Array 1 26903-28273 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMTW01000006.1 Nitrosomonas eutropha strain Nm14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 26903 28 100.0 33 ............................ CATCATCAATCGCGCGACCATTTGTTGCGCATC 26964 28 100.0 33 ............................ TACCATCTGATTTCTGAGGATCGGGATGCAACA 27025 28 100.0 33 ............................ TAAAGGGTGGCAGACAATATCGGGAATTGGCTT 27086 28 100.0 33 ............................ TGCTGAGCGCACCATGCAGAATAACATCGGGGC 27147 28 100.0 34 ............................ GCCGCCATAGACAAAAATGGATGGCACGTTCAGT 27209 28 100.0 33 ............................ TCAACATATCACCATCTGGGTAGGCGTCCTTTA 27270 28 100.0 33 ............................ TGACCCTACTTGAGATTGTTCGTGCGGCATGTG 27331 28 100.0 33 ............................ CAATTCCACCAGGGTTGTCTGTAATAACCCTTT 27392 28 100.0 33 ............................ TGTCTATCAGTACTCGCGACGCTTTTGCGCGCA 27453 28 100.0 33 ............................ CCGCGGCCAGTTGCTCAACCGTGTAGATGTGCC 27514 28 100.0 33 ............................ TGAGCATATTTCCATCGGGATAGTGCTGTAACT 27575 28 100.0 33 ............................ TCCTTAAGGCATTTGGGAAGATACACATCGCAG 27636 28 100.0 33 ............................ TATCCATCACGCGCCATTCCGCTTCCGGAGAGT 27697 28 100.0 33 ............................ TCGGTTGGAAGATACCATGCCTTTGTGGAATTC 27758 28 100.0 33 ............................ CGATCTGAGCCAAAAGCCTGGCAGACTCCGTAG 27819 28 100.0 33 ............................ TACATACCCCCCTCTCTTTTCTCTCTTTTCCCT 27880 28 100.0 33 ............................ TATCTCTATTATCTCGCGTAAGAGATTTTTGTA 27941 28 100.0 33 ............................ CTATTACAAGCTGTACTGGGAATCTCTGCAAGC 28002 28 100.0 33 ............................ TGTCGGGACGCTATTTAACTTTGATATTAAGCC 28063 28 100.0 33 ............................ TTGATCTGCCCCGGATATTTGCAAGATTGACTC 28124 28 100.0 33 ............................ TGCTCTTTCATGTCCTGCTTCCACGATTGAGGC 28185 28 100.0 33 ............................ TGCTGGTATGGAAAAAGCAAAACTGGTAGCTGC 28246 28 78.6 0 ...........AGG.......AA....T | ========== ====== ====== ====== ============================ ================================== ================== 23 28 99.1 33 GTCTTCCCCACGCCCGTGGGGGTGTTTC # Left flank : TTGTATAAAGAGGCATTGTGTATTGACTTGGCTTTTTTCATGACTCGTGAACTGGCTGGGCGCTACGATAAGCATCAGGTAGCGGCAAAATTTCGCGAACGGGTAGTTGAAATAGATTTGTTGGCTAAGGTGGGGGACGATGTAACTGTAATATTAGGAGGTGACCGTGCTCGTCGTTCTCGCAAATGATCTGCCACCCGCTGTGCGTGGACGTATGAAACTATGGTTCATTGAACCTCGACCCAATGTTTTTGTATCAGGCATCAAGGATTCAGTAGCGTCCACCGTGGTGGATTATCTTTACAAGCATTGCCCACCAGAATCCGGTTTGCTAATGGTGCGCTCAGTACCACAGCCACCTGGATTTGAAATACGCTGCATCGGCCCACCACGTAAACCAATGATTAATGTTTCCGGATTACAGTTAATTGTTGAAACCCTGAAAATCGGAAAATAACTAAATGTAGTCTGAAAACAGCATTCTTTAACAATATATTGCT # Right flank : TTTTATCCAGAAGTTTTATGAGCTGGTTGCATTAGTACAGAAAATTGAAACTGCAAAAAACAAGCATAACGCCTTTCTGAAAGAACTGGGTTTGCCGTTGTTACCGTGATAGCGGAGTGATTTTTGCAGGTTTTCGTTATTTCCGGATAAGGGGTGATCAGATTTTCAGGCGTTCGACGATTTGCCCATTTTTCAAATGGGATTCGATAATTTCGTCAATATCTTCCTGGTCAACGTAGGTGTACCAGACTTCTTCCGGGTAGACGACGATAACCGGACCCTCGTTGCAGCGATCGAGACAACCCGCATTGTTGATGCGTATTTTCCCTTTGCCGCTTAATTTGAGTTCTTTGATGCGCGCCTTGGCGTAATCGCGCATTGCCTGGGCGTGATAATCATTACAGCAGCCTTCACAGTTGCCACGTTGGTTAACGCAAAAGAAAACGTGATGTTGATAATAGCTCATGCTTTCACCTCAGTTTGATTTCTGTCCAGATTCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCCCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCCCGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2122-1664 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMTW01000037.1 Nitrosomonas eutropha strain Nm14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 2121 36 100.0 33 .................................... GTGAGATTTAATATCTTTTCCATTTCATTCTCC 2052 36 100.0 35 .................................... CCACAAGGCACGCAGTGACTGCTAAAAAGTTTACG 1981 36 100.0 34 .................................... TATTGCAGCTTCTTCTACTGCTGCTTCATACTCC 1911 36 100.0 35 .................................... TTCAGTTTGAATTGAAGGTTAAGCTCAGAACGAAC 1840 36 100.0 34 .................................... GGCAGCATCCATCAAATCTTCTTTTGTCGGGAGT 1770 36 100.0 35 .................................... TTAAATGTGAACGCGGGGTTCCGATGACATGACAA 1699 36 97.2 0 ..................................T. | ========== ====== ====== ====== ==================================== =================================== ================== 7 36 99.6 34 GAAACACCCATGCCCTGATTTCAAAGGGATTGAGAC # Left flank : TTGGTTACATACGCCATATCCTTCGCTGCTTTTTCAGTAATCTGATTAACGCGACAAGTTGGTGCCAGCTCGAACATATAAAAATTACTCCGGTAAGCAGAACGGAGTGCATTGTGTATTAGCTGCTGGCCGACAAGCTGACGGCAAGCTTGCCGGTCAGAGTACGTGTTGCCTTGATCAGAATGGAGATATACGATTTCATTTCGGTCGAAGACCGGTCACGCGAATATGGATGAAAAATGGCAATACTTTTACAAACTGAAAGGACAGAAAAAGCAGTAATATCTGCCTGTTCCCTTGGAAATTGCTGGTTGTTGGTGGCTGAAAACACTGCAGATGACAGATTGTGGCCCAGGGAAAAATAGCCACCAGCTGCCTGGTAAAATGAAGCGTTTTTGAAAGAAATTATTGTTTGGAGGAGACATCTTGCTGCATCCCGCTATTTTTCCTCTTTGCCCCGTGCAGTGGATTGATTATAAAGAGAAAAATGATAGTGGTCA # Right flank : GAGTTGGTATGTAATTTCCCTGCCATCACGAGGGACGCAGTGATGTGGTAATCCAGTGTTGTCGTTACCACTTCGCTGGATTGCTTCACCCCTTGGATGTTCGCAAAGACGGCAAAGTCAGCTCACAAGCAGCGGCTCCTTAATGGCGCACCTTGCTTGTATAGCATGCCTGCACCAGCCTTGTGCGTCCGGCACCCCAGCCACTGATGGCTGCTCCCAGACACAGAGCGGTAAATAACCAGCCGCTGGCGGCATACCCGCCAGTGAGACTGTGCAGCATGCCAATCAGCAAGGGGCCCAGTGCCGCCAGCGTATAACCAACACTCTGCGCCATACTGGATAAGTGTGTTGCGATGTGAGCGTCGGGAGAACGCAGGACGATTATGGTCAGTGCGAGTGCAAACAAGCCACCCTGCCCGATTCCTTGCAAAATGCTGAATTCCCAGACTAATTCAATTGGGCCGAACAACATTCCCAGAAAGCCGATTGCAGCAGTGAGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAACACCCATGCCCTGATTTCAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.40,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 642-1312 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMTW01000031.1 Nitrosomonas eutropha strain Nm14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 642 36 100.0 34 .................................... CAGCCATTTCTAGTGATGTTCCAACACAACATTG 712 36 100.0 35 .................................... TAGACTGTTGAGATGAAAACTCTCCGGTGCCCTTC 783 36 100.0 35 .................................... CTCTGCATATTCTTCGTTAGAACCCCTGTATTCCT 854 36 100.0 35 .................................... ACATGCTTGGTGTTTTCTCAGTGGAACTTGTGCTG 925 36 100.0 35 .................................... TCAGCTAATGCGCTACGAGATGACCAGCCTGTTGC 996 36 100.0 35 .................................... CTCTACTGTCTTTAATCGTGATATGAATGTCGCCG 1067 36 100.0 34 .................................... ATAAATATTTTTATCAATCTGCTGCTAAAAACGA 1137 36 100.0 34 .................................... TTCCGCTTACAAGGCTATTGGAGGTTGTTCTGGA 1207 36 100.0 34 .................................... GATATCACCAAACAATAGATGGCCCTCGTCCACC 1277 36 97.2 0 ...................................T | ========== ====== ====== ====== ==================================== =================================== ================== 10 36 99.7 35 GAAACACCCATGCCCTGATTTCAAAGGGATTGAGAC # Left flank : GATCGTTTTATCTTTGACCCATTCCAGCACACCGTGGGACTAAACACGTACCGTTGCAATATTCTGTATTTTTGTTTAGCGGAGATGATCGCCAGCTTGAACACTGCATGCAGGGGGCGATCGAACTGATTGATGAAAAAGTGGATGATTTGCGTGTTTATCCGTTGCCGAGTCGTGGGCTGAAGGCTCGCATCGGTCAACCCGCCTTGCCAGAAGGCATCCAATGGAGTGGATTGCCCACTGCGTGGTAGCGTACAGCTTTTCTGAAGCGATCAATCGTCTGAAAAGAAAGCCAGATCAGTTACAGTTCGCTCTTGTAAACATGGCGGGATCGTTCAAAATATCAGAAAATAAACCAACCTCAGATATTTAAACTTTACCGATTATTGTATTAATGGAACAAATAACCAACTGACAGGAGACATCTTGCAGCTTCTTACCATTTTTCCTCTACACCCTTTTCAAGGTATTGATTGTAAAGAGAAAAATGACAGTAGTCA # Right flank : TTGGCATACAAGCCGGTATTTGTTTTCCTCGTCATCACGAAGCCGTCAGGCTATGGTGATCCACTACCACCGCTACCACTTCACTGGATTGCTTCACTCCTTGGGTGTGTGCAAAAGCAAGGGCAGTGAACTGGGTTGCTACGTCAGCCTGGCCACTACCTGCTTTCCGCTGCATTATGCTTGTGGGCGCAGTCGCAGTTAAAGGCTGGTTTGCTCACAATGGCACGTCAGCTCACCAAGACAAGACGCTGTATGCTTGGCTTCGCACGGTTCATTCCCCATAACCCCCCTGCACAACTGTAAAATTACAGAATTACGCAGAAGTCTTTTTGCAGAAAAGACTGTTATCTTGGACAAGGAGTTTTCGTAATGGATAAAGCAATATATAAAGAAAGGTTTCCGGATTTCTTTGCTGATGCGCCGGCTGTAACCCTACGCGATCCGCTGGCACAGTTTCTCGGCACAGCACGTGACGGGATCATGGAATACCGGTATGCCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAACACCCATGCCCTGATTTCAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 18719-20266 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMTW01000017.1 Nitrosomonas eutropha strain Nm14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 18719 37 100.0 34 ..................................... AATAACTCCCTCAATTCCTTGCCCGGCTTTAAAT 18790 37 100.0 35 ..................................... GCCGCCATATTGATTGACGAATGTGAAGGCATGAC 18862 37 100.0 35 ..................................... AGATTGATGTGCTGACAACGGCGTCCGTAATGAGC 18934 37 100.0 35 ..................................... TGCTTTAATTCTGATAAAATACTAACTTCACCAAC 19006 37 100.0 34 ..................................... CAGCAGAGATTTGTGCGATCCTAACCTGTGAATC 19077 37 100.0 37 ..................................... AAAAACGGATCGTCGTTTGTGGTCGGCCCCGGATCAA 19151 37 100.0 35 ..................................... GTCAATCAGTATGGCGGCAAACTGATTTCCCAGTC 19223 37 100.0 37 ..................................... GTCTCCATCCGCGCTCATGGCAACCAGTGTAATAGTG 19297 37 100.0 35 ..................................... CAAATCAGGGCAAATCTCTTTAAGCAAATCCTGGT 19369 37 100.0 35 ..................................... AACCGCATCAAAGGATCATCCAAAGATGAGATCGA 19441 37 100.0 35 ..................................... TATTACTCCCCATCGGAAGAACGCCTGGTTATGAA 19513 37 100.0 35 ..................................... CAGACTTGTTTGTGCCCGAGTGGAAATTGTTTATA 19585 37 100.0 35 ..................................... AGAAAGATCCGATCTGCTATCAAGCTTGACAAGTT 19657 37 100.0 34 ..................................... ATGTATTGGCGGGTACACAAGATTTGTCCGCTGA 19728 37 100.0 35 ..................................... TTTTACCCAAAGACGATCACCTATCCTCCCATATG 19800 37 100.0 35 ..................................... TTGTACTCAGCGGGAGCAAGTACCGTCCAGGTGTT 19872 37 100.0 35 ..................................... CTTCATTCAATCCGATCAATATCGGATACCGTTAC 19944 37 100.0 34 ..................................... TGCCAATAGACAGCGTGTTGAGGAAAATCAAGCC 20015 37 100.0 34 ..................................... CCTATCTGTAATCTATCTTTTGGGACTTGAGGGT 20086 37 100.0 34 ..................................... TTCTGCGGTTTACGATATCAGCCTTGCAACACAA 20157 37 100.0 36 ..................................... CCGAGGAATGGTTAAGATATTTTGGCCTGGCCCTGG 20230 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 22 37 100.0 35 GTAGCGCCCGGTCACCCGACTGGGCGAGGATTGAAAC # Left flank : GGTTATCTCCCTTTCCTGACCAGATAGTGATGCTGATTATTGTTACCTACGACGTTTCAACAGAAACCAAAGCTGGCCGCAAACGATTGCGACGAATCGCAAAAGTTTGCGAAAGCATCGGGCAGCGTGTGCAAAAATCCGTATTTGAATGCCGTATTGATTTGATGCAATATGAAGAACTGGAACGCCGCCTGCTGGCAGAAATAGACGAGCAGGAAGATAATCTGCGACTGTATCGGTTAACCGAACCAATTAAACTCCATGTAAAAGAATATGGAAATTTCAAGGCAGTTGATTTTGAAGGGCCACTCACCATCTGATACGCGCGAACCTGTAGCATCGGCCAAATACCGATCGGTTCGCGCCACATCTAACTACATGATACGGAATAGAAAAATAATTTACCCCTCCTTTTATCTGTTACATGCAGTCAAGGAAAATATCATGTTCGCGCAAACTGCTCGAATTTTGATGATGTATCAAGAAGTTGTAACTGTACT # Right flank : CATGAGAATGATCCGGTGGAGCGCGCCGGGATTGAGTAGCGCCCAGTCGGGTGACCGGGCGCTACTCAATCCGTTGGAAGTGACTATACAACCTGGCGCGAGGTCAGCAGTAGCCCAGTTAAAAACCGCTTTGTGCGTAAAACCAGAGCTTTGATAGGCTTGTTTGGGTCACTATGCGCCTTATCATAGAAAAATCGGGCTTGGCTGAACCATCTTTCTAATCAGGAAAAATTATGCCACACTCATTCTTCTCCAAATTAGTGGATTCTATCTTTCACCAAAGTTATTTTTCATGCTAAAGTAGTAATCAATTACTTACTTTAAAGGTGTAGGCAGTGAATGAGCGTCCTCAATACTTGTCCGCTGAAGAGCGACGAGCAGCCACAGTGCAAGCAGTGCTCGATTTGGCTGCCGAGCAGAACCCGGCCGAGATCACAACCACAGCCATTGCTGACCGGATGGGTTTGACGCAGGGCGCGTTGTTTCGTCATTTCCCCACC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCGCCCGGTCACCCGACTGGGCGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-15.40,-11.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : NA //