Array 1 37262-37717 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADAN01000003.1 Gardnerella vaginalis 5-1 51.contig00003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 37262 28 100.0 34 ............................ TAAAACCCATATGCCTGCGAGTGGCAATATCCGC 37324 28 100.0 33 ............................ TGTACGGTAAGCCAATCAACTCAGAAATTGAAC 37385 28 100.0 33 ............................ CGTAGCTTATGATCCCAACAACAAGCAATACTA 37446 28 100.0 33 ............................ CCAAACAAGAACAAGCTTGAGAGCAGAATCGTT 37507 28 100.0 33 ............................ CTGTGAAGCGTTTACAATGCGTGCTTCTATGAG 37568 28 100.0 33 ............................ CTCTGGAATTACAACCGTACGATATGAAACCTT 37629 28 100.0 33 ............................ TTGAAAGCGTACCAACTCCAACAGATGAAGAAA 37690 28 82.1 0 .....................C.CTG.G | ========== ====== ====== ====== ============================ ================================== ================== 8 28 97.8 33 GTCTTTCCCGCATACGCGGGGGTGATCC # Left flank : TTTATTCTTAATGAAATTATTGAGCTAACTGGTATTACATCCAGCATGCTTGAATCTTATGGTGTCAGATTAGATTTAGCATTAAAAGAATTTATTGATTTTGTCGAAAAATTACCTGTACTTGGATATAACGTACAATTTGATATGTCATTTTTAAATTCTGCTTTATCTTCATTAGATGAAAGATTTGATCATTCTCTTTCAATTAACAAAATTTTTGATATTTCTCGTTTTGTAAAGAAAGAAAAGAAATTTTTAAAAAACTACCAATTAAAAACAGTGCTGCACGAATACAACATTGCTGAATCTGTTCCACATAGAGCTCTTCTGGATGCTAGACTAACAGCGCATCTTGTTTTTAATTTGAAAGGATTGCTAAAATTTATTTCATAAAAATAAAATACTGATGTACTACTCTCTGTGATAGGTTGAATTTGAAAAGTAAATGGAATTTGACTATTGCTGTTATAAAAATGGCCATTTTATTGGGATTTTTAAGC # Right flank : GACCTGCCTGAGCGCTTAAAGCGTAGCGCGCGAAGGCAGGTCGTCGCACTGCGCTAGTAACGATAAATCGCAATTATTCGTTATTAACGCAGATTAGCTACTGCACCAGTAACATATGACCGTTATTTTCTCAGTCAAGTATCTGAGAAAGTAACGCTAATAAGCAAAACACTGTTAAAAACTCAGTCAAGTATCTGAGAAAGTAACGCAAATAAGCAAAACATCGTTAAAAACTCAGCTAACCAACTGAGAAAGTAACACTTGCGCTCGCAAATGCTCCAATCCATACGCATAACAAACATCCAACCAACACACGCAAACACCACCAAACGACACGCCAAATAGGCGAGGGCTTGCATTTGAGAATATTTCGGGTATAGTAGTTACTCGTGCTTCGGCGCTGACATTGTTCAGTAAAGTTGCATTGCGGACATAGCTTAGTTGGTAAAGCGCAACCTTGCCAAGGTTGAGACCGCGGGTTCGAGTCCCGTTGTCCGCTC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTTCCCGCATACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 336098-335612 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADAN01000003.1 Gardnerella vaginalis 5-1 51.contig00003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================ ================== 336097 37 100.0 27 ..................................... CAAGTCTATTTGAACGCGTCTTATTTG 336033 37 100.0 27 ..................................... GCAAAAGCAGGTTGCAGTGTTCACTAA 335969 37 100.0 27 ..................................... ACCATGATGCTTCCTGTGCCGTTGCCG 335905 37 100.0 27 ..................................... TGCGTTTGGGGTGAGCCTTTGTGGCTG 335841 37 100.0 28 ..................................... GAATCCTCTTGAATCACGTAGGCAAGCA 335776 37 97.3 27 ....................................G CACGTTTTTGCTATATACGCTGAAAAT 335712 37 100.0 27 ..................................... GTGTGCGGCTATTACTACGATGCTTGC 335648 37 97.3 0 ...................G................. | ========== ====== ====== ====== ===================================== ============================ ================== 8 37 99.3 27 CAATTATATCAAGAATGGTAGAAGCTAATTTTCAACT # Left flank : TAATGGTTCTGGACATACGATTCCTAGTGCCTTATCTGATTTAGCTCAATCATATGGTATTTATGTGGAAAAAGGCGTGGAAGAATTTCAAGTACCACAATTCGTAAGGAGTGGATTATGAAAGTCGATGAGGACAGTGGTGGCATGTGGTGTTTAGTAATGTTTGATTTACCAGTGAAAACAAAAGTGGAGCGTCATGCTGCAACTGTATTTCGCAATATGCTGCTTGATATGGGATATGCAATGGTGCAATTTTCTGTATATGTTCGTTATAGTCCCACTCAAACAGGAAATAGAACTTCAGTAAAAATAATTAAGGATAATCTTCCGCCGCGTGGATCTATACGCATTTTACATGTCAGTGATCATCAATGGTCATCTGCGCAACGTTATTACAATGCCAGGCAAGAAAAGAAAGAAGAAACCCCAGATATCGCTATGCTTTTTTAATCGTAAAAAGCTTTATAATAGTTGAAATTCTACCATTCTTGACGATATAC # Right flank : AATAAATAAAAACGGGGAAGCTGGGAAGCTTCCCCTGCAGTGATAATCATCAAAACTGCTGAGCAATCAAACTGGATAACAAGTCCAGTCTTATTGAAAATTAGCATTTCTAATATATCATTTTTAAGAAATAGAAAACAAGTGATTTTTTTTAAGTTTTGTTAAAAGATTTGAAAAAGTAATATATTGATATAATTAGTGGGTAGCGTAGTTGAAAATATTTTCACTTTACGTATGTGTGCGTTTTCTAAAAAATGTCTTCTAGGAATGTATGTGTAGGATTATAGGCTCAAAAGTGTGTAAAGCTAAGCTGATGAATATTCTGTGCATAAACCATAGCTTCAGCACCGTTACTAACTCAGTTATCTAACTGAGAAAGTAACGGTAATCACCCAAACACTGTTACTAACTCAGTCAGCAGGCTGAGAAAACAACGGTCATGCGTTACTAGTGCAGTAAGTAGACTGCGTTAATAACGAATAATTGAGATTTATCGTTAC # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAATTATATCAAGAATGGTAGAAGCTAATTTTCAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //