Array 1 5308-6617 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEYJ01000003.1 Salmonella enterica isolate STY57, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5308 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 5369 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 5430 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 5491 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 5552 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 5613 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 5674 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 5735 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 5796 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 5857 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 5918 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 5979 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 6040 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 6102 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 6163 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 6224 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 6285 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 6346 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 6407 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 6468 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 6529 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 6590 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 22749-24713 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEYJ01000003.1 Salmonella enterica isolate STY57, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 22749 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 22810 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 22871 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 22932 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 22993 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 23054 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 23115 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 23177 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 23238 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 23299 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 23360 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 23421 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 23482 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 23543 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 23604 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 23665 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 23726 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 23787 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 23848 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 23909 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 23970 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 24032 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 24135 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 24196 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 24257 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 24318 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 24379 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 24440 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 24501 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 24562 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 24623 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 24684 29 96.6 0 A............................ | A [24710] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //