Array 1 816259-813648 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001857.1 Musicola paradisiaca NCPPB 2511 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 816258 28 100.0 33 ............................ ATTGTCCCGGCAAAGTCTTTTGCCTGTTCATTG 816197 28 100.0 32 ............................ TGATCCCGTTCCAGTTCAACATGGAGCAGACC 816137 28 100.0 32 ............................ ATGACGGTTTTGCCTGTGCTGGTGCAGTCTGC 816077 28 100.0 31 ............................ AAAACTTCGATTCTGCTTCCTTGCCTGCCGT 816018 28 100.0 32 ............................ GTCACAGATATTTGAAGCTATCGAAGCGCTTA 815958 28 100.0 32 ............................ TGTGTGGCGCTCCAACTCCGTGCCCTTCTCAC 815898 28 100.0 32 ............................ ACTGCGAGGTTGTCATAATGGCAAATCTCACC 815838 28 100.0 33 ............................ GCTCGTTCGTCAGCGCGCCGGAACAACTCGGGT 815777 28 96.4 32 ...........A................ AGGTGCAGCCAGACTTCAACGGCCTGCTGACC 815717 28 100.0 32 ............................ TTGCCGCGGCGATCGCCAGAGATGCGGACGGT 815657 28 100.0 32 ............................ GTCAACGTTCAGCTACAGACCAGCGCGGACAA 815597 28 100.0 32 ............................ ATGACCAGCTGACGCACAGTCATGCGGAATTC 815537 28 100.0 32 ............................ GGGAGGCAGAGACGATGACCATCATTCATGAC 815477 28 100.0 32 ............................ AGGGGCTGCACTGCAAATTGCTCTGGCATGGC 815417 28 100.0 32 ............................ GATAGCACTGGCCGCTTTTGCTTCTCCGGCAA 815357 28 100.0 33 ............................ CGGTGAAAATAAGCTCGCCGGTTGCCACCATTT 815296 28 100.0 32 ............................ GAATGCTGCGCCGTTCAGCCCAGCTAGACGCG 815236 28 100.0 32 ............................ ATTGGCGGGTTTGTTGCCTTATCCAACAACTG 815176 28 100.0 32 ............................ GTGAGGGCGCTTACGACGAGAAAGCCGATCAA 815116 28 100.0 32 ............................ CATCGATGATGCGAGTGTTACGGCGTTCGTTA 815056 28 100.0 32 ............................ GACCCCGAAGACAAACCCGCTAAAAAGACTCG 814996 28 100.0 32 ............................ ATCGGCAACGATGCGAAGTCCCGCCGTGCTAA 814936 28 100.0 32 ............................ ATAATGGGGTTATATGTTTTCCCTTTACCAAA 814876 28 100.0 32 ............................ CGCCCCCGCTGCACGTATACGGTAGAGGCCAT 814816 28 100.0 32 ............................ ATAAGTTCTACTGGCTTTTGTGTGGGGTGGAG 814756 28 100.0 32 ............................ ACTCACTTTTGAGGTCGGGGCTTCTTTTTATT 814696 28 100.0 32 ............................ ATCAAGGTCGATAAACAGGATTGAGCGCCCGA 814636 28 100.0 32 ............................ GATGAAATCTGGCACGTCCAGCACAGTTTTAT 814576 28 100.0 32 ............................ TTTCCCAGCCAGCGTCTTCAGTTGCAGAGCGC 814516 28 100.0 32 ............................ TCACCATTAGTGTCGAGAAGCCCGCACAACAT 814456 28 100.0 32 ............................ ATCCCCAATCCACACTCCAAGCATGTAGGCAT 814396 28 100.0 32 ............................ ATGACGGTTCAACCGCAATAACAACTCGGTTT 814336 28 100.0 32 ............................ ATTCATCGATAGAATCCTTTTTCTTATATTGC 814276 28 100.0 32 ............................ GGTACGGTCATTCTGTACTGACTACATGCTTC 814216 28 100.0 32 ............................ TATATCAATAAGAATTCCATGCTGACCATTTT 814156 28 100.0 32 ............................ GATATCGGTCACTACGAAGACGATGACCAAAT 814096 28 100.0 33 ............................ ACGTTACTCACTATCTGTGCGTGAGCGTACCAA 814035 28 100.0 32 ............................ TGTGCGGTCATCTGGTCAACGTAGGTGATATC 813975 28 100.0 32 ............................ GCGAGTCTGATTGTCAGTGCAAGCCGTGGCAT 813915 28 100.0 32 ............................ TTTTTGCGGCGACTCAACCAGCACGGCCTTAT 813855 28 100.0 32 ............................ CGCAGTAGAGCAGGTGAATCGCGAATGAATGC 813795 28 100.0 32 ............................ ACAATCGGCTGAGCACTGCCGTCCACCCTTAC 813735 28 100.0 32 ............................ AATCGCGGGATGGCGGTACATGAATTGATGAC 813675 28 78.6 0 ............A..A...AT.C....C | ========== ====== ====== ====== ============================ ================================= ================== 44 28 99.4 32 GTTCACTGCCGCGTAGGCAGCTTAGAAA # Left flank : GGAGTTGGCGGCGCTGGAACAAACCGGCTGGCTGAAAGGGCTGCGCGACTATACCGCCATCACCGAACCGCTACCGGTGCCTGCGGGGGCGAAACACCGCACCGTGCGCCGGGTGCAGGTAAAAAGCAGCGCCGAACGCCTGCGCCGCCGCGCGGTGAGCAAGGGCCGGATGACGGAGGATGAGGCCGCTACTCGCATTCCCTATGCGGTAGAAAAACGCAGTTCGCTGCCATATCTGCCGCTGCGCAGCCTTTCCAGCGGACAAACGTTTTTATTGTTTGTTGAGCACGGCCCGTTGCAGGACAAACCGGTCGCCGGAGCGTTCTCCAGCTACGGGTTAAGCGCTACCACCACCATCCCGTGGTTTTGACCCTTTTTTTGCGGCCAGTTCTAACGTATTGATTTTTAATACCGCAATCTGGCCGCCAGAAAAAAGGGGTTTTCCGGAAAAACGGCGGTTTTTCTTTAACAATCAGGTGATAAACGATAATTCGCTACAG # Right flank : GGTCGAAGTAAAGATCGGAAGCGACTCGCGCAGATGGGCAGGTTAAAGCGTTTAAATCGGCACATGTGCAATACGAGAATATTGCGACCGCACTGGCGGCTTGCAACGCTTCAACCTAAAGCAGGCTGAAAATGGGGCCTTGCGGCCCCGTCAGGATTTAGAACGACGTCCAGTCGTTGGCATCTGATGCAGATGCACGTTTTTCCCTGAACGACGCCGACGGCGTCGCCAATAATACCTGCGGCGCTGGCTGATACGTCTGCGGCTGGCGTTTCTCGCTTTGTTCCATCAAGTGAAATGCGCTGACCGCCTCCGACAACATCGCTGCCTGCGATTGGAGGGAAACTGCAGCCGATGCCGATTCCTCCACCAGCGCGGCGTTTTGCTGCGTGGTGGCGTCAATCTGCCCGACGGCCAGATTGACCTGGTTGATGCCATCACTTTGTTCGTGGCTGGCCTGAGAAATCTCGTTAATAATACTATGTACATCATGCACATAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCGTAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 824846-828650 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001857.1 Musicola paradisiaca NCPPB 2511 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================================================= ================== 824846 28 100.0 32 ............................ ATTTTTCGGCGCCATGAGTCCAGCCGGTAAAT 824906 28 100.0 32 ............................ AGGATGTCGGCCTGAGCAAACCGAACACCGGA 824966 28 100.0 32 ............................ ACCGGGCGCCAGCAGCAAACCTTTCACCGAAC 825026 28 100.0 32 ............................ GCGATCTCTCGTCTGGTACTTCGTTGGATATC 825086 28 100.0 32 ............................ ACAGCAAGGCATGGACGCAGTGCGGGCCATGA 825146 28 100.0 32 ............................ ATGACGGTTCAACCGCAATAACAACTCGGTTT 825206 28 100.0 32 ............................ ATCTGGTCAATCTCGGCAAGGCGTTGCAGGAC 825266 28 100.0 31 ............................ AAGATCGTGTTCATTTTGAATGGTTTGGGCC 825325 28 100.0 32 ............................ TAACGGCAAGATCGATAAGATTATCGAGTTGC 825385 28 100.0 32 ............................ TCTTCGAATCCCTGCTTGAGCGATGAAAGCAA 825445 28 100.0 33 ............................ CTCCACGATCAGCAGGAGATGCAAACAGGGAGG 825506 28 100.0 32 ............................ AGCCCAAAGCATCGCGGAAAATGGCATCAAAC 825566 28 100.0 32 ............................ GTGGTCTGAGCACAATACAGAAGCGTTCGCCG 825626 28 100.0 32 ............................ AGGAATGTCTTTGCATCAGCCGGTCGAGGCGT 825686 28 100.0 32 ............................ CATCACAATTTACGCTGGGGAGGTGATATGGA 825746 28 100.0 32 ............................ TGCAAAATGACTTCATTGTCTGGCCTGCAACC 825806 28 100.0 32 ............................ GAGCGTGCTCAGCAAATCAGACAGGGAATGAA 825866 28 100.0 32 ............................ GAAATCATATGGGTGGCATTCGGGAACCCGAC 825926 28 100.0 32 ............................ AATGTGTCAGGCGTTACCGTCGGCACTGGCTG 825986 28 100.0 32 ............................ TTGATGAGGTGACTTTTGATGGCGTGGCAGAT 826046 28 100.0 32 ............................ AATCTCTTTGTTTGGGCCACGCTTTTCGGGTA 826106 28 100.0 33 ............................ GCAGATGCTAAACAAGCGCGGCGAGATGTACAA 826167 28 100.0 32 ............................ TTATCGCCTACAAACCAACGGCAACCATCCTG 826227 28 100.0 32 ............................ ACCATACAGAACACTCGCGGCAGATGGCTTAT 826287 28 100.0 32 ............................ AGTCTCGACGCCCAATCCTGCGCCAGCGCATT 826347 28 100.0 32 ............................ TCTTTCAGCATCGATTCCTGCCACTTGCGCGG 826407 28 100.0 32 ............................ AGGTCAGCGAAGGAGACAGTGATCAGCCTGCC 826467 28 100.0 32 ............................ CAAACACCTCGCGCCCCAGCACATTCTGCATA 826527 28 100.0 32 ............................ GTTACACCAAGTTTGGAAAGCTTTTCAAATAT 826587 28 100.0 32 ............................ TGTGGCACTGGAATATGAGAATCAATCACTTA 826647 28 100.0 32 ............................ AGCAGATCACGGCGGTAGAGGTCGTACCCTGT 826707 28 100.0 32 ............................ AACCATCAACGGCGCTGGGGCCAGCGTTATAA 826767 28 100.0 32 ............................ CAGTGGGTGCAGCCATCGCGATCTGTTGCTTT 826827 28 100.0 32 ............................ AGTGGATAGAAGCGTTTTAAAAACTCTTCACG 826887 28 100.0 32 ............................ AGTCTCGACGCCCAATCCTGCGCCAGCGCATT 826947 28 100.0 32 ............................ CGTTTGAAAGGCAATCTGCCGCCTAAATTCTT 827007 28 100.0 32 ............................ TGTTACTCAAAAATTGCTGGGGCTACAGTATC 827067 28 100.0 32 ............................ GTAGCGAGCACACAGAAACTAGTGATAAGCGC 827127 28 100.0 32 ............................ CTGAGGACTATGTGGAGTCTCTTCGGGCCACC 827187 28 100.0 32 ............................ TGTTGGCGGATGAAGACTTGCCCGACGAGGCG 827247 28 100.0 32 ............................ AATGCGTATGGCGTGAGCATGATTTCAGTAGA 827307 28 100.0 32 ............................ GCGAACCAAAAAGAAATGTCCATCTTGCGGTA 827367 28 100.0 32 ............................ GTAACCGCCAGGTGCCAGATACTTACGTAGCG 827427 28 100.0 32 ............................ GCAACCCTGGAAAGAAGGGGAACCCAAAACTC 827487 28 100.0 32 ............................ TGAGTACTGCCAGTCTATTGTTGAATATTTCT 827547 28 100.0 32 ............................ AAGGGGGCGCGCTTAGCTCTCGCTATCAACAC 827607 28 100.0 32 ............................ GCCGCCGCCGGAAGTGATGCAGGGTATGCCGC 827667 28 100.0 31 ............................ AAAGAGGATGTGAAAGACAGGATAGGGCGCT 827726 28 100.0 32 ............................ CGAAGCGCTCAGCCGTGCGGAAGTTGACGGAA 827786 28 100.0 32 ............................ ATTGCTTCCACCGCCCAACATATTGTCCTCAG 827846 28 100.0 32 ............................ TGTCAGCGCCTTAAGGTATTGGTTAGCACCGT 827906 28 100.0 32 ............................ TAATTCCATGCCTCTCAAATGCTTCGATAGAT 827966 28 100.0 32 ............................ GATCTGCTCGACATTCCAGCAGATGAAGTAAA 828026 28 100.0 32 ............................ ATCGCCAATGGATTTAAGCCCGGTGCCGTAGC 828086 28 100.0 32 ............................ GTTGTGGTGGTCACCGGCTGGATCTCCATCAA 828146 28 100.0 32 ............................ TTATCGCGGTTTTCAGCAAGCCATTCATCGAT 828206 28 100.0 32 ............................ ACGACAGATGCGGCGGGGAACTGCTCGTCATC 828266 28 100.0 32 ............................ GTAGCGAAGAACGCCTTCGAGCAATATCAGAA 828326 28 100.0 32 ............................ GATTTATGTCAGGGTTTTGCAACACTCCAGCG 828386 28 100.0 32 ............................ AGGCACGACCGCGACGCACGATAGCGTCAGCA 828446 28 100.0 32 ............................ ACCTGCTGAACTTTGTCAGGCTGGCTGGCTGT 828506 28 96.4 89 ..........................G. TGGTCGGTGCGTTGCGTGGTGCTGGGAGAGGGGGCACTACGTGCTGGTTGCGAAGAAATGGAATCGAGTGGGATGGCGGATAGGGCGAT 828623 28 71.4 0 .......A.T..T.CAA....G...C.. | ========== ====== ====== ====== ============================ ========================================================================================= ================== 63 28 99.5 33 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : TCACCGAGGTGCCGGTGCCGAGCATTACCACGCTGGTATTAGCGATAGGGATATTCCAGTACAGCGACTGATTTCCTTCTTCAGTGACATATTCCACCCGTCCGCCATTCACCAAAATACGGCAATGCTGGAGGTAATAAATATTGGCGCGTTTGGAGTGCAGAATGGTTTTTAAATCCGACGGGCTGAATACGTTATCCATAAAACCGTTTCTCTTAGGTAGCGATAAAACAATCCCATCCTACGTAATAACACGCAGGCTAATAATTCATTGAGAAATACGTAATCTACTGGAAAGTAACGAGAATCAGCCTAGCACAACCCAAACCAGAAAATGAATGACGCCAGAAACACTTTTCCCGCTTCAATACCCTTTTTTTCAGCCACCTTTCTCAGTATTGAAAAATCAATAAGTTACCGACAGCCGAAAAAAAAGGGTCTGACAGCGAAAATCGACAATTGCAGGCTGAAATACAACGGGTTAGAGTCAACGGGCTACA # Right flank : ACGCCAGAGGAATCGATGGGGGAGAGTACAAAGGTAAAAAAATCCCCCGAGCGGAAACCGGCGGGGGACGAGGATTGACCAACGAAATTACTGTACAGCAGCGAAAGCGTCGGCGACGCGCTGAACGTTGCCGTGATTCAGACCTGCCATGCAAACCCGACCGCTGGCGATCAGATAAACGCCGAACTCTTCACGCAGGCGATCGACCTGTTCCGGGCTGAAACCGGTATAGCTGAACATGCCGCGCTGGGTCAGCAGGTAATCGAAATCACGTTCCGGCAGGGCCTTTTTCAATGTGTTAACCAGCGTTTGGCGCATTTCCTGGATGCGTACTCGCATGGCTTCCACTTCCGCTTTCCAACTGGCGTTGAGTGCCGCGTCGTTCAGTACCCGCGATACAATCTGTGCCCCGAAGTTCGGCGGGCTGGAGTAGTTACGGCGCACGGTAGCCTTCAATTGGCCCAGTACGCGGGCGGCGGCATCGCTGTCTTCGCACACGA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 3876682-3876469 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001857.1 Musicola paradisiaca NCPPB 2511 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3876681 29 100.0 32 ............................. CGCGCAGCTGGACATTGAGCGTCACAAACTGA 3876620 29 100.0 32 ............................. CGATACGGTAATCATATTTGATCCCCATTCTC 3876559 29 100.0 32 ............................. GTTTTCGGCGTAACCGGGATCGTGAATGTGAC 3876498 29 93.1 0 ............T...............A | G [3876481] ========== ====== ====== ====== ============================= ================================ ================== 4 29 98.3 32 GTGTTCCCCACACCCGTGGGGATAAACCG # Left flank : TTGTTTTTTCGTCAGCTGTTTGACGCGATATTCCCACTTCAGCGCGGCGGATCGATCATTGACGACGCAGTGATAGACCAGCGCCAGTGCTCCTTTTCCCCGCAATGAACGCGCCCCTTTTCCTGCCTGATGCTGCGCCAACCTGCGTGTGACGTCGGTGGTGATGCCGGTGTAAAGCTGGCCGCCGGTCGTGCGTAAAATATAGAGAAACCATAGGGTTGTCGATGTCGTCACAGGAATGCCCGCAGAGTGTGTTATCGGCACTATCTTACGGCCCCGACGTCTGAAGAAAAGCGGATTTCCGATGGGCTACGATAGCCTTGCCGTGGTAGCCGTAATGAGCGGCTCGCTACCGGTGCGTGGTGCGACGGACAATATTCGCGGTGCCGTATGACAGACGCTATAGTTATCAAAGCGTTACCGTTCTTTATCAGCCTGGAAAAATCGGTGAATTTTTGTGAGTATAAAAATAGATTTGAAAACAATAGGATATATTTAGC # Right flank : CGCTGTCCGTGCTCAATTTCCCTTTACCTGGATGCGGGTGTTTCCCCTATCCAGACGGTGGTCTTTTGAATGTGATAAAAATAACATTATTAATTCATTTTTGTTATTTTATAATCGATCTGTGTGATTATGAGAACATTGCTCACTGGGGCCGCCAGATAAGCTTTATCTGCGGGCGGCCATTGGGTTTGGCTGAATGGGTGGGAGTATTGCTGTATGACTGAATTAACTACCGTGGCGCAGCGTGCGCTGGGGCTGATGGACTTGACCACACTGAATGACGACGATACCGATGAAAAGGTGATTGCTCTGTGTCGTCAGGCCAGCAGCCCGGCGGGAAAAACCGCCGCCGTCTGCATTTATCCGCGTTTTGTGCCGCTGGCGCGTAAGACGCTGTGCGAGCAGGGAACGCCGGAGGTGCGTATTGCCACCGTCACTAATTTTCCGCACGGTAATGACGACATCGACGTCGCGCTGGCTGAAACCCGCGCCGCTATTGC # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACACCCGTGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 4132455-4131633 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001857.1 Musicola paradisiaca NCPPB 2511 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4132454 29 100.0 32 ............................. CGTACCGGCACCGACTCCACCGGCAGACGGAA 4132393 29 100.0 32 ............................. GATAAATAAGTAAAAACATGTTATTCCACAGG 4132332 29 100.0 32 ............................. GTAATGTTATGAGCGCCGCCGCCGATGCTGGT 4132271 29 100.0 32 ............................. TGTGTTTTGCTCATAGTATGATAGAATATCAG 4132210 29 100.0 32 ............................. TGAGGCGCTAGTCGAGAAGGCCGGGCGTGAAA 4132149 29 100.0 32 ............................. TGGGCGACTCAGGATAGTTTCTGGTGCGGCAA 4132088 29 100.0 32 ............................. TGTTCACGCGCATCTTCCACCCACTGACCGCC 4132027 29 100.0 32 ............................. ATTACATCGATCAGAATTTTGGCGGCAGCCGG 4131966 29 100.0 32 ............................. ATACGGAGCGCCCCACACAGGCGTCGTGCCGA 4131905 29 100.0 32 ............................. AGTGCTTGCACTATAAACAAACAGAATAGGCG 4131844 29 100.0 32 ............................. CCGTGATGATTGCGACATCACGGCTTTATTTT 4131783 29 100.0 32 ............................. TGTGACTCGTGGCCGAGATGTCGGATATCTCA 4131722 29 100.0 32 ............................. TAACGAAAGGGGCGTCAGATGTTAAAGAAACT 4131661 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTGATTGAGGACGTGCTGGCCGCCGGTGAGATAGAGCCGCCGCAGGCGCCGCCGGACGCGCAACCACCGGCCATTCCCGAACCGACGCCGTTTGGCGATGCCGGACACCGGGGGCATGGCGCATGAGCATGCTGGTGGTGGTCACGGAAAATGTACCGCCGCGTTTGCGCGGCCGACTGGCGGTCTGGCTGCTGGAGGTGCGTGCCGGGGTCTATGTGGGCGACACCTCGCGGCGGATTCGCGAAATGATCTGGCAGCAGGTGGTGGAACTGGCGGAACAAGGTAATGTGGTGATGGCCTGGGCCACCAATACTGAGTCCGGTTTCGAGTTCCAAACCTTCGGTGAAAACCGCCGGATGCCGGTGGATCTCGACGGACTGCGATTAGTCTCTTTTCACCCTGTTGAAAATCAGTGAGTTAGCGTTCTTTAACAACCGGGAAAAATCGGTGGAATTTTATTGCCTTTAAAATGCCTTATAAAACAGGTATATATTTTTAGA # Right flank : CCAAATTGATATATCAACAAAAGCCGCTAACGGTGTACCGAACTGCTGTTGCTGGCACAGCGTCAGTTTGGCGCGGCGTAACAACCATGACTGAATTGGCGTCTATTAGTTGCGGGCCCGGTTGGGGCTGTTCGCTTGTAATTCGCGGACAAACCTGTCTTTTGCGTAAGTGAAGTCTTGAACGGTTTTCTCTGTACCCCATCCGACCCGGCGTACCAATGAACCGAAAAAATTGTCGGGAATGCAGAAATCCGATTTATCTATGACCTCTGCATAAGGGCTGTCTATGCGAACCAGTAAGGAGAGAACCTGGGTGCGCTTAAGCGCATAGCCGCGTTGTCGACAAAAATCGGCAAGGGCTGTTTCGGTATAAAAGAAAATATGTTGGCCACAATCCGGGGCGAGATAATCCCAGTCTTTTCCCTGCTGCTCATAAAACTGTGTCGAGAACACAATGAGATCTGCGTTTGTAGCAAAGATTTCTTCAAGGGATTGCTGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //