Array 1 2927020-2925340 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012514.1 Salmonella enterica subsp. enterica serovar Thompson strain RM1986 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2927019 29 100.0 32 ............................. AGTTTATTACCCCGCCATTTTTCAGTCGTCGC 2926958 29 100.0 32 ............................. CGGTACGACGTAAACTGCGCGCCCGGACTGAT 2926897 29 100.0 32 ............................. GAGGCTATCGGGACACAGGCAAACGTCGTGGC 2926836 29 100.0 32 ............................. TTTGGTTGATGCGTCAAACCTCGCTAACTTTG 2926775 29 100.0 32 ............................. GCGGAATAATAAATGGAGTGCCATTTGTAGCA 2926714 29 100.0 32 ............................. GAGCGATGTTGGCATGGCATTGGTTTACTGTA 2926653 29 100.0 32 ............................. TAGAGCCGTGTGTTAGCAGATAATCAGTATTA 2926592 29 100.0 32 ............................. AAGCCGGACCACATTTTTCTTGCCGAACTCAC 2926531 29 100.0 32 ............................. GCTGTTGCCGACGTCGGGCTTAAACACCACTG 2926470 29 100.0 32 ............................. GACGCTTCACCTGCATCAAATTCTCCTCCAGT 2926409 29 100.0 32 ............................. GCGGGCAACAATTTTAGAGGGGCTGCATTCGC 2926348 29 100.0 33 ............................. ACTACATAGATAACCAAAAATCCACTGGCAAGC 2926286 29 100.0 33 ............................. CGCACGCGGGTTGCGTAACGGATATACGACAGC 2926224 29 100.0 32 ............................. TCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 2926163 29 100.0 32 ............................. TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 2926102 29 100.0 32 ............................. GGACAGCACAGTTGATTACAGCAAAATTTACG 2926041 29 96.6 32 ............T................ ACACGCCAGCCAACAATATTAATTTTGTCGTC 2925980 29 100.0 32 ............................. CCTTGGCGGCAGCCACCTGAGCAACTGTCGGG 2925919 29 100.0 32 ............................. CAGCTTCTTAACGAGGAGATTAACAGCGACGT 2925858 29 100.0 32 ............................. ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA 2925797 29 100.0 33 ............................. GGATAGGGATCGGTAACTTTGCCATCGATCGGC 2925735 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 2925674 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 2925613 29 100.0 32 ............................. CACCCAGCGGGTAAACTGATCAGCAGCAGCAC 2925552 29 100.0 32 ............................. AACCCTCAGAAAATAATCCAGACGTTACCGAA 2925491 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 2925430 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 2925369 29 93.1 0 A..............A............. | A [2925342] ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAATCTGAATCACTGGGTGATAGTGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGAAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2944316-2943190 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012514.1 Salmonella enterica subsp. enterica serovar Thompson strain RM1986 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2944315 29 100.0 32 ............................. TGATAACGCATGGGAGTCCAGATTACAAATTC 2944254 29 100.0 32 ............................. TGCTGGATACACGCGTTTCAATGGTCAGAGTT 2944193 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 2944132 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 2944071 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 2944010 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 2943949 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCAGACCGATCGACTA 2943888 29 100.0 32 ............................. TCCGCGGTGATAGTATGCGGGGAACTATAGAC 2943827 29 100.0 32 ............................. GGAAACGAAGATGACCTTTATTAGAGATATCC 2943766 29 100.0 32 ............................. TGCTGAATCTTTGCGAGTGGGATGATGGCACT 2943705 29 96.6 32 .....T....................... CCGCTACGATCTATTCGAATCATAGTGGTGCG 2943644 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 2943583 29 100.0 32 ............................. TCCTTTTATTCTAATGGGTTAGATAGGGTAGA 2943522 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 2943461 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 2943400 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 2943339 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 2943278 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 2943217 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGAAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //