Array 1 273765-273308 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKKQ01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain A22HEB21 NODE_1_length_714068_cov_20.437672, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 273764 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 273703 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 273642 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 273581 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 273520 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 273459 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 273398 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 273337 29 96.6 0 A............................ | A [273310] ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 291511-289897 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKKQ01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain A22HEB21 NODE_1_length_714068_cov_20.437672, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 291510 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 291449 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 291388 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 291327 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 291266 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 291205 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 291144 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 291083 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 291022 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 290961 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 290900 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 290839 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 290778 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 290717 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 290656 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 290595 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 290534 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 290473 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 290412 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 290351 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 290290 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 290229 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 290168 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 290107 29 96.6 32 ........A.................... CAGGTTATGCGCAAAAATTAATTCATATTATA 290046 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 289985 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 289924 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //