Array 1 535946-537057 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGINR010000001.1 Streptomyces cinnamonensis strain DSM 40803 Ga0451095_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================= ================== 535946 29 100.0 32 ............................. TTCCACCATGCCGTCGCCAGCGTCCTTGATCT 536007 29 100.0 32 ............................. ATCGTGCCCTCGCTCAACAAGGCCGCGGAACA 536068 29 100.0 32 ............................. GGGACGCGGCCCTTCGAGCCGCGGGCGGACTT 536129 29 100.0 32 ............................. GCCGGCACTCTCCGCACGAACCGCACCGGCAA 536190 29 100.0 32 ............................. TCATCCAGATGGCCCGCAAGTGCGGCATCAAG 536251 29 100.0 32 ............................. CACGCACAAGGAGGAAGGAAGCGGCGTGAAAG 536312 29 100.0 32 ............................. TCGACGGGCTGCGGGCCGACTCGCTGGCCGGG 536373 29 100.0 32 ............................. GCGTACGTCGGCTGCACGCTCTCGGGGAGCTG 536434 29 100.0 38 ............................. TTGGCGTGTGCGGTGCGGCGCTGGGCCTGCTCCTGCTC 536501 29 100.0 32 ............................. GGTACCGCCACCATTGCGCCGGAGGCATTCCG 536562 29 100.0 32 ............................. AGACATCATGCGCCTCGCTTCATCTCAGGAAT 536623 29 96.6 32 ..............T.............. CCCTCTGCGGGCCCGAGCACCGCGTCGCGCTG 536684 29 100.0 73 ............................. TACAGCGGGCGGATGGTCCGTACGAGGTGCAGCCGCCCCCCGCACCGTCAGTGGCAGGCGCTACCGTTGCCGT 536786 29 93.1 32 G............T............... TGCTGCAGGGACTTCTCGCCGGCCTCGGAGTT 536847 29 96.6 32 ............................T GGTGAGCGTGGCTTGCCTGACCGGCTGCGTCG 536908 29 96.6 32 ............T................ GTCATCGTCCCCGACGGACTGCTGATCCCGGA 536969 29 96.6 32 ................T............ ACCGGGTGACGGATCCGGCCCGTGTTCATGAC 537030 28 82.8 0 ....A................T.A.-..T | ========== ====== ====== ====== ============================= ========================================================================= ================== 18 29 97.9 35 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : ATCGTCACCCTCCAGTCAGACCGAGAGGTGACCGTTCCCGCTGGCCGCAACTACGCCGAAGCGGTGACCTGGTGACAGTCATCGTCCTCACTCACTGCCCGCCCGGCCTGCGGGGATTCCTGACCCGCTGGCTCCTGGAGATCTCTCCGGGAGTCTTCATCGGAGGCCCGTCGGCGCGCATCAGGTCAGTGCTGTGGCAAGAGGTGAAGCAGTACGCGGGAAACGGGCGTGCCCTCCTGGCGTACAGCTCGGACAACGAACAGGGATTCGCGTTCGAGACGCACGACCACAAATGGCACCCGGTCGACCGTGAGGGAGTCACCTTGATCCACCGCCCCAGCGCCCCCACCGCACAGATGCCACCACCGTCCTCAGGCTGGAGCAAGGCCTCCAAACGCCGACGGTTCGGAACACGTTGAATGCATTTGAGCTCTATGTCTAAATATCAAGAAGTAGTTCGTGGCGGCCTTCACACCGACTAAAACCTCAGGTCAGGAAGT # Right flank : TGGCCGGGCCCAGCCAGAGGTGCTTTCCTGGGGATGCCCGGTGCCAACGGACCTACCCTTCACACCAGCGGGGGCTGGAGTGAGTTGGTACCCGGCGGACGCTGCCGCTGCCAGAATCTCGGAGGGCTGACAGCCTGAGCTCTCGTAGCTATTGGGTGAGTCTGGTGGGCGGAAGGCAAACTTCGGTCACTTCCTCGGCCCGGTTTCGCAGGAGCGGGGCCAATTCGACGTACCAGCCACGGCCCACGGCCTGAAGCATTTCGGCGAGGGCGATCTGTTCGCCGATCCGGCCGGCGGGGGTGTCGAGGACGTGGGCGAACTCGGCACGGATGCGGTCGGCGACGGCGGGGACGCGGAGGCTGTTCACGTACAGCATTGCGGGGTCGTAGCCGACGGGGACGGCGCCCCAGCGCTCCCAGTCCAGGATGACGAGGGGGTCGTGGGTGAGGTTGGCCCACTGGAGGTCGGCGTGCCCGGTGACGCGTTCGGTGATGGCCGGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 543447-543718 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGINR010000001.1 Streptomyces cinnamonensis strain DSM 40803 Ga0451095_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 543447 29 100.0 32 ............................. CTGAAGGACCGGATCACTCTCTGCCCCGACTT 543508 29 86.2 32 ...T..T.......T.....G........ ATGTCGCCGATGGTCACCTCGCCGGAGTTGGC 543569 29 93.1 32 .....T..............G........ ATCACCCGTGCCGCGGACCTTGCCCAGATCGG 543630 28 93.1 32 .....-..............G........ CTGCGTGAGGCGACCATGACCACACCTGACTT 543690 29 96.6 0 ....................G........ | ========== ====== ====== ====== ============================= ================================ ================== 5 29 93.8 32 CTGCTCCCCGCACCCGCGGGTATGGTCCC # Left flank : TCCGAGGGACTGGCGTCGATCAGACCGATGGCAAGGGCACGGCTGATGGCCAAGCGGTTGGAGCCCCACCGGTCCCTCGCCCCGGTAGGCGCGCTACTGGAGCGCGCGAAGGGCTAGCGGGTGGCCCGGTTGATCCAGTCCAGGTACTCGGCACGGCCGGCGTCGATCGTGAACGCGATGACCTCAGGCGAGTCATAGGGGTGGTTGTCCACCAGATGCTTCTCCAGTGCCTCGCGCCGGTCACCGGTCGTACGAAACGTCACCTGATACTCGATGCCCTCGCAGACCTCCCCGAGATGGCGGTACGTCGTTTCAATGGGCCCGGTCACCTGCCCGGAAGCGGCTAGGCTCGCCTCCACCGCCGAGCGCGACAACTTACGCGCAGCATCCTGATTGTCCACGGTCGTGATTACGATCAAGAAGTCAGCCATAGGGGCAACGTACCCACCCAACCAGTCGCACTCATATAGGAGGCAGTGAGACTTTGGGAGCACCGGCAC # Right flank : CGACACTGGCCCTTCGCCTGGGTCATGGCCGCGCTTTGACTCCTACCGTTCCGAGCCGTCCCGGTCTTCCCCAGCGCCCTCGTCGCTGTCTCCGAAGATGGGACGAAGTACCTCTCACAGGTCGAGGTCGAGGCGCTGAGCGGGGATGGACAGAGACCGCTGGACTTCACTGCTGACGTTGGTCGCCGTCGCTCGCCACTCCGCGACGAAGGGGTCGGCTTCCTGGCTGCTGTAGACCGTGATCGGATCCAGCGTCACGGTCTCATGGGGACGAAGGTCCACCGGAACGAAGCGGATGAGGGTGCGGTCCTCCTGCTGCTCGATGTCTGGGGAATGCAGGGACGGCAGCTGGTAGGCCGGCGGCTGCACCCCGAGCATCCTCCGGTAGCCGCCGAGGGCGGGGATGGTGCCCGCTCCGTATTTGGCTGGCTGGGAAGGCCAGTCGATCTCTTCGTCTGTGTCGGCCGTGACATGCGCCGAAACGGTGTCGGGGAGGCTCA # Questionable array : NO Score: 3.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGTATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.30,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [4-3] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 548975-551273 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGINR010000001.1 Streptomyces cinnamonensis strain DSM 40803 Ga0451095_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================= ================== 548975 29 89.7 32 G..........CG................ TACGTGCAGGACACCCCCGGCAGCGACATCGG 549036 29 100.0 32 ............................. TTTCCGGAGGCGACGCGGTTGGTGACGAACAC 549097 29 96.6 33 .......G..................... ACCTGCAGCACCGCGAGCACCTGCAAGTCCTGC GA [549118] 549161 28 96.6 32 .................-........... GCCGGCCGCCCCCTCCGCGGCGAATGCGGAAG 549221 29 96.6 32 ....................A........ CTGAGCTCCAGCTCCGGCGCGTCCGTGACGAA 549282 29 96.6 32 ................T............ GTCCCGTCCGCCTCCGGGCCGCTCGCGCTGCC 549343 29 96.6 32 .............T............... GCCGGCACCGGGTACGAGGACTTGAGGCGGGA 549404 29 100.0 29 ............................. CTCCGGGTCTCGATTCCCGCCGTCTCGGC 549462 29 79.3 32 GA...G.T.C..............C.... TCCAGCCCGACGAAAGGGGAAGCCATGCTGCA 549523 29 93.1 32 ...T................C........ CAGTAGGAGCCGGTTTCCGGCGCCGTTCGGCC 549584 29 100.0 32 ............................. TCGACCTGACCCGCCGCCGGGAACTGCTCGTC 549645 29 100.0 32 ............................. TCTGCCCCCGGGGCTGCGGCTACGCTGGAGCC G [549662] 549707 29 100.0 32 ............................. AAGCTCCTGCCGTCGATCGGGCGGTTCAGCGG 549768 29 96.6 32 ..............T.............. GGGCAGGAGGAGTCGGCATCCAGGTCCAGGAA 549829 29 96.6 33 ........T.................... ATCGGGCACCTGGCCGTGTTCGATGCGCCTTCG 549891 29 100.0 32 ............................. TGGCTCGGCGCGATCCCCGGTCACCTCTACAA 549952 29 96.6 32 ..............G.............. GCCGCTGCCCAGACGAGGATCGGGCCCGTCAG 550013 29 93.1 32 ............T....A........... CACGTGCCCTGGCCGCCGCCGACGTTCATGCT 550074 27 86.2 30 ...........-...A.-..........A CCGCGGCTGGCGGAGAAGTCGGTGCCGTGG 550131 28 89.7 32 .....-...........A......C.... GCCCTCAAGGCCGGCGGATCCCTGGCCGAGGC 550191 29 89.7 32 ................T....T.T..... ATCGCAGCCCCGCTGGATCAGCTTCGCCCCTG 550252 29 96.6 32 ..............T.............. GAGACCGGCATGCACGACATCAGGAACATCTT 550313 29 96.6 32 ......................C...... AAGGCCACCGTGCGGTACGCGTGGGGCCGCCC 550374 28 93.1 31 T....-....................... GTCCCGAGGTGGCATCGGACTGCCTGGTGCC 550433 29 100.0 32 ............................. TACCTGGCGAACCTGCGGCCGGACGGCTCGGG 550494 28 96.6 32 .......................-..... GCCTTCTGCACCGCCCGGTCCAGGCCGTCCCC 550554 29 93.1 29 ................T........C... GCCACCGGCGGCGGTGGTTAGAGCGGCTG 550612 29 93.1 32 ......T.......T.............. ACCAAGGGCAAGTTGGTCACGATCGAGGCGCT 550673 29 93.1 32 TC........................... TGCGGGGCGCCAACGTGGTTCAGCACGTGCGG 550734 29 100.0 32 ............................. GCGGTCGTGATGCCGGTGACCGTGCCAGCCGT 550795 29 93.1 32 ......A.................A.... TTCTGGGGCCGGATCCAGATCGGCCCGGACGT G [550810] 550857 28 89.7 32 ........T.A......-........... ATGCCGGTTCGCGCGGCGGACGACGCCTGCGT 550917 29 93.1 32 T.............T.............. ACCGACCTGTCGCTGGACCTTGCGGGCGCGCC 550978 29 93.1 32 .A...............A........... ATCCGCTGGTGCACGAAGTAGGGCGCCTCGAA 551039 29 89.7 33 ........T..C..T.............. TGCGCCGGCACCCGGCGGGTAACGACGAGTCCG 551101 29 96.6 55 .......................A..... TCCTGGGCGGTGGTCTGCTCCCCGCACCCTCAGTGGCAGGCGCTACCGTTGCCGT 551185 29 96.6 32 ...G......................... CACACCCTGCGCAGCCTGGCGGAGGCCACCTT 551246 28 86.2 0 .......A.......A......-.A.... | ========== ====== ====== ====== ============================= ======================================================= ================== 38 29 94.6 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : GCTGAGCTTGCCGGTGAGGAGCCGCTCGAACGTGAACTCCGCCTCCCCGTCCGCGCTGGTGGTGTCGACGAGCCACGCGGTCTGGAGCAGGTGCTGGAGCGCCTTGCGTTCGGTGTCTGCGGTGAACCTGCTGGCCTCCCCGTCGTAAAGGCCGTCCTGAGGCCGCGGCGCGAGGTTGAAGTCCCCGCAGATCAGCAGGGCCGCCCGCCCTCGGCGGCGGCAAGCGTCGCGAGCTCGCCAAGCTGGGTTGTGCGCGCCGCGCTGGTATAGGCGTCGAGGTGGACCTGAAGGACGGTGAGCCAGCCCAGTTCCACTCGCTGCGCCCAGCCGGTCGGTGCGGAGGCGGATGTCCTCGCGGACCCAGGTGGCGAGGTAGCCGTTCCCGCCCGCGAGGACGTACCCGGGCAGGAGCGGCGGGCGCCGGTCGACGGGCTTGTACGGCTCCTGCGCAACCCGCGAGGTGGTCCGGACGCGTCAGCGTAGGGGATGATGCTGCCCTC # Right flank : CCACCGGCCACCTGCCCATGGTCGAAAGCCCCGGGGAATGGCAGCGGCTCATCACCGACTTCCTCGCCGAGCACGACGCCTGAGAGACGCACGACCCCGAGCCCGAGGGAGGGGTCCCGGGCTCGGGGTGTGGGGCCTGCCGGCGTCCGCCTACTTGAAGGTGACGTCCGAGCAGGAGTAGAAGGCCTCCTCGCTCTGGAAGGAGCCGTCGGGCCGCTTCAGCCCGTGCCAGATCGTGTAGATCAGGTGCTTGCCCTTCTTCTCGGGGAGCACCGTCTTGAACGTGAACGCCTTCGCGCCGAGGAAGCCCGAGGGGGCGGCCGTGGCCGCGGTGTTGTCAGCGCTGAGGAAGGGGGTGTCCTCCAGGTCGGACCACTTCAGCGGCTTCTTCGGGTCGTAGCCGTCCTTGGTGACGTACATCTCCATGCGGTACGGGTTGTGCAGCGCGCTGATGTCGTAGCGGAGGTCGTACTCGGCCCCGCCGGGTAGCGTCGTCGAGG # Questionable array : NO Score: 5.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.27, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [19-26] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 5803677-5803831 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGINR010000001.1 Streptomyces cinnamonensis strain DSM 40803 Ga0451095_01, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================== ================== 5803677 28 96.4 36 ........................A... CAAAGGGCTCGCTGACGCCGTCCGTCAGGAGCGCGC 5803741 28 100.0 35 ............................ GCAGAGGCTCGCAGGCGCGTGATGGAGACGTGTGT 5803804 28 96.4 0 ................T........... | ========== ====== ====== ====== ============================ ==================================== ================== 3 28 97.6 36 AGCGATCGATGGCGGCCTATGTCCGGCC # Left flank : TGCCCTGCGCGGGCGAAGCCCGGGCGCCGCAGATCGCTACGCGCTCCTGACGGATGGCGTCTGCGAGCCCCTTGGGCTGGACATAAGCCGCCACCAATCGCTACGCGCTCCTGACGGACGGCGTCTGCGAGTCTCTGTGGCTGGTCATAGGCCGCGCTCGATCGCTACGCGCTCCTCGACGACTGCGTCCGGCCCTCGTCTGGGGCTGAGGGGGGCGGAATCGAGGGGCGGGAGGGCGATCCATCGGCTCAGCCGATGCCAACCCCTATCAAGACCACGGTGAGAGCCCACCCGCCGGTACAGGCAGGGGTAATTGGGGCATATTGGAGGCTCTTTGGGGCGCGCGCTCGTCCAGGCATGGATTGGCATCGCTCCAGCCGTCATCTGACGCTTTTCCTCCCCACGCAGGGGCCAGACGCCGTCCGTGAGGAGTGCCGGAAGGTTTCTGCGGCCTATGGTCAGCTCCAGACGGACCGCAGACGCGTGATCGAGAAGCGCGT # Right flank : CACAGGGGCTCGCAGACGCCGAGCCTTCAGGAGCGCGTAGCGATTGGACGCGCCCCGGGCTTCGCCCGCGCAGGGCCGACGCCCCGTCTCTGAAAGCTGAGACCGGCCCGTTCCTTTGGGGGCTTCCCGGCAGTCTTTCGTATTTCCGTGGCGGGACGGGCGGTCAAGGGTGGCCGAAGGCCATCACGAAGTGACGCGACCGCAGGGAGCGCCCTTGACGGGCCGGCCCGACGCGGAGAGACGATGGGACTGACGGGAAACCCCCAAACCCTCCCTGATCCCGACCCGTATAGGTCCCGCCCGGCGTGGCCCCCACGTCCGTCCGGCTCCGGCCGCGCGGCTCCGCCCCCGACACCACCGGCGCGCCCTTCCGGTCCCGCCCGAGTGGGACCCCCGACCCGACCGTCCTCAGTCGTTCAGCAGGCGGGCCTTCGCCGTCGTGAACTCCTGGGGGGTCAGCAGGCCCTCGCGGGCCAGGTCGGCCAGTTGGCGCAGCTCCG # Questionable array : NO Score: 2.55 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGCGATCGATGGCGGCCTATGTCCGGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [36.7-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA //