Array 1 3-581 **** Predicted by CRISPRDetect 2.4 *** >NZ_VESA01000031.1 Escherichia coli strain KCJK8926 NODE_31_length_20910_cov_7.348265, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 64 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 125 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 186 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 247 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 308 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 370 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 431 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 492 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 553 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 10 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTG # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1412-285 **** Predicted by CRISPRDetect 2.4 *** >NZ_VESA01000532.1 Escherichia coli strain KCJK8926 NODE_534_length_1423_cov_7.311728, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1411 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 1350 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 1289 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 1228 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 1167 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 1106 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 1045 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 984 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 923 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 862 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 801 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 740 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 679 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 618 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 557 29 100.0 32 ............................. CCTAGCCCGATTATCGGCATGAGCGATGCGGA 496 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 435 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 374 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 313 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTTATGTTTAG # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //