Array 1 57-818 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDTW01000027.1 Siminovitchia fortis strain DE0583 NODE_27_length_44225_cov_55.127191, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 57 36 86.1 30 CCAGG............................... ATGCTAGTTTTTCGTTCATCTCTTATCATC 123 36 100.0 30 .................................... TATACTCATTTACAAATTCAATACCCATAC 189 36 100.0 30 .................................... GTCAGTTCGTTTGTATTCGTAATATTAATC 255 36 100.0 30 .................................... CTAAGACGAGCGCTAACGTTAAATCTCCGA 321 36 100.0 30 .................................... CTAAGACGAGCGCTAACGTTAAATCTCCGA 387 36 100.0 30 .................................... ACGTAATTATCAATTTCCCGGAACGTCTGG 453 36 100.0 30 .................................... TAGAGCTTGGGTTTTACCGCATGATGAAGT 519 36 100.0 30 .................................... GGCATGAAGATATTCTCGTATTCTACAAAA 585 36 100.0 30 .................................... TTGGTTGTTTGATTTTAATTCGTTAATAAT 651 36 100.0 30 .................................... CTTTCCCCGTCCATGTTTTCTTCGGTTTTC 717 36 100.0 30 .................................... GACTGAATCACATCCCCCAGAGGCATTCCA 783 36 86.1 0 ..T..........C..G......A......A..... | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 97.7 30 ATCATATCACATCAAGATTTACAGGGGAATTATGGC # Left flank : TATACCAAAGGCTGGAGCCCTTTTTGTATTTAATAACTAGATTTTACTTTCGTAATC # Right flank : CGATAACTGTCAATTGGAGTTTCATCTCTTTTTTCTTGGAGGTAAGCTTGCCCCTTCAGTAACTGCTAAAACTGTCAAAAAAACCGTTCCGCCAGCGCACATTTTAATGATAAAATGGAACTAAATACTGGACCATGAGAAAGGGATAATATGGAAAAAGGATTAAAGTACAGCTCTACCATCAAGTCACGACCCTTCTTATACAAGGAGACCAAAATGCTGGCAGAACTGCATTTGAAGGGGTTGAATGAACTCGAATTGAAAGAGAAAGTTATCAGCCAAAATATCTTTCAAGTCAAAACTGAAACCCGCAAAAGAGAAATTGCTTCAGCCATAAAGGCACGTTTAAAAGTGCTGGATGATTACCTCATTAGGAAGCTTTTAACTACTGACATACATACAAGTAAATTGATCGTACTGTACGCTATCCTTAAAACGGACAGGCTGTTTTATGAATTTATGTATGAGGTTTTCAGTGAGAAAATTTCCGGGCGCGATTT # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCATATCACATCAAGATTTACAGGGGAATTATGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [5-5] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 17545-14409 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDTW01000068.1 Siminovitchia fortis strain DE0583 NODE_68_length_17645_cov_54.594528, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 17544 36 100.0 30 .................................... CTGCCGACAATGCTACGGATACCTGCGATA 17478 36 100.0 30 .................................... CGGCTTCATGCCCGTTTGCTCGTAATAGGA 17412 36 100.0 30 .................................... GGAGGCCCTTTACAATGAAAAAACTACTCT 17346 36 100.0 30 .................................... TAGGGAACTTGAGCAATACGAGGCGGAACT 17280 36 100.0 30 .................................... ACGATTTCTTTATCGGATTCCCACGGCGGA 17214 36 100.0 30 .................................... CATTAATCTTTGCTTTTCTTCCGGTGTTTT 17148 36 100.0 30 .................................... AATGCTAGTTATGTAACAACAGGTTTGTTA 17082 36 100.0 30 .................................... TTAGGCGGGAAGTTAGCGAGGTCATTAGAG 17016 36 100.0 30 .................................... GATAGCCTTTCTCATATTCGTGTTTTTCTG 16950 36 100.0 30 .................................... CGTAACAAAACACGCTTCTGTTACATTCGA 16884 36 100.0 30 .................................... AGCCGAAAGCCGAATAAGGCTTTTTTATTT 16818 36 100.0 30 .................................... TGTAATGAGGCCGATCAGGCATCACTTCCT 16752 36 100.0 29 .................................... TAAAGGTTCGAGGAAACATACTCGCCAAT 16687 36 100.0 30 .................................... CGGTTTTCAAACGGTACACCGGTGTACCAA 16621 36 100.0 30 .................................... CCTCTTGCGAATGTTCATCGGTCCAGTCCT 16555 36 100.0 30 .................................... GCAATTATGCTTAACACGGTTAAATTGCGC 16489 36 100.0 30 .................................... AAAAAATCCTTCGCAAGATGCTAGAGCTTT 16423 36 100.0 30 .................................... GGAAAGAGGATCAGAAGGACAAAAACTGTC 16357 36 100.0 30 .................................... TACTTTAATCGACCAAATCGCGCAGGTAAT 16291 36 100.0 30 .................................... CTTTCGTGGGGTTACAATCTCGCAGAATTA 16225 36 100.0 30 .................................... CGAAGCTAAGACGGTTAGGTGCGCTCATGT 16159 36 100.0 30 .................................... TGGCACGATGTCACATATCACACGATAGAA 16093 36 100.0 30 .................................... ATCATGTTGTATCGTTCTCCATCCGAAACC 16027 36 100.0 30 .................................... GTATAACTCGTTAACTCTTTCGTTGCAATA 15961 36 100.0 30 .................................... AATCAGTCGGAACAAACATCGTAAAAGATG 15895 36 100.0 30 .................................... CTCCTTTAGTTCCTGGAGCATAAAGGTAGG 15829 36 100.0 30 .................................... GCGCGCTTTAAAGAATACCGCCCCGACTAA 15763 36 100.0 30 .................................... CCTCCTTCGGGAAATAGTCCCTTCACCCCT 15697 36 100.0 30 .................................... TAATACGAAGGTGGAAGCGAAAGGATTAGG 15631 36 100.0 30 .................................... ATGCTGGATGAATTCGTGATCACGAAAAAC 15565 36 100.0 30 .................................... AATGTAAAAGGCATCTATTTAACGACTGGG 15499 36 100.0 30 .................................... CCGCTTTTGACACGTGTCGTCCAACCATAA 15433 36 100.0 30 .................................... GGATATTCGATGAAATCCATGAGTACAAGG 15367 36 100.0 30 .................................... TGCGGATTGGCTGAATGGTCTATCATGGAT 15301 36 100.0 30 .................................... AGGCGGATTGGAATATTCCTATTATCGAGT 15235 36 100.0 30 .................................... AATTGCAGGTGGGAAAGCTGGATTGACAGC 15169 36 100.0 30 .................................... ACAAGGGACAGGGAATGGTTTTATGAGGTG 15103 36 100.0 30 .................................... CCAATCCCACAAGGTGCGCCTGCCCTCGTT 15037 36 100.0 30 .................................... TGCAAGATAATCCATATCATAATTTTTTGC 14971 36 100.0 30 .................................... GAAAAAGAAAGTGGATCCACGTGAAGCTGG 14905 36 100.0 30 .................................... GGAACTTTCGGATTGAAGGTAAACCAGCGG 14839 36 100.0 30 .................................... GAAAATAGAATATGGGTATAAACTTTTTAC 14773 36 100.0 30 .................................... AAGAAGAGAAAGAGATTGTCCTACCCAGTG 14707 36 100.0 30 .................................... TTGAGAGCATCCAGGGAGATGATCTTGAAA 14641 36 100.0 30 .................................... TCCAGCAGTGGTATTAAAACAGCGTGGACA 14575 36 100.0 30 .................................... AGAGGATCCGAAGTTCCTATTAGGAAACTG 14509 36 100.0 29 .................................... TTGGTTGCAACGATGTAAACAAAAAGAGG 14444 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 48 36 100.0 30 GCCATAATTCCCCTGTAAATCTTGATGTGATATGAT # Left flank : TTCAGGTTTTTCACCGGAGTTAATTTGAAATTAGGTGTCTGAAATAATGTGCTAGTTTACAGTGATATGATTAATGCATCCACAATTGCGCTTGGTGATT # Right flank : ACATGGCCGCAAAACCCTTGATTCCTCCCCGTTTCAGGGGTTTTGTATTTCCAAAAAAGAAGGATTTATCCCTGGGATTTATCCGCTTTGTTTTATTTTTTATAGAAATAACTGTAAAAAAAATACCTGCAAAATAAATTGCAAGTACTCTTTAAAAGAAATCTACTTTTTTAACACCGAGTTCTTCTTCTGCTGTCGTTGTACCCAATAAAATCTCCATATTGGCAAATTGTTTCTCCGTTATTTTCATTGCTCGGATGGCCCCATTAACAGGGGGGAGATTCTCCTGCAATCTCTTCATATGTTTACGGACCGCATCCTCCCCATTGCAAATTCTTGTGTATACTGAATATTGAAGCATTGTATATCCGTCATTCAATAAAAACTTACGGAAACGAGAGTAGGCTTTTCTTTCCTTCGGAAGTACTACCGGCAAATCAAAGAAAACGATAATCCTCATGTATCTACTCATATGTATGTACGTTTAAATTGGTTAATTC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCATAATTCCCCTGTAAATCTTGATGTGATATGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 14525-13156 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDTW01000073.1 Siminovitchia fortis strain DE0583 NODE_73_length_14618_cov_56.899760, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 14524 32 100.0 34 ................................ CGACAGCTTCCGTAACGATTACCGTGTTTTTGAG 14458 32 100.0 33 ................................ TCGACTTGGAGGCGGCGGCTGGCTTCGAATCAA 14393 32 100.0 34 ................................ ACCTGTGACGGTGTTACGCAAGACTTCGATTTGC 14327 32 100.0 36 ................................ TTCCTTCGTTTCTTCCGTTTTTAACGACTCGTCAGT 14259 32 100.0 33 ................................ TACTCGAGCTACTAACGCATTCCACTGTGCTTC 14194 32 100.0 35 ................................ TGCTTGCCGTAGCCTATTCCGTATTTCGACTGCGT 14127 32 100.0 35 ................................ GTCTCGCAAAAGATATATCCGGAAACAAATATGGC 14060 32 100.0 36 ................................ GCTCTACCTATCGACGACCCGAAGAACGCGCATTGT 13992 32 100.0 35 ................................ CGTCTCATACACATAGTGTCAGCATCCCGTCGCAC 13925 32 100.0 35 ................................ TCCGGAAATGCTAACGTATATTCGGACGAGCACCT 13858 32 100.0 34 ................................ CCTCCAGTTCAATGTATTTGATTATGGTCATGCT 13792 32 100.0 34 ................................ AGAAAAATCCCGTTGACCGTATCTTTCGATTGCG 13726 32 100.0 35 ................................ CAGTTCTTCGGCTCCCACTTCATCGAGAATAACCC 13659 32 100.0 35 ................................ ATGATAATTACATCTTGGCTGGCGGCTCAATAGCA 13592 32 100.0 35 ................................ CCAATGGCGGCGGATGAGGTGATCATGGGAATCGG 13525 32 100.0 36 ................................ TTCAATCGACAGGTGCATGTCTTTCCACAGTTTCAT 13457 32 100.0 35 ................................ ACGGAAATCCTGCTTTGCTTTTTCACTCAAATCCC 13390 32 100.0 38 ................................ CAGAATATGAAAAGGCTACTAGAAAAATTTGGGTAATC 13320 32 93.8 35 ..........A......A.............. ATCTGAACGTAGTGGGATATAAAGGCGTGTTTGAC 13253 32 87.5 34 ..........C.A......T.......A.... GGTGTAAAGCCGGAGGTCATCGACGGTGCTTTTT 13187 32 75.0 0 .A....................TA...TTTTA | ========== ====== ====== ====== ================================ ====================================== ================== 21 32 97.9 35 GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT # Left flank : ATTTCAGGTTTTTCACCGGAGTTAATTTGAAATTAGGTGTCTGAAATAATGTGCTAGTTTACAACAGTCGGTCCGTACACAAAGTTTCCTAGC # Right flank : ATCAGTTTTTTTCTAAAATGAATCTTTTCCTCCCCTCACCCAGTATATATGTTTAGAATAATTTTTAAGGGGTGGCTGTAATGGGTATTTTATCAAGGTTTAAAGATATTATGTCGAGCAATATCAATGCATTATTGGACAAGGCGGAGAATCCGGAGAAAATGATCGATCAGTATATGAGAAACCTGAACAGTGATTTGGGCAAGGTGAAAGCTGAAACTGCTTCGGTTATGGCGGAGGAACAGCGGTCAAAACGGGCGCTCAATGAATGTTCGACAGAGATTGAAAAGATGCAGAATTACGCGGTCAAAGCCTTGGAAGCAGGAAATGATGATGATGCACGGAAGTTTTTAGAGAAGAAGGCCTCCCTGGCCGAAAAAGAAGCGGAATTGCAGCAGGCCTATAGTTTGGCAGCTTCCAATGCGGTCCGGATGAGGGAGATGCATGACAAGCTTGTTTCTGATATCGGCGAGCTGGAGGCACGCAGAACGATGATCAAA # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 6154-8654 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDTW01000091.1 Siminovitchia fortis strain DE0583 NODE_91_length_8727_cov_56.215259, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 6154 32 100.0 33 ................................ TTTTAATATTTCAACCTTAGTTTCAGTATCCCC 6219 32 100.0 35 ................................ ATTTCATAGAAACTCATACCCGTTGAAGTTATACC 6286 32 100.0 35 ................................ ATGTTAGCGACTTCAGACAACCTACAACCGGTTGA 6353 32 100.0 35 ................................ ACCATCTTGATCACCTCCTCCTGTGTGCAGGAATC 6420 32 100.0 35 ................................ TTGTCTACACCGAGTTTGCCTAGCACCCAGTTAAC 6487 32 100.0 35 ................................ TCAAACTCCTGCTCCATGCCTTCCAGGTCCTTGAT 6554 32 100.0 36 ................................ ACCTTTGAACTCGTTACCTTTTCTTGAACCCTGACC 6622 32 100.0 39 ................................ TTTCTCAAGGACGATCCAATAGGCGCATCCATAATGCCA 6693 32 100.0 36 ................................ ATTAGCAATATATTTTGGCATGATTTTGCCCTCCTT 6761 32 100.0 35 ................................ TACTACTGTCATAACCGCGCCGAACCCCGAAATAA 6828 32 100.0 36 ................................ CTCGTCAGTAAAACGTATTGCGAATACAACTTTATC 6896 32 100.0 34 ................................ ACAAAAATTCACGCAGATCTTATGGAGTACAGCC 6962 32 100.0 34 ................................ AAAATATTGACGAGATGCTTACTTCGAACGGACT 7028 32 100.0 35 ................................ ACCGACACGCTCGCGAAAATTTGGCAGACGGTACG 7095 32 100.0 34 ................................ CTCGCCGAGTGGTCGGTGCCGAAAGTAACCTATC 7161 32 100.0 34 ................................ TTCTAATTCGATAGTAGAGCCGATGGGGTTACGA 7227 32 100.0 35 ................................ AACTCGGCAATCGGGAAGGCAATAAGCCTCCGCAG 7294 32 100.0 34 ................................ TTCGTAATCCCCGTCGTGGAATTTATCGATTGCT 7360 32 100.0 33 ................................ CGTTACATATCGGCGCGAGCTTTCATTCCAAGC 7425 32 100.0 35 ................................ TATCCTTGAAATCTACGAGCCCTACAGAAATATGT 7492 32 100.0 34 ................................ CAAGAAGACGGTGATCCTGTACTTAAGTTTTTAC 7558 32 100.0 34 ................................ ATACTTGAGTTTTCATTGATGGACTTAAGGTAGT 7624 32 100.0 36 ................................ TATACGAGATTGGGCGTGATTTTCGAGAGTGGTTAG 7692 32 100.0 35 ................................ AAGGATGAAATCTACAACTAGAAAGGGGTAAAAGC 7759 32 100.0 36 ................................ CTGGTGTAGTGTAATTTCGAAAAACAGCCCTACCAT 7827 32 100.0 35 ................................ TTTGATTTTCTTGTTGTCATCTTGCAGTTGCTGAA 7894 32 100.0 34 ................................ TCTGACGTAGAGCCCCACCGTCATAAGCCAAACC 7960 32 100.0 36 ................................ CAAACGTTACTATTTCGTCGCCCCACAACACGTCCT 8028 32 100.0 34 ................................ CTTCCGGCTCATATTCGTAAACCGCTCCGATAAG 8094 32 100.0 33 ................................ GCTAATCCTTCGCCAGTCCAGCGTCCGATTTGA 8159 32 100.0 34 ................................ GTTAGAACACTCAATCTATTCAGCCCTTTTAATT 8225 32 100.0 34 ................................ AACCATCATTATTTGGTTAAAGAACTCACTCCCG 8291 32 100.0 34 ................................ TTCGGAAAACTGGAACAACGCCAGTCCGTCGGTT 8357 32 100.0 35 ................................ AATTTCGATGCGTCGAGGCTTTCAAACGGAATCAT 8424 32 100.0 35 ................................ CTTTTCGACATCTACCAAAGAGTCCTCAACTTCGA 8491 32 100.0 34 ................................ ATAGCGCCGTGTATTGCGTGTGACTTCGCGCTTG 8557 32 100.0 34 ................................ ACGTACCGATAATTTAAGTCCTCTGTTAGCTTTT 8623 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================= ================== 38 32 100.0 35 GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT # Left flank : TGAATATCCACCATTTTTTTGGAAGTAGGTGAAAGAGTGCTTGTGTTAATAACATATGACGTCAGTACCACTACTCCGGAAGGTAGAAAAAGACTTAGGAAAGTCTCCAAGAAGTGTTTAGATTATGGACAAAGGGTTCAGAATTCCGTATTTGAATGTGTTTTGGATTCTACGCAACTTAAACAATTGAAATATCAATTAGAGGAAATTATTGATAAAGAAACCGATAGCTTAAGATTTTATAACTTGGGGAAAAACTATAAAGGCAAGGTAGATCATATAGGAGCGAAGGAATCTTACGATATAGAAGGAACACTTATTATTTAATTATGGTGCGAATATACAGCTCTCATACTTTTTCGTGGGGATTCGCACCCGAAATATCTTGGATTTGATAACGAATTTCCAGATAACTTCAAATGTATTCCTTTTTATGGGAATAAATAGCGAGTTTATGTGATTATTACCCTTTTTTTGGATAAAAACTCACTGATTTCGCT # Right flank : TCGACAGTCGTGTAAAGAATCACTTTGTTCCGTCAAAAACAGGCCTTCTTTATTCAAATTCCTTCAGCGTGAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.70,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 104-931 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDTW01000152.1 Siminovitchia fortis strain DE0583 NODE_152_length_991_cov_56.020474, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 104 36 100.0 30 .................................... AGCACGTTACAACAGACTTCAAAAAGTTTT 170 36 100.0 30 .................................... CTGCTATTTCATCATCGGTAACGCGCTTTT 236 36 100.0 30 .................................... AGTCATTAGTACGCAAATATACGGTAAAAG 302 36 100.0 30 .................................... CGGATTCGCTTCTCCTACGATGTTCTTAGA 368 36 100.0 30 .................................... CTTTCACCTTCCAAACCTACATTAGTAGAC 434 36 100.0 30 .................................... CAGCGGTTAAACTGCCCCTTTATAAATGCT 500 36 100.0 30 .................................... TGCAGGTTTTTAGCGGCCTTTTCACTGGCG 566 36 100.0 30 .................................... CATCTTGCCCCAGAACATCAGTTGCACATA 632 36 100.0 30 .................................... GCGACTTGAATCCGGTCGTTACGGTAGACC 698 36 100.0 30 .................................... GTGATTACCTCGTTGGATAAGCGCATTATA 764 36 100.0 30 .................................... TGATACTGTGTTAGGTGAGGTGGCTGTCGT 830 36 100.0 30 .................................... ACTGACTTTGTTGGGGTAGTTAATAAGACT 896 36 94.4 0 .................................TG. | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 99.6 30 GCCATAATTCCCCTGTAAATCTTGATGTGATATGAT # Left flank : ATCACGCTGAAGGAATTTGAATAAAGAAGGCCCTTTTTTGACGGAACAAAGTGATTCTTTACAGTGATATGATAACGAAGGTAACATTTCAACAGTGACGCAAG # Right flank : AAAGAATCACTTTGTTCCGTCAAAAATAGGCCTTCTTTATTCAAATTCCTCCGGCGTGAT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCATAATTCCCCTGTAAATCTTGATGTGATATGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 559-60 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDTW01000165.1 Siminovitchia fortis strain DE0583 NODE_165_length_661_cov_52.501672, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 558 36 100.0 30 .................................... GAAAAGTTATATGAGGAATTTAAAAAAGAG 492 36 100.0 30 .................................... CATGCTTTGCGGGATTGATGCGGCAACGCT 426 36 100.0 30 .................................... TCTGCAAAGTCTTGGACAGCCGCCTGCAGC 360 36 100.0 31 .................................... CCAACGCGGACAAGCGCCTTTTTAAGTTCAG 293 36 100.0 30 .................................... GGGCACTCCTGCTATCTCCTACTCTCATTA 227 36 100.0 30 .................................... TCGGGGATCCGGATGCTCTTTTAAAATATG 161 36 100.0 30 .................................... GTTTAAAGGGAAGATAGTTACATCTGTCCC 95 36 94.4 0 .................................TG. | ========== ====== ====== ====== ==================================== =============================== ================== 8 36 99.3 30 GCCATAATTCCCCTGTAAATCTTGATGTGATATGAT # Left flank : TTGTAAATTGTTCCCAAAAGAGCGCTGAATTAGTTTTCGGCAAATTTACTTTCGTAATTTGGGGTGATATGATAATGCTCACGAGTAGAACCTTTTTCTCCA # Right flank : TAAACTAGCACATTATTTCAGACACCTAATTTCAAATTAACTCCGGTGAAAAACCTGAAA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCATAATTCCCCTGTAAATCTTGATGTGATATGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //