Array 1 16554-22648 **** Predicted by CRISPRDetect 2.4 *** >NZ_VMOL01000014.1 Vibrio cholerae strain EL2403 contig14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 16554 28 100.0 33 ............................ AGTATCAGAGGTTTCCGTTTTATCCGGTTCCTG 16615 28 100.0 32 ............................ AGTAATACCCGTGATTATGGGAAGTAAAAATA 16675 28 100.0 33 ............................ AAAAGAAAAGACATGGCACAGTGAGAAGTATTT 16736 28 100.0 32 ............................ ATGCTGCGTTTATCATCTGAGAGAGAATTTTG 16796 28 100.0 32 ............................ TTCCGGTTTGGATGAGGAACGCCAGTCCATGT 16856 28 100.0 32 ............................ TTGAGGATAATCCTGATATTATCGGCTCTGAG 16916 28 100.0 32 ............................ TACAGGTGAGCTAACCGCATTCTGCGGTCATC 16976 28 100.0 32 ............................ AATGCAAGAGCATGAAAAGGGTGATTATCTTC 17036 28 100.0 32 ............................ TGAAAAAGAACGGATGTATTTATCGCTAAAGC 17096 28 100.0 32 ............................ TTCCGTCTACGTCCTTGAGGCTATGGAATAAG 17156 28 100.0 32 ............................ TTTGTCTGTAGATAGGGTAGTGAGGTTTTTGT 17216 28 100.0 32 ............................ TACTCTCGATCTCGGTGCGATTGTGGGTATGT 17276 28 100.0 32 ............................ TCGTTGAAGAAATGGCTCGTGATGCATGCCCA 17336 28 100.0 32 ............................ TGCGCTGTTTTCACCCATTCAGTGAGCGTGGT 17396 28 100.0 32 ............................ AGATGGATGGCTTATTAAAACAAACACTGTGA 17456 28 100.0 32 ............................ ACTAGAAACGAAGATAGATCAATGAGCGTTTG 17516 28 100.0 32 ............................ ATTGAGACGCTATCAGAACCAGATCTTGAACT 17576 28 100.0 32 ............................ AGATGGATGGCTTATTAAAACAAACACTGTGA 17636 28 100.0 32 ............................ TGTTTTAGAAATAACAAAGCTCATTTGTGCAT 17696 28 100.0 32 ............................ ACGCTAACTGCTGCGATGGAATGGGCGCCGCT 17756 28 100.0 32 ............................ GCATCATCATGGGATGAAAGTGAGTTAAGGAA 17816 28 100.0 32 ............................ ATCTGAGAGATAAGGATGAATTTCCACTTTGC 17876 28 100.0 32 ............................ ATAAGGTTAAAAAGCTAGGAGATTACCGTGGA 17936 28 100.0 33 ............................ ATACTCCAGTTGATATTACTAAGCTTTTACCGT 17997 28 100.0 32 ............................ TCACAGGCAGGAAGTTTTCCGACCATGAATTG 18057 28 100.0 33 ............................ CAGCAATGTGAATTTGTGCTTACTCAGTCAATG 18118 28 100.0 32 ............................ AAGCCGCGGAAATCTTTGGGTAAGAAAGCTTA 18178 28 100.0 32 ............................ GCTTACATCGATGTTGATACGCAGTCTGGTGA 18238 28 100.0 32 ............................ CGTTTCATGCTCTTGCATTGGAAGCATTAGAG 18298 28 100.0 32 ............................ TCCAAAGGCTGCATACCTTCGATGTTGGTTAC 18358 28 100.0 32 ............................ CTTCCTGACGAAATACGTTATTACGCTTTTAT 18418 28 100.0 32 ............................ AGGCATTGGCTCTGGTGTCGATTTCGGTGAGC 18478 28 100.0 32 ............................ ATTAAAAGCGCCTGACTCCCGAAGCGCTTGGT 18538 28 100.0 32 ............................ ATGGCGAAGTTGAATCCTTTTTAGAGCTACTT 18598 28 100.0 32 ............................ AGTAGAAGAAGCAGCAAAACTTTGTTTTAAGA 18658 28 100.0 32 ............................ GACTCGCTCTACAAGTGAGCCGACTCTAAATG 18718 28 100.0 32 ............................ AAATCAGAAACTGCTGCTCTATAACTGCCAAT 18778 28 100.0 32 ............................ TACCAGAAAGGAAGCTGAGGACTACTGGGAGA 18838 28 100.0 32 ............................ ATTAGGCGACCACGTTACGCCGTTGTCCGTTG 18898 28 100.0 32 ............................ TCAGCAAAGCAACAGCGGATGAGCTCAAAAAA 18958 28 100.0 32 ............................ TATTCAAAGACCGCAATAAGGCGCACGAAGCT 19018 28 100.0 32 ............................ TTACGGTGGTTAGAAATCGGTTTAAAAAATAT 19078 28 100.0 32 ............................ TTACAGCGAAGTCGCTTTCTGTCGAACTGAAT 19138 28 100.0 32 ............................ TACATCACGGTGTACATCGACGGCCTTGCCGC 19198 28 100.0 32 ............................ ACTAACCACTCTTGCATGGTGCGCATGCGCTC 19258 28 100.0 32 ............................ GCATAGTGCAGGTCTCGCTCTTCCATTTCTTC 19318 28 100.0 32 ............................ CGAAAGTGCGCATCAAAGTGCCAGAGCCAGAA 19378 28 100.0 32 ............................ ACCACTTGATTCAGGATTCGTTCATCTCGCTG 19438 28 100.0 32 ............................ TTGCAGCACAAGGCTTACAGAGGGGTGCTGCT 19498 28 100.0 33 ............................ AGGTGGGGAAGAGGTAAATTAAGTAATTTTTAT 19559 28 100.0 32 ............................ ACGCGGCGTTTTTCCTGCTTGCCGTTATGTTT 19619 28 100.0 32 ............................ AATGGCTAGCGGCTCCCACTCGGTCTTTTCTT 19679 28 100.0 32 ............................ TTTAGAAACCAGTTCGCCATTGAAACCTAGCC 19739 28 100.0 32 ............................ ATAAGAGAAATCACTAACGCGGCCAATGTTAT 19799 28 100.0 33 ............................ GTTACCCAGAAGCTTTCTGTTTTCATTTGTCCT 19860 28 100.0 32 ............................ CGGTCATGAGCGAGGCAACCGCTATTCCAATG 19920 28 100.0 32 ............................ AGCAGAAACCGTGATTGCTTGGCTATCGACTC 19980 28 100.0 32 ............................ AACAATCTGGAGAATATTCCTATGGCTAACAC 20040 28 100.0 32 ............................ GAATAGGTGCCGTGAGGATAGTGGTTCTGAAA 20100 28 100.0 32 ............................ ATGACTAGAGATGTATTCGTTTCTAAAATCTT 20160 28 100.0 32 ............................ ACTGCTCTTTAATCCAAGAATTATCACCATCG 20220 28 100.0 32 ............................ GCTTGTCGGCTCCACGCCGTGTAATTTTTCAA 20280 28 100.0 32 ............................ TTCAGCCTCTTCAATGGCCGTGTATAGACGCA 20340 28 100.0 32 ............................ TGGTCAAAGATGGTAACGCCTATGTAATCAAG 20400 28 100.0 32 ............................ ACGTTACTCAAGTCCGCGCGTCAGTTACTCCT 20460 28 100.0 32 ............................ ATCAATCCACAGCTTCAGGTAGGTAACTTCAA 20520 28 96.4 32 ...........T................ GTAATGGCCGTGCATTGAATAGAATTCAAGTA 20580 28 96.4 32 ...........T................ GTTAAATGGCGCTAAGATTGAGATGCTAAATA 20640 28 96.4 32 ...........T................ CCCCCGTGGGCAGTGAAGCTGTGGTAATGGCG 20700 28 96.4 32 ...........T................ ACTCTCGCCTGACGTATTGGAAACGAAAATAA 20760 28 96.4 32 ...........T................ AGCAACGCAAACAATAACAACGGAGCAGGTCA 20820 28 96.4 32 ...........T................ TTCTTGTAGTAATCAATGGTTAGCGGTGAGCT 20880 28 96.4 32 ...........T................ AGCAGAAAAGGAGGCAATCAGTTCAGCGAAAG 20940 28 96.4 32 ...........T................ GAAGCTTTGAAGCTTATGGGCTGGCAGTCCTC 21000 28 96.4 32 ...........T................ TAGTCGGCAGGGATGCCCCCACTGGCAGAAAT 21060 28 96.4 32 ...........T................ TGTCTCTGGCACTCGCCAACCCACCACGGTGT 21120 28 96.4 32 ...........T................ TGACCCATGGCGATGGCGAGGTGTTCACGCAT 21180 28 96.4 32 ...........T................ CCAAGAACTCACGATTACAGCAATAAACACCA 21240 28 96.4 32 ...........T................ GTTACTAGGGCGCGGCCTACCATAGAATAAAT 21300 28 96.4 32 ...........T................ TTGCGTTTCAAGTCATCCAATTGGAATTGAAC 21360 28 96.4 32 ...........T................ ATTTTTGCGGTGAGCAACACGGTGAAGATTTT 21420 28 96.4 32 ...........T................ AAGAGTGCGCTTAATAAGAGCAAGTCGAGCTC 21480 28 96.4 32 ...........T................ TATAAACGGACAGCAGATTTTTATGCTGAATA 21540 28 96.4 32 ...........T................ AAAATCGATGCGTCCCACCCACACCACCAAAA 21600 28 96.4 32 ...........T................ GTGTTTAACGACCTGACCGGTGCTGTTGTGCC 21660 28 96.4 32 ...........T................ CAATAGAGCTGCATCCTGGTCATGCTACATTT 21720 28 96.4 32 ...........T................ GTCCACCAGCATAACTCGTGAAGTGATGGTTT 21780 28 96.4 33 ...........T................ ATACGGCTAGAGCTTGGCGATATCGAGTGCGAT 21841 28 96.4 32 ...........T................ AGACGGCCATTCCACTGCAGTTTGAAAAGTAC 21901 28 96.4 32 ...........T................ TAGGAGAATGACATGACATTAGGTACAGAATC 21961 28 96.4 32 ...........T................ AAGAGTCGCTTGAACCATCAATTTTGTAATTG 22021 28 96.4 32 ...........T................ CCAATATCGTACCAGAGCAAAGTTCCTTGAAG 22081 28 96.4 32 ...........T................ TTCGAGCGGCTTGCCCGTTTGCGCGTTCATGC 22141 28 96.4 32 ...........T................ TTTCCATCCAGTTGCAAGCTCAAACTGCTTTT 22201 28 96.4 32 ...........T................ AGTATAGCCAGTAGGGAACTCTGAGACTGCAA 22261 28 96.4 32 ...........T................ AATCTCTAACAGCGTTCAGGTAAGTCGGGGCT 22321 28 96.4 32 ...........T................ GTCCGGGGTTCGGTAGTAAGTCGACCCGATGT 22381 28 96.4 32 ...........T................ ATCAAATCTTTTATCATTTGCTAGTACGAACA 22441 28 92.9 32 ...........T.....T.......... AATTGGGGGTAATGGGCTAGTAGGGTCATTGG 22501 28 96.4 32 ...........T................ TTTTTCTCATAAGTGCGGATGTAGCGTTCAGC 22561 28 100.0 32 ............................ GCACTGGTTGCAGTGGAATTGCAGCTCGTGCT 22621 28 89.3 0 ...........T.............TT. | ========== ====== ====== ====== ============================ ================================= ================== 102 28 98.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTGACTTACGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGCACTATGGGCTGCAAAATCCGGCAAACCGCTGGTGGAATGTTTAGTGGATTTACAACAAAGCAAGCCGACAGCGTTGTGCACCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCTGCGAACCCCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTCAGATGCAGCAGCAAAGCACATCACAAGATGGGAGCTTTGATTGCTATGGCTTGAGTAGCAAAGCGAATGGACAGTCAATATCGGCGACCGTACCGCACTTTTAAATTGAACGAAAAAGGGTAATTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTGTTAAAACAAATAGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGAAGATTTTTATCCTAACATCCTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : AGAAAGTAAATCAAACGAGGCAGTTCACTTTCTAGATTACGTTAAGGTTCTTACGTTCTGCTACGCATGTTTATTAGGGTTTTCTTAAATGGTCTTTTCACAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGCTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATTGTTGGTTGTGTTAATATCAGATCCAAGCATATCGATCGAACATGTCAGATGGTCTCGTAAGTCAAATTTTACTCAGAGCGAGTTTTGCGTCAATAAAAATCCTTTTAAAATCATAAAGTAATGAGCTATTGGATTACATCAGTTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGCTCGCTCCACCAGCACATCATTGGTTTTCTGCGCTCAAGGTAGTCAGTGCGGTTATAGGCACTGCGGACCTGATTAT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //