Array 1 72446-71014 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059899.1 Streptomyces sp. M54 plasmid pLBRS Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 72445 29 100.0 32 ............................. CCACACTTTGCAAGGTCGAGTTTTCGGCGGAT 72384 29 100.0 32 ............................. GACCTGGCCCAGTCCCTCAAGTCCGCATCCCG 72323 29 100.0 32 ............................. TCGATGAACTTCGTCGGCGCGAGGAACGTCCC 72262 29 100.0 32 ............................. GACACAGCTCGCGGCCGCACTACGGCACCCCT 72201 29 100.0 32 ............................. TCGGCCCGATCGGCACCCGCACCCTGCCTGGC 72140 29 100.0 32 ............................. TATAGGACAACACCGCAGGTCCGCACGGCTGT 72079 29 96.6 32 ............................T GAAGGGAGGGAAGTAACCCAGAGTGAGGATTT 72018 29 100.0 32 ............................. GTCAGGCGCGTCGCCATCACTCACCTCCGGCT 71957 29 100.0 32 ............................. CAGCTGATGCGGGAGTACGCGTCGGCCGAAAG 71896 29 100.0 32 ............................. GACGGGCGTAGGGCGTGGTGCGACTGGTGCGG 71835 29 96.6 35 .........................C... CGCCCTCGCTCTGTGGGGGGGGGCGTGTGCCATGC 71771 29 100.0 32 ............................. CCCGCCCCGGCCCCAAAGGCCACCGCGGACTC 71710 29 100.0 32 ............................. GGTGGCACGTCGATGTCGCGCGTCGACCCGTC 71649 29 100.0 32 ............................. TCCCCGCCCGTGTTCGTCCCCGACACTTGGTC 71588 29 100.0 29 ............................. CGACACGCAGTGCGTCCGCCGCCCCGGCT 71530 29 100.0 32 ............................. AAGCAGGAGAACTACAGCGACGTCGCGTACAA 71469 29 100.0 32 ............................. GACTTCGACGCCCGCCCCCTCATCCCGGCCTG 71408 29 100.0 32 ............................. CCAGGACGGGATGGACCGGGCCCTGATCACCG 71347 29 100.0 32 ............................. TTCCTCCACTTCACCGGGCGTCCACCTCCGAA 71286 29 96.6 32 ............G................ TGGCAATGCGGGGTGATTGGTGACGAGTCGGC 71225 29 96.6 32 ...........C................. GTTCTCGGAGATCTGCGCCGTCTTCCGGGCCC 71164 29 100.0 32 ............................. TCGGCGCGGGCCCCGGCCCAGTCCTCGCCCCG 71103 29 96.6 32 ..............T.............. ATGCGGCTCAGGGTGGACATCGAGCGAGTCGT 71042 29 93.1 0 ........G.............G...... | ========== ====== ====== ====== ============================= =================================== ================== 24 29 99.0 32 CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : GAGCGACAGAGGCCTGCATGTGGCGTCCGGAGTGAACTATGGAACGGACGAGCACGAAGCAGCAATCTGGTGACCGTGATCGTCCTCACCAACTGCCCTCCAGGCCTGCGAGGCTTCCTCACCAGATGGCTCCTGGAGATCTCCGCCGGCGTGTTCATCGGCAATCCTTCATCCCGCATCCGAGACGTGCTGTGGGACGAAGTCCAGCAGTACGCCGGACAAGGCCGTGCGCTTCTCGCCCACACGACCAACAACGAGCAAGGCTTTACGTTCCGTACCCACGACCACGCCTGGCACCCCACCGACCACGAAGGCCTCACGTTGATCCAGCGCCCCATCGACAGCAAGGGCGCAACGAGCAGTGCGAAGAAGCCAGGGTGGAGCGCAGCATCCAAGCGTCGCCGATTCGGAAAGAGATAGGCGAAATGTCCGCTATCTCGGAATCGGTGAAAGTGTTCGAGGAACTGATGAGCCCACGGTAAAGCTGCAGGTCATCAAGT # Right flank : GAGCCGCTTAAGTACGAGGGCCAGACCGAAGACTGTTCCCCTGAGCCACGAGGTGCGCTGCTCGAGTCGTCGTCCGCCATGCGAGCATGAGGGATCGAGCACCCGGTCGTCTTCGAACGACAACCCGGGCACCTCCAGCCGCCTCCACCCGCTCCAGCGACCGGAGTTTGGCGAGCTGCTGACGTACGCTCGGCCGGGCGGTCCCGTGCAGATCTCCGTGATGTTCCGCCGCGTGCGCGGCGACCAGCACATCCTCAACGTGCTTGAAGTCCTTGCACCGTGACCAGCTCGCCCTGCGCATCCACGACGGCGCGTTCTCCTCGATGGACCTCGCCGCCCGCGCACCGGCGAGCTGCTGTCCACCGTGAAATTCATGGTGCAGCCCCTCGCCGGAGGCGGGCGCGCTCGCGCCTCCAGTTTCAGTCCGCAGCCGTCCGGTGAACCGGGGGCCTCGCTCGTAGGTTCGGAGAACGGCCCGGCGGCTTTGGAGGATCACGGGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 82013-84175 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059899.1 Streptomyces sp. M54 plasmid pLBRS Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================ ================== 82013 29 96.6 92 ........................C.... ACGGTGCAGCGGGTTCTGGATACGGCGAAGGACTGCTCCGCACGCACATGCGGATGGCCCTGTGAGCAAGGCTCGACTGTGCTAACTGCCCC 82134 29 89.7 32 ........T....GT.............. AGCTCCGCGATCTTCGCGGCCACAACCGGGTC 82195 29 86.2 32 T..........G.GT.............. TGCACGGCGGCGGTGATCCCGGCCCGAACGAC 82256 29 96.6 32 ....................A........ TCGGTGGTCTCGGTTTCCGGCTCGTTCTCGAT 82317 29 96.6 32 .............G............... ACGTCTGGGCCAACGCCCTGGTGCCGGGCCTG 82378 29 100.0 32 ............................. CGCACGTCGTTGATCGGCGGTATCTGATGGCC 82439 29 100.0 32 ............................. ACGACCGTGTCGAGGACACCGGCTGCTCCGCC 82500 29 96.6 32 ..............T.............. CTCGACATCCACCTGGTGGAGCGCCTCGGCCT 82561 29 100.0 32 ............................. AACATCACCTTCAACGAGCACGTGGGAACGCA 82622 29 100.0 32 ............................. GACCGCCTACGGGCCGGGCGGCGCATGGGTCA 82683 29 100.0 32 ............................. CCCGACGGGCCGGGCAACGCATTGGGGCTGGA 82744 29 96.6 32 ............................T GGCCTCGGTCGCGGTGGCGGCCTTCTTCTCCT 82805 29 96.6 32 ............................A TCCTGGAGGCGGTCGGCGTACCCGGCGTACTC 82866 29 100.0 32 ............................. CCGCCCTCGATGATGACGACTCCCTCGCCCAA 82927 29 100.0 32 ............................. GACCCCCGCATCTTGGCGTCGATGTTGAACTC 82988 29 93.1 32 ...............A.C........... GTTCCGCCGGTGCTGGTGGTCTGGACGCAGGC 83049 29 86.2 32 ..................A..G...C.T. GAGTAGCGCGTGACCACCGGCAACCCGGTCGT 83110 29 100.0 32 ............................. CGCCTCCCGCCGGGCAACCAGGCGGGAGGCGG 83171 29 96.6 32 ..............T.............. GGTGACGTCGTCGAGGGCCGGGCGGTCGAGGA 83232 29 100.0 32 ............................. GACTTCGGGCCCGGCCACCGCGAGGAGCACAA 83293 29 100.0 32 ............................. ATCATCCGACGCCACATGACTCCACGCGAGTT 83354 29 100.0 32 ............................. GCCAGCTTCTGTGCGGCGTGAGCGATCGGGTC 83415 29 100.0 32 ............................. CCGAGGTGGGAGGCTATGGCAAGGCGCACCGG 83476 29 100.0 32 ............................. GATCACGAATGCGATGCGGACCGGCGCCTTGC 83537 29 100.0 32 ............................. TTGGCCGACGGGCGGTGGCATCACCTCGCCTA 83598 29 100.0 32 ............................. GACGGCACCCTGAACCTGCGGGGCGCCGCGAC 83659 29 100.0 32 ............................. CCGAAGGTGGTCGCGGCAGCCCGCCGGGACAA 83720 29 96.6 32 .........................C... AGGCCGCCCCACACGCCGTGCCGGTACGGCAG 83781 29 100.0 32 ............................. ACGACGCGGGCGGCCGAGCTGTTCGCGCCCGA 83842 29 100.0 32 ............................. CAGCCCTGCCCGATGTGCTGCGCCTCGATCGC 83903 29 100.0 32 ............................. GTGATGCCGTCGGTGGTGGTGAAACCGACGGA 83964 29 100.0 32 ............................. GCGTCCCGCGCGGGCCCAGTCTCGTCGTGGCC 84025 29 100.0 32 ............................. ACGCGCACTCTCCGCTCGGGCGGGCCTCCGCT 84086 29 100.0 32 ............................. GCTGGGACCCGCATACGCTGATGTCAGCAGCT 84147 29 82.8 0 ..........T..G.......GC...T.. | ========== ====== ====== ====== ============================= ============================================================================================ ================== 35 29 97.5 34 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : AAGACTTCCTCCTGAACACCATGGCGATCCCCGCCCACTGGTTCAACGGAAGAAACGCACTACCCCACCCCGAGGAATGGCCACCGGCCCGCGCCGCCCCAGCGCTGAAGAAGACCCGCACAGCCCTGCTGGACCCCGCCAGTGGCACGTGCGTCAGCGGACCTCTCGGCCTTACCCTCTGCCCCAACTCAGGACTGTCCAAGTGACCACACCACTGGAACCGCAGCCCAGCAGCTATCGTGGCTCACCTCCCGGTCAACCGGGAAATAGGCCAAGAGTTTGTGCATTCTGGCCTTACTCCCCACACCCGTGGGGATACCTTGCCGCCCGCGCTCACGCGGGCGGCAAGACCTTCACCAAGCCGCACATGACTTCGCAACACGGCTAAGCCAGCCGCCCGGAGGGCGCCCGCTCACAGAAGGGCGCCCCACACAGCGAGGATGTCCGTTGTGCGAGTGACATCCAGCTACTCCCTGCACTCGGGTATCGGTGACAATCAA # Right flank : CACCTCCGAGCAGCATCAGTCCGCGTCGCGAAGCGCTCTTGTGCGCAGCGGAGTTGTGAGCCACCTTGGGCGGGTAGAGACGGATCGGGGCACGGCCTTGTGCCGGGGGTTGGGGGCGGCTCTTGTCGAACGGGCGCGTGCGGCTCAGTGGCGGAACAGCGTGGCAAACCGATTTCCGGCGGCGAACAACAGGCCGCCCGGTTCTGAGCGCGATGGATATCGCGATGATCCGACGCTCGCTGAACGGCACGCTCACCGAATTGCAGCGTGCGATCGATCGCTTTGACGTGGCCAAGGCGGCGGATCTCTTCGAGTGGGCCTGGCACCAGGCTTCCCAGGCTCCGCCGGGCGAGACCCGGGAGCAGCGGGCCCAGCTGAGGGATCTCAAGGGAGTGTTGGGTTCACGCCGGTGGCGAGAGGAGGAGCGTCGCCTGGCCGCGCAGGAGCTGACTCCGCGGCCAGTGGGAGGCCCGCCTTCGCCTGGTCGGAAAGCCGCGAAG # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.12, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 85189-87034 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059899.1 Streptomyces sp. M54 plasmid pLBRS Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================================================================================================================================== ================== 85189 29 82.8 202 .........A.G.A..T.A.......... ATCGGCATGGGCGCGGTCGCGCTTGCCCCCTCCGTGATCGCCGGCCAGCAGGCGCGATTACCTGGCGAGGCCAGAACTGTTCACCGGGTGCTGAGGATAGCCTTGTCGTCACGGCAGGAGAAAGCCAATGGTCGATATGTCGGATTCGGTGAAAGTGCTCGAGAATCACACTTTCCCACTGTAACGCTGCAGGTCAGGAAGC 85420 29 100.0 32 ............................. ACCCTGCCCACCCTCACCGGAGTGCAGATGGT 85481 29 100.0 32 ............................. AACTCCTGATCTATGACGGTGCGTCAAAGCCA 85542 29 96.6 32 ..............T.............. CGGCTGCGCGCCGCCATCGATCACCCCGACAG 85603 29 96.6 32 ............................T GACTCGCGGGCGACGACCACGAGCCGCGAGTT 85664 29 100.0 32 ............................. GCGGGGCGGAGGCTCACGGTGTACGTCGCGCC 85725 29 100.0 32 ............................. GGATCGGCGTCCTTCGGCACGGCGAACACCAC 85786 29 100.0 32 ............................. GACCTCCACCGTGACACATGCGCGCTGGACCA 85847 29 96.6 32 ..........A.................. GGGACCGACGCCCAGATCACCGCGGCGATCGC 85908 29 96.6 30 .G........................... GCCCCCGCCCGCACCTCTGTCGAGGGGGTC 85969 29 100.0 32 ............................. ACGATCGCCTACCGGGGCAGCGCACTGCCGGG 86030 29 96.6 32 ..........................T.. GACGAGGTCGGCATCACCGCCGCCGGGTCCGC 86091 29 100.0 32 ............................. GAGCTGTACGTCGACGTCCCCCGGAAGAACGG 86152 29 100.0 32 ............................. TTGATCCGGCCTCCCCCGCGGACGCCGAGGAT 86213 29 100.0 32 ............................. CACCCGAAGACCCGGTTCGAGGACGTCGACTT 86274 29 100.0 32 ............................. GAGCCCGGCCCGGTAGAGCTCGCACTCGCCGG 86335 29 100.0 32 ............................. AGCTCCGGCTCTCCGGTGGCGAGGTCCTCGAG 86396 29 100.0 32 ............................. GAGAACGGCTCGGCTGCGCCGCTTGGAGCGGG 86457 29 96.6 32 ...............C............. GTGGCCGGGGTCACCGGGTCGAGGGACGCGGC 86518 29 100.0 32 ............................. CCCACGCCGCCCACGACGTACACGATCAACTT 86579 29 100.0 32 ............................. TTGCTGAGCAGCAGTGGGGGGCGGCCATTGTC 86640 29 96.6 32 .........................C... ACCGGGCCGCGCGGCTACAAGCTGGCCGACCT 86701 29 89.7 32 ...........G.A.......G....... CGATCGGTGGCGGTGCCCGAGCCTTTTGACGC 86762 29 75.9 32 G.CG.......G.A.......G......G TACGAGCCCGACGCCGGGTGCGTGATCTTCTT 86823 29 75.9 32 G.CG.......G.AT......G....... TACGTCGAGATGGAGATGACCGACGGGTCGAC 86884 29 72.4 32 G.CG.......G.AT......G......G CTGATCTGGGAGCCGGCGACCGGCTTAGTCTT 86945 29 65.5 32 G.CG.......G.A.......G.A.CT.G ACGGAGAGGTGGCCGAGGGCCATGCCCTCCAC 87006 29 72.4 0 G.CG.......G.........G.A..T.G | ========== ====== ====== ====== ============================= ========================================================================================================================================================================================================== ================== 28 29 93.2 38 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : ACGGGTTCCCGTGGTACGGCCGAGGACGGCGTGGTCCTCCGACACATCTCGGGCAAACGTTCCAGCCCCAGCCCCATTGCCGGTGCCCGTTACGGAAGTGCGTCCGGTTCTTAAGGACGTTCGGGCGTCGGGGTATCTGGGGGCGGGACGGCTCGCAGAGCTCGCGACGGACCTGCGGCCGCTGCTGGAGCAGACCGCTCGGGCCGGAACGACCACTACTTGGAAGGCGATCCGCCAGCGTCTGCCCGCCCTGGCGCGTCTGCACCGCGACGACGAGAGCGTCCTGCTGTGGCTTGTCGACGACGAACGCGATCAGGGGGATCCTCTGCTGTCAGCCCTGGTCACGGTCGGCGACCGGCAGATGCACCCACGATTCCCCGCCATCGCTGAGCAGCTCGGCGTTACAGCCGGACGCTATCCGACGCAGCAGCGCTCCACCTGGAACTACGAAGTCCTGAAGTCTCATCAGCGCTGGCGCCACCGGAACTGATGCTGAAAGT # Right flank : GGCCGATCGCGCTGCCAGCCTGGGCGGCATCCGGCCTTCATGCCGTACGACGGTGGTGATGCGTGCGCCGCTTGGGCTTCTTCGTCTGAGTGGAGCCGTTCTTCTTCGCGGCCTCCCGGGCCGCGTTGAGGGCCTGGCGGGCGAGGTCGACGCCGCTCAGTTCGCCGGTCATGCGATCACCGGCCCGGTGGCGTCGCCGTCCAGCGGGCGCGCGGCAAGGCCGGGCAACCGCTCCGTCCACGACGCGGGCCTCTCGGTCCGGGCGGCGGACCGCTCGCGCAGCTGCTCCAGCCGCGCCGCCAGCAGGTGCTCGGCTGCGCGCTCCCGCGCCGTGTCGGCGGCGTTCGTCGCGGCGGCGACGGCGTCTGCGCCGGTCGGGTGGTGCTGGAACCAGGGGCGGCACTGCTCGGACCGGTACGCCCGGCGGGCCTCGGCTTCGGCCTCCTCGGTGCGACCCAGCAGCGCCAGGGCGTCGTCCTGGTACTCGCTGACGGCCTGCT # Questionable array : NO Score: 5.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:-0.58, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [8-45] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3333607-3334773 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059898.1 Streptomyces sp. M54 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 3333607 30 96.7 31 .............................T GGACGCATCCGAACCTGCCCCGGCGCTCGAT 3333668 30 100.0 31 .............................. ATCCGCCGGCGACCAACGAACCGTAGGCGGT 3333729 30 96.7 31 .............................A TCCCCACCAGCCCGCAGGCCGACCCCGCCGA 3333790 30 96.7 31 .............................G AGCAGGCCCTCGACCTCTGGCACGAGTTCGA 3333851 30 96.7 31 .............................A AGGGCCGCAAGGCCGCCATCGACCTTCAGGA 3333912 30 100.0 31 .............................. AGCCGCCGCACTGGTCGCACTGCAAGGTGTT 3333973 29 93.3 31 .....................-.......G GCGAGGAAGGCGAGCGAGCTGGACCGGGTCT 3334033 30 96.7 31 .............................G CTTCGGGCAACAGGGTTGCCTCGTCGACGTA 3334094 30 96.7 31 .............................G GCTCGGCCTCGGTGGGGAGGCCGATGGTCTT 3334155 30 96.7 31 .............................T CCCGATGGCGGAGGAGGCCGGTACGGTCGGC 3334216 30 100.0 7 .............................. GCCTGCA Deletion [3334253] 3334253 30 86.7 31 C....G..T....................G CCAGGAGGCGTGCGACGGACGCACCGCCCTT G,AG [3334263,3334266] 3334317 30 96.7 31 .............................A CCGCCTACGTGCCGTCCGGGCAGCGCCTCTA 3334378 30 93.3 31 ..A..........................T CCGGCTCGGGGTCATACCCCGGAATCTCGAC 3334439 30 100.0 31 .............................. AGTTCCGTAAGGACGTGGCCGCACGGCTGAA 3334500 30 96.7 31 .............................A TGCAGCAGACCGGGGTGACGTATCCGGCCGC 3334561 30 93.3 31 ..........................A..G CCATGACCGCGGTGGTGATGTTCAGGGCGCT 3334622 30 100.0 31 .............................. TCAGCGAAGGCGACCGGCTGTACGTTGGCTG 3334683 30 96.7 31 .............................T GCGGCACCCCGCTCGAAGGCGGTCCCGATCG 3334744 30 96.7 0 ............................G. | ========== ====== ====== ====== ============================== =============================== ================== 20 30 96.5 30 GTGGTCCCCGCGCACGCGGGGGTGGTCCCC # Left flank : AAGATCCCGCCCCGCCTCCCCACAACGGCAGAAGTCGACCCGCCGGGCGCCAAGGAACCCGCCCACGAAACCCTCGTCGAGTGCACCAACTGCCGCCGCCCAGGCCCATCGGAAGCCCTTCCTGACGGTCTCTGCCGCCCCTGCCACCGCGCCCACACCACGGGTGGCAACGACACCGGCACACCCACCCCGGACGAGGTCGCCGCCGTCAAAGCCCACATCGCCAACCTCCGCAACCTCCTCAAGCCCGCCTAGCCCCCCAACCGCCGCACCCCTCGTCGGGCGGGTCGGGCTTACCGCACCTGCGGGGCCTACACCTGCGAAAGACAGAGCCGTACCTCTTGCACCGAAGCCGGGCCGCCCAGTCTGGCGGCGGGCAGAATGGCATCAGCCGAACCACACGCATGCCCCCTTTTGCGAAGGAAGGCGAGATATGCCGGTTTCTCAACAACATAGTAAAAACCGCCTTCCCACCACCTAAACCCCCAGGTCACGAAGGG # Right flank : CATAGATTGCCCCGGCCGCCCCGGAAGGAATGATCAAGAATGCGACCCGCCCGATTCCAGGACTTCGCCGTAGAAGCGCTCGCCAAGGCGCCCGACGTCAAGAGCGTCGAACCGTGGCAGGAGCCGGACCGCCCCTTCGGCGTGCACATCCTGTTCATGAGCGGTGCCCAGATCTGGGCGGCCATCACGGCCACAGCCGCTCCCGGCGAGGACTACAAGCAGCCGGAGAACCCTGTCAGCTACGAAGCTCCAGCCGAGGTGGCGTACCCAGACCTGTATGAGGGCGGGAAGGTCACCCCGCAACTGGCGGAGAAGTACCTTGCCGCAGCTTTCACGAACAGTGGCTCACCGGAGATCGAGTCGGTATACGCCTACTCTGTGAAAGACCCCGCCACCGCCCACCCCGGCCTCGGCCTACGGTTTCACAGCGAGGCCCGGATCCAGTTGCTGTTCCAGCACACCGCCCGCCCCGGCCAGGACAAGGGCAACTCACCTTTCGA # Questionable array : NO Score: 5.32 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:-0.11, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4486892-4486557 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059898.1 Streptomyces sp. M54 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 4486891 30 96.7 31 .............................A TCAGCGGCAGGGACTCGGGCAGGGTGTACGT 4486830 30 96.7 31 .............................T CGTGGCCGGCCACGACATCCGTGTACGCGGG 4486769 30 93.3 31 .........A...................T GCTCGGCCCAGTCCGTGGCAGCCTGCTGTTC 4486708 30 100.0 31 .............................. CCGTACGCGCCTTCCAGCGCGCACAGGGGTG 4486647 29 90.0 31 ............AT...........-.... ACGACAGTGGTCGGCGCATCTGTACGACGGT 4486587 30 80.0 0 ...........C.GG......C....TT.. | T [4486569] ========== ====== ====== ====== ============================== =============================== ================== 6 30 92.8 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : GACAAAATCCCACCCCACATCCCCAGGGCAACAGAAGCCCGATCGCCGAGCACCGCCAAACCCACCAACGAAGCGCTACTGGTCGAATGCACCAACTGCCGCCGCCCAGGCCCACCACAAGCCCTCCCCGACGGCCTCTGCCGCCCCTGCCACCACGCACACACCGCCGGCAGCAACGACACCACACCCACCCCAGACGAGGTCGCCGCCGTCAAAGCCCACATCGCCAACCTCCGCAACCTCCTCAAACCCGCCTGACCCCCATTCGACAGCCCGCCGCTGGGCTGGGCTGGCACACCACACCCCCGGGGGGCCAACCCCTCGGAAGGCAGAACCGCGCCCCTTCCACCGAAGCCCGGACGATGAGAACAGCGGTGGGCAGAATGGCATCAGCCGAACCACACACGCGACCCCTTTGCGAAGGAAGACGAGATATGCCGGTTTCTCAACAACACAGTGAAAACCGCCTCCCCGTCACCTAAACCCGCAGGTCACGAACA # Right flank : CGGGTGCTCGCGGTACCGCTTCGGCCGCCCCGTGTCCCGTAGACGCCCAGGGGCACTCGGCGCGACACCGGGCCGCCCCGCCCAGTGCCCTACGGAGAGGCTCCCCGACCGCTCAGCCCAGCCCCTCCTCCACCAGGGTCGCCCACTGCGCCACCACCCGGGCCCGGCGGGCCGTGTCGTCGGTGAGGAGGTTGGCGAGGCCCAGGCCGCGGGCCATGTCCAGGAGGCCCTGGACCGTTTCGCGGGCGCCGGGGCGGGACTCGTCCGCGCCCAGGAGTTCGACCGCGATGCGGTGGGTCTCGCGGCCCACCCGCGCCTCCAGTTCCGTGACGCGCGGGCGGAGCTGGGGCTCGTTGGAGGCGGCCACCCAGAGGTGGAGCGCGGCCCGGAAGAGGGGGCCGGTGTAGAGGTCGACCAGGGCCGCGACCACCTCCGCGCGGCCCTGGACGGGGAGCGCGCGCAGGGCCGCCGAGCGTTCCTCCGCGACGTACTCCACCGCC # Questionable array : NO Score: 3.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 4491645-4491311 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059898.1 Streptomyces sp. M54 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4491644 29 96.6 32 ............................G CTGGACATGATGCACTTGTAGAGGGTGAAGTA 4491583 29 100.0 32 ............................. AGGCCGACCAGCGGGCGGGTCTCCAGCGCGAG 4491522 29 96.6 32 ........G.................... GTGCGGGCCATGCTCGTGGGGCGGATTCCGGT 4491461 29 100.0 32 ............................. ACCGCGGTCGCCTACCGCTGGGTGCCGGGCGA 4491400 29 100.0 32 ............................. CCGTACAGGATCGGCTCGCGCCGATAGGGGTA 4491339 29 89.7 0 ..............C......T...C... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 97.1 32 GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : CGGGCATGCGTGATGGCTCCTGTGACGGACACGGGGACGGCCGACGACCGGGGAGGGAAGAGCCCTGCGCGAGCGAGCGCTGGGCGGTGGCCGCGCGATGACCGCGGGTCCCCCGGCTGCCGGGTGGCCGAAGTTGACGCGTCGAAGTCTCGCCGCGCACCACCCACGGGGTCGTCCCCCCAGCAGCCGAACCACGCCCTGCCCGAAAGTGCCACACCCCGCCGACCGACACCCCTCGGAAGTGCTACCGCCGGGCATCCTTCTTCGGACCGATCGCGGCGGCCGGGGCGGGGCCCGGGGGGCTGCCGCCAACAGTCCGGGGTGCGACCGAAGTACGGGACAGGGCGCTGGGTGAACTGGCAGGCTGAGAGACGGATCCCGGGGGGTGCTGACCTCCGCCCACCTGGCAACCCATTCAAAACTTAAGGCCACATATGCCCGACTCTCAAAAAGTTCCCCAAAACGACCTCTCGACCGGATAAACCCGCAGGCCACGAAGA # Right flank : TCCACACCCCCACCCGGCTCCACCCAGCCGGGTGCCCCTCCCCTCATCGCGATACGTACACCCACGCCCCCGTCCACCCGACAACACCGCAGGTCGCGTGCCCTATGGTCTCCGTTCATGAGCCGAACCACGCCGCCCCGCCCGGTGAACATCGAGGCGCTCTTCCCGAAGCTGGGCGCGTTCCGCGGTACGACGACGCGGCTGCACCCGCGCCCCGGTCGTCCGGACGCGGCAGCCAGTTCGGTCGGCGGTCCCATGCTGTGGCCGGCCGACGAACCGTGGCCGGTCTGCACCGAACCGCACAAGCGCAGCAGCGGGTACCGCATCGCGGACGTACGACGCGAGCGCCAGGTGCTCGCGGACGCCTGGGCCCGGGACCGCCCCACCGATGGGGAGCGGGACCTGCTCAAGGAGCTGGGCCGCAGGCACCGTCAGCGCGAGATCGCCGACACCGATCCGATCCCGCTGGTCGGCCTGGCCCAGTTGTACCGGCGGGACGT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //