CT...........A................... CAAAATCGAACACTCAGGAAAATTTAAAACTA 1206 33 93.9 33 C............A................... AGGCGACGGCTGTGCTGGGATAGCACTGTTACC 1140 33 97.0 31 .............A................... TTACAATACTCGCGGTAGGCCGCCCACTGTT 1076 33 90.9 32 GG...........A................... TATACAAACGTCCACTTATTTACGAAATCATT 1011 33 93.9 32 .A...........A................... AAGAGTATCTCAACCTGTCTGAAGAAGAACAG 946 33 93.9 33 G............A................... AGGCGGTCGGCTCTGCGTTGTCATCCAGAAGCC 880 33 93.9 33 .G...........A................... AGGCAGTAAAACGGCCAAAGCAAAAAACTGGAC 814 33 93.9 33 .A...........A................... GGTTCGGGGCGTGTCGGTGTGTAGGCAGGGTGT 748 33 90.9 32 GG...........A................... GGCCATGCATTAGGTCTGATATTTGGTGCATT 683 33 90.9 33 TG...........A................... CTACCGCCAAACGGCGTTTGTCCTCAACCCAAA 617 33 93.9 35 .G...........A................... GGGGCGCAGCTCGCCTTCGATGGTCATCTCTTCGG 549 33 90.9 32 GG...........A................... AAGCCCTGAATGAGTAAACCAGCCCATTGAGG 484 33 97.0 33 G................................ AGGTAATCAGCTATCGATATGCTTTGCAATATA 418 33 84.8 33 TT....T.......T..A............... AGCAACCATTACGAAAGTTAGCATTATGGAACC 352 33 87.9 34 GT...........A...........C....... CAACATATCGGGATCGATACCATATTTGTCGCCG 285 33 93.9 33 ......T.....T.................... CCAACCGGGTATAGCAGCCTGACAACCTGTACC 219 33 93.9 0 .................A....A.......... | ========== ====== ====== ====== ================================= ==================================== ================== 60 33 94.8 33 ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : CCTGTTGAAG # Right flank : CTCTGCCACCGTATCTCATGTTTGAGTAGGGAAGAGGGCTGTATGTTCAAATATCGTCCAAGCAGGCCACTTTTCTTTTGATTCTTCGCTTTCCGAAGCTTTAGTGAAAGCAGTGGAGGATATTAGAAGCAAGTTATAAAGGGTAATCAATAACAATGCCGTCTGAAAAAGTTTCAGACGGCATTTT # Questionable array : NO Score: 5.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.14, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : CAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.00,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //